| Year |
Citation |
Score |
| 2023 |
Todd ET, Fromentier A, Sutcliffe R, Running Horse Collin Y, Perdereau A, Aury JM, Èche C, Bouchez O, Donnadieu C, Wincker P, Kalbfleisch T, Petersen JL, Orlando L. Imputed genomes of historical horses provide insights into modern breeding. Iscience. 26: 107104. PMID 37416458 DOI: 10.1016/j.isci.2023.107104 |
0.525 |
|
| 2023 |
Noel B, Denoeud F, Rouan A, Buitrago-López C, Capasso L, Poulain J, Boissin E, Pousse M, Da Silva C, Couloux A, Armstrong E, Carradec Q, Cruaud C, Labadie K, Lê-Hoang J, ... ... Wincker P, et al. Pervasive tandem duplications and convergent evolution shape coral genomes. Genome Biology. 24: 123. PMID 37264421 DOI: 10.1186/s13059-023-02960-7 |
0.5 |
|
| 2023 |
Veglia AJ, Bistolas KSI, Voolstra CR, Hume BCC, Ruscheweyh HJ, Planes S, Allemand D, Boissin E, Wincker P, Poulain J, Moulin C, Bourdin G, Iwankow G, Romac S, Agostini S, et al. Endogenous viral elements reveal associations between a non-retroviral RNA virus and symbiotic dinoflagellate genomes. Communications Biology. 6: 566. PMID 37264063 DOI: 10.1038/s42003-023-04917-9 |
0.469 |
|
| 2023 |
Belser C, Poulain J, Labadie K, Gavory F, Alberti A, Guy J, Carradec Q, Cruaud C, Da Silva C, Engelen S, Mielle P, Perdereau A, Samson G, Gas S, Voolstra CR, ... ... Wincker P, et al. Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition. Scientific Data. 10: 326. PMID 37264047 DOI: 10.1038/s41597-023-02204-0 |
0.322 |
|
| 2023 |
Marlétaz F, Couloux A, Poulain J, Labadie K, Da Silva C, Mangenot S, Noel B, Poustka AJ, Dru P, Pegueroles C, Borra M, Lowe EK, Lhomond G, Besnardeau L, Le Gras S, ... ... Wincker P, et al. Analysis of the sea urchin genome highlights contrasting trends of genomic and regulatory evolution in deuterostomes. Cell Genomics. 3: 100295. PMID 37082140 DOI: 10.1016/j.xgen.2023.100295 |
0.448 |
|
| 2023 |
Gaïa M, Meng L, Pelletier E, Forterre P, Vanni C, Fernandez-Guerra A, Jaillon O, Wincker P, Ogata H, Krupovic M, Delmont TO. Mirusviruses link herpesviruses to giant viruses. Nature. 616: 783-789. PMID 37076623 DOI: 10.1038/s41586-023-05962-4 |
0.417 |
|
| 2023 |
Doré H, Guyet U, Leconte J, Farrant GK, Alric B, Ratin M, Ostrowski M, Ferrieux M, Brillet-Guéguen L, Hoebeke M, Siltanen J, Le Corguillé G, Corre E, Wincker P, Scanlan DJ, et al. Differential global distribution of marine picocyanobacteria gene clusters reveals distinct niche-related adaptive strategies. The Isme Journal. PMID 36841901 DOI: 10.1038/s41396-023-01386-0 |
0.45 |
|
| 2023 |
Wagner S, Seguin-Orlando A, Leplé JC, Leroy T, Lalanne C, Labadie K, Aury JM, Poirier S, Wincker P, Plomion C, Kremer A, Orlando L. Tracking population structure and phenology through time using ancient genomes from waterlogged white oak wood. Molecular Ecology. PMID 36748324 DOI: 10.1111/mec.16859 |
0.46 |
|
| 2022 |
Delmont TO, Gaia M, Hinsinger DD, Frémont P, Vanni C, Fernandez-Guerra A, Eren AM, Kourlaiev A, d'Agata L, Clayssen Q, Villar E, Labadie K, Cruaud C, Poulain J, Da Silva C, ... ... Wincker P, et al. Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean. Cell Genomics. 2: 100123. PMID 36778897 DOI: 10.1016/j.xgen.2022.100123 |
0.508 |
|
| 2022 |
Wang Y, Pedersen MW, Alsos IG, De Sanctis B, Racimo F, Prohaska A, Coissac E, Owens HL, Merkel MKF, Fernandez-Guerra A, Rouillard A, Lammers Y, Alberti A, Denoeud F, Money D, ... ... Wincker P, et al. Author Correction: Late Quaternary dynamics of Arctic biota from ancient environmental genomics. Nature. PMID 36163291 DOI: 10.1038/s41586-022-05359-9 |
0.396 |
|
| 2022 |
Guérin N, Ciccarella M, Flamant E, Frémont P, Mangenot S, Istace B, Noel B, Belser C, Bertrand L, Labadie K, Cruaud C, Romac S, Bachy C, Gachenot M, Pelletier E, ... ... Wincker P, et al. Genomic adaptation of the picoeukaryote Pelagomonas calceolata to iron-poor oceans revealed by a chromosome-scale genome sequence. Communications Biology. 5: 983. PMID 36114260 DOI: 10.1038/s42003-022-03939-z |
0.435 |
|
| 2022 |
Todd ET, Tonasso-Calvière L, Chauvey L, Schiavinato S, Fages A, Seguin-Orlando A, Clavel P, Khan N, Pérez Pardal L, Patterson Rosa L, Librado P, Ringbauer H, Verdugo M, Southon J, Aury JM, ... ... Wincker P, et al. The genomic history and global expansion of domestic donkeys. Science (New York, N.Y.). 377: 1172-1180. PMID 36074859 DOI: 10.1126/science.abo3503 |
0.386 |
|
| 2022 |
Richter DJ, Watteaux R, Vannier T, Leconte J, Frémont P, Reygondeau G, Maillet N, Henry N, Benoit G, Da Silva O, Delmont TO, Fernàndez-Guerra A, Suweis S, Narci R, Berney C, ... ... Wincker P, et al. Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems. Elife. 11. PMID 35920817 DOI: 10.7554/eLife.78129 |
0.348 |
|
| 2022 |
Paoli L, Ruscheweyh HJ, Forneris CC, Hubrich F, Kautsar S, Bhushan A, Lotti A, Clayssen Q, Salazar G, Milanese A, Carlström CI, Papadopoulou C, Gehrig D, Karasikov M, Mustafa H, ... ... Wincker P, et al. Biosynthetic potential of the global ocean microbiome. Nature. PMID 35732736 DOI: 10.1038/s41586-022-04862-3 |
0.459 |
|
| 2022 |
Aury JM, Engelen S, Istace B, Monat C, Lasserre-Zuber P, Belser C, Cruaud C, Rimbert H, Leroy P, Arribat S, Dufau I, Bellec A, Grimbichler D, Papon N, Paux E, ... ... Wincker P, et al. Long-read and chromosome-scale assembly of the hexaploid wheat genome achieves high resolution for research and breeding. Gigascience. 11. PMID 35482491 DOI: 10.1093/gigascience/giac034 |
0.461 |
|
| 2022 |
Canaguier A, Guilbaud R, Denis E, Magdelenat G, Belser C, Istace B, Cruaud C, Wincker P, Le Paslier MC, Faivre-Rampant P, Barbe V. Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variation detection. Bmc Genomics. 23: 317. PMID 35448948 DOI: 10.1186/s12864-022-08499-4 |
0.417 |
|
| 2022 |
Tran Lu Y A, Ruault S, Daguin-Thiébaut C, Castel J, Bierne N, Broquet T, Wincker P, Perdereau A, Arnaud-Haond S, Gagnaire PA, Jollivet D, Hourdez S, Bonhomme F. Subtle limits to connectivity revealed by outlier loci within two divergent metapopulations of the deep-sea hydrothermal gastropod Ifremeria nautilei. Molecular Ecology. PMID 35305041 DOI: 10.1111/mec.16430 |
0.351 |
|
| 2022 |
Wang Y, Pedersen MW, Alsos IG, De Sanctis B, Racimo F, Prohaska A, Coissac E, Owens HL, Merkel MKF, Fernandez-Guerra A, Rouillard A, Lammers Y, Alberti A, Denoeud F, Money D, ... ... Wincker P, et al. Author Correction: Late Quaternary dynamics of Arctic biota from ancient environmental genomics. Nature. PMID 35296866 DOI: 10.1038/s41586-022-04628-x |
0.396 |
|
| 2022 |
Grébert T, Garczarek L, Daubin V, Humily F, Marie D, Ratin M, Devailly A, Farrant GK, Mary I, Mella-Flores D, Tanguy G, Labadie K, Wincker P, Kehoe DM, Partensky F. Diversity and evolution of pigment types in marine Synechococcus cyanobacteria. Genome Biology and Evolution. PMID 35276007 DOI: 10.1093/gbe/evac035 |
0.457 |
|
| 2022 |
Pierella Karlusich JJ, Pelletier E, Zinger L, Lombard F, Zingone A, Colin S, Gasol JM, Dorrell RG, Henry N, Scalco E, Acinas SG, Wincker P, de Vargas C, Bowler C. A robust approach to estimate relative phytoplankton cell abundances from metagenomes. Molecular Ecology Resources. PMID 35108459 DOI: 10.1111/1755-0998.13592 |
0.433 |
|
| 2021 |
Royo-Llonch M, Sánchez P, Ruiz-González C, Salazar G, Pedrós-Alió C, Sebastián M, Labadie K, Paoli L, M Ibarbalz F, Zinger L, Churcheward B, Chaffron S, Eveillard D, Karsenti E, ... ... Wincker P, et al. Compendium of 530 metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean. Nature Microbiology. PMID 34782724 DOI: 10.1038/s41564-021-00979-9 |
0.493 |
|
| 2021 |
Delmont TO, Pierella Karlusich JJ, Veseli I, Fuessel J, Eren AM, Foster RA, Bowler C, Wincker P, Pelletier E. Heterotrophic bacterial diazotrophs are more abundant than their cyanobacterial counterparts in metagenomes covering most of the sunlit ocean. The Isme Journal. PMID 34697433 DOI: 10.1038/s41396-021-01135-1 |
0.459 |
|
| 2021 |
Wang Y, Pedersen MW, Alsos IG, De Sanctis B, Racimo F, Prohaska A, Coissac E, Owens HL, Merkel MKF, Fernandez-Guerra A, Rouillard A, Lammers Y, Alberti A, Denoeud F, Money D, ... ... Wincker P, et al. Late Quaternary dynamics of Arctic biota from ancient environmental genomics. Nature. PMID 34671161 DOI: 10.1038/s41586-021-04016-x |
0.344 |
|
| 2021 |
Belser C, Baurens FC, Noel B, Martin G, Cruaud C, Istace B, Yahiaoui N, Labadie K, Hřibová E, Doležel J, Lemainque A, Wincker P, D'Hont A, Aury JM. Telomere-to-telomere gapless chromosomes of banana using nanopore sequencing. Communications Biology. 4: 1047. PMID 34493830 DOI: 10.1038/s42003-021-02559-3 |
0.321 |
|
| 2021 |
Istace B, Belser C, Falentin C, Labadie K, Boideau F, Deniot G, Maillet L, Cruaud C, Bertrand L, Chèvre AM, Wincker P, Rousseau-Gueutin M, Aury JM. Sequencing and Chromosome-Scale Assembly of Plant Genomes, as a Use Case. Biology. 10. PMID 34439964 DOI: 10.3390/biology10080732 |
0.421 |
|
| 2021 |
Groppi A, Liu S, Cornille A, Decroocq S, Bui QT, Tricon D, Cruaud C, Arribat S, Belser C, Marande W, Salse J, Huneau C, Rodde N, Rhalloussi W, Cauet S, ... ... Wincker P, et al. Population genomics of apricots unravels domestication history and adaptive events. Nature Communications. 12: 3956. PMID 34172741 DOI: 10.1038/s41467-021-24283-6 |
0.411 |
|
| 2021 |
Gay EJ, Soyer JL, Lapalu N, Linglin J, Fudal I, Da Silva C, Wincker P, Aury JM, Cruaud C, Levrel A, Lemoine J, Delourme R, Rouxel T, Balesdent MH. Large-scale transcriptomics to dissect 2 years of the life of a fungal phytopathogen interacting with its host plant. Bmc Biology. 19: 55. PMID 33757516 DOI: 10.1186/s12915-021-00989-3 |
0.334 |
|
| 2021 |
Labarre A, López-Escardó D, Latorre F, Leonard G, Bucchini F, Obiol A, Cruaud C, Sieracki ME, Jaillon O, Wincker P, Vandepoele K, Logares R, Massana R. Comparative genomics reveals new functional insights in uncultured MAST species. The Isme Journal. PMID 33452482 DOI: 10.1038/s41396-020-00885-8 |
0.572 |
|
| 2021 |
Farhat S, Le P, Kayal E, Noel B, Bigeard E, Corre E, Maumus F, Florent I, Alberti A, Aury JM, Barbeyron T, Cai R, Da Silva C, Istace B, Labadie K, ... ... Wincker P, et al. Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp. Bmc Biology. 19: 1. PMID 33407428 DOI: 10.1186/s12915-020-00927-9 |
0.438 |
|
| 2020 |
Rousseau-Gueutin M, Belser C, Da Silva C, Richard G, Istace B, Cruaud C, Falentin C, Boideau F, Boutte J, Delourme R, Deniot G, Engelen S, de Carvalho JF, Lemainque A, Maillet L, ... ... Wincker P, et al. Long-read assembly of the Brassica napus reference genome Darmor-bzh. Gigascience. 9. PMID 33319912 DOI: 10.1093/gigascience/giaa137 |
0.441 |
|
| 2020 |
Djemiel C, Dequiedt S, Karimi B, Cottin A, Girier T, El Djoudi Y, Wincker P, Lelièvre M, Mondy S, Chemidlin Prévost-Bouré N, Maron PA, Ranjard L, Terrat S. BIOCOM-PIPE: a new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S and 23S rRNA gene amplicons. Bmc Bioinformatics. 21: 492. PMID 33129268 DOI: 10.1186/s12859-020-03829-3 |
0.592 |
|
| 2020 |
Garczarek L, Guyet U, Doré H, Farrant GK, Hoebeke M, Brillet-Guéguen L, Bisch A, Ferrieux M, Siltanen J, Corre E, Le Corguillé G, Ratin M, Pitt FD, Ostrowski M, Conan M, ... ... Wincker P, et al. Cyanorak v2.1: a scalable information system dedicated to the visualization and expert curation of marine and brackish picocyanobacteria genomes. Nucleic Acids Research. PMID 33125079 DOI: 10.1093/nar/gkaa958 |
0.532 |
|
| 2020 |
Doré H, Farrant GK, Guyet U, Haguait J, Humily F, Ratin M, Pitt FD, Ostrowski M, Six C, Brillet-Guéguen L, Hoebeke M, Bisch A, Le Corguillé G, Corre E, Labadie K, ... ... Wincker P, et al. Evolutionary Mechanisms of Long-Term Genome Diversification Associated With Niche Partitioning in Marine Picocyanobacteria. Frontiers in Microbiology. 11: 567431. PMID 33042072 DOI: 10.3389/fmicb.2020.567431 |
0.466 |
|
| 2020 |
Carradec Q, Poulain J, Boissin E, Hume BCC, Voolstra CR, Ziegler M, Engelen S, Cruaud C, Planes S, Wincker P. A framework for in situ molecular characterization of coral holobionts using nanopore sequencing. Scientific Reports. 10: 15893. PMID 32985530 DOI: 10.1038/s41598-020-72589-0 |
0.35 |
|
| 2020 |
Sato S, Nanjappa D, Dorrell RG, Vieira FRJ, Kazamia E, Tirichine L, Veluchamy A, Heilig R, Aury JM, Jaillon O, Wincker P, Fussy Z, Obornik M, Muñoz-Gómez SA, Mann DG, et al. Genome-enabled phylogenetic and functional reconstruction of an araphid pennate diatom Plagiostriata sp. CCMP470, previously assigned as a radial centric diatom, and its bacterial commensal. Scientific Reports. 10: 9449. PMID 32523048 DOI: 10.1038/S41598-020-65941-X |
0.551 |
|
| 2020 |
Vorobev A, Dupouy M, Carradec Q, Delmont T, Annamale A, Wincker P, Pelletier E. Transcriptome reconstruction and functional analysis of eukaryotic marine plankton communities via high-throughput metagenomics and metatranscriptomics. Genome Research. PMID 32205368 DOI: 10.1101/gr.253070.119 |
0.492 |
|
| 2020 |
Leconte J, Benites LF, Vannier T, Wincker P, Piganeau G, Jaillon O. Genome Resolved Biogeography of Mamiellales. Genes. 11. PMID 31936086 DOI: 10.3390/genes11010066 |
0.399 |
|
| 2019 |
Salazar G, Paoli L, Alberti A, Huerta-Cepas J, Ruscheweyh HJ, Cuenca M, Field CM, Coelho LP, Cruaud C, Engelen S, Gregory AC, Labadie K, Marec C, Pelletier E, Royo-Llonch M, ... ... Wincker P, et al. Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome. Cell. 179: 1068-1083.e21. PMID 31730850 DOI: 10.1016/J.Cell.2019.10.014 |
0.317 |
|
| 2019 |
Planes S, Allemand D, Agostini S, Banaigs B, Boissin E, Boss E, Bourdin G, Bowler C, Douville E, Flores JM, Forcioli D, Furla P, Galand PE, Ghiglione JF, Gilson E, ... ... Wincker P, et al. The Tara Pacific expedition-A pan-ecosystemic approach of the "-omics" complexity of coral reef holobionts across the Pacific Ocean. Plos Biology. 17: e3000483. PMID 31545807 DOI: 10.1371/Journal.Pbio.3000483 |
0.315 |
|
| 2019 |
Kreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, ... ... Wincker P, et al. A reference genome for pea provides insight into legume genome evolution. Nature Genetics. 51: 1411-1422. PMID 31477930 DOI: 10.1038/S41588-019-0480-1 |
0.544 |
|
| 2019 |
Gregory AC, Zayed AA, Conceição-Neto N, Temperton B, Bolduc B, Alberti A, Ardyna M, Arkhipova K, Carmichael M, Cruaud C, Dimier C, Domínguez-Huerta G, Ferland J, Kandels S, Liu Y, ... ... Wincker P, et al. Marine DNA Viral Macro- and Microdiversity from Pole to Pole. Cell. PMID 31031001 DOI: 10.1016/J.Cell.2019.03.040 |
0.307 |
|
| 2019 |
Sieracki ME, Poulton NJ, Jaillon O, Wincker P, de Vargas C, Rubinat-Ripoll L, Stepanauskas R, Logares R, Massana R. Single cell genomics yields a wide diversity of small planktonic protists across major ocean ecosystems. Scientific Reports. 9: 6025. PMID 30988337 DOI: 10.1038/s41598-019-42487-1 |
0.542 |
|
| 2019 |
Leclère L, Horin C, Chevalier S, Lapébie P, Dru P, Peron S, Jager M, Condamine T, Pottin K, Romano S, Steger J, Sinigaglia C, Barreau C, Quiroga Artigas G, Ruggiero A, ... ... Wincker P, et al. The genome of the jellyfish Clytia hemisphaerica and the evolution of the cnidarian life-cycle. Nature Ecology & Evolution. PMID 30858591 DOI: 10.1038/S41559-019-0833-2 |
0.376 |
|
| 2019 |
Ferreira de Carvalho J, Lucas J, Deniot G, Falentin C, Filangi O, Gilet M, Legeai F, Lode M, Morice J, Trotoux G, Aury JM, Barbe V, Keller J, Snowdon R, He Z, ... ... Wincker P, et al. Cytonuclear interactions remain stable during allopolyploid evolution despite repeated whole-genome duplications in Brassica. The Plant Journal : For Cell and Molecular Biology. PMID 30604905 DOI: 10.1111/tpj.14228 |
0.449 |
|
| 2019 |
Gorsky G, Bourdin G, Lombard F, Pedrotti ML, Audrain S, Bin N, Boss E, Bowler C, Cassar N, Caudan L, Chabot G, Cohen NR, Cron D, De Vargas C, Dolan JR, ... ... Wincker P, et al. Expanding Tara Oceans Protocols for Underway, Ecosystemic Sampling of the Ocean-Atmosphere Interface During Tara Pacific Expedition (2016–2018) Frontiers in Marine Science. 6. DOI: 10.3389/Fmars.2019.00750 |
0.303 |
|
| 2018 |
Arif M, Gauthier J, Sugier K, Iudicone D, Jaillon O, Wincker P, Peterlongo P, Madoui MA. Discovering Millions of Plankton Genomic Markers from the Atlantic Ocean and the Mediterranean Sea. Molecular Ecology Resources. PMID 30575285 DOI: 10.1111/1755-0998.12985 |
0.5 |
|
| 2018 |
Marlétaz F, Firbas PN, Maeso I, Tena JJ, Bogdanovic O, Perry M, Wyatt CDR, de la Calle-Mustienes E, Bertrand S, Burguera D, Acemel RD, van Heeringen SJ, Naranjo S, Herrera-Ubeda C, Skvortsova K, ... ... Wincker P, et al. Amphioxus functional genomics and the origins of vertebrate gene regulation. Nature. PMID 30464347 DOI: 10.1038/S41586-018-0734-6 |
0.499 |
|
| 2018 |
Murat C, Payen T, Noel B, Kuo A, Morin E, Chen J, Kohler A, Krizsán K, Balestrini R, Da Silva C, Montanini B, Hainaut M, Levati E, Barry KW, Belfiori B, ... ... Wincker P, et al. Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle. Nature Ecology & Evolution. PMID 30420746 DOI: 10.1038/S41559-018-0710-4 |
0.433 |
|
| 2018 |
Decelle J, Carradec Q, Pochon X, Henry N, Romac S, Mahé F, Dunthorn M, Kourlaiev A, Voolstra CR, Wincker P, de Vargas C. Worldwide Occurrence and Activity of the Reef-Building Coral Symbiont Symbiodinium in the Open Ocean. Current Biology : Cb. PMID 30416058 DOI: 10.1016/J.Cub.2018.09.024 |
0.303 |
|
| 2018 |
Dutreux F, Da Silva C, d'Agata L, Couloux A, Gay EJ, Istace B, Lapalu N, Lemainque A, Linglin J, Noel B, Wincker P, Cruaud C, Rouxel T, Balesdent MH, Aury JM. De novo assembly and annotation of three Leptosphaeria genomes using Oxford Nanopore MinION sequencing. Scientific Data. 5: 180235. PMID 30398473 DOI: 10.1038/sdata.2018.235 |
0.417 |
|
| 2018 |
Belser C, Istace B, Denis E, Dubarry M, Baurens FC, Falentin C, Genete M, Berrabah W, Chèvre AM, Delourme R, Deniot G, Denoeud F, Duffé P, Engelen S, Lemainque A, ... ... Wincker P, et al. Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps. Nature Plants. 4: 879-887. PMID 30390080 DOI: 10.1038/S41477-018-0289-4 |
0.426 |
|
| 2018 |
Silar P, Dauget JM, Gautier V, Grognet P, Chablat M, Hermann-Le Denmat S, Couloux A, Wincker P, Debuchy R. A gene graveyard in the genome of the fungus Podospora comata. Molecular Genetics and Genomics : Mgg. PMID 30288581 DOI: 10.1007/s00438-018-1497-3 |
0.436 |
|
| 2018 |
Appels R, Eversole K, Feuillet C, Keller B, Rogers J, Stein N, Pozniak CJ, Stein N, Choulet F, Distelfeld A, Eversole K, Poland J, ... ... Wincker P, et al. Shifting the limits in wheat research and breeding using a fully annotated reference genome. Science (New York, N.Y.). 361. PMID 30115783 DOI: 10.1126/Science.Aar7191 |
0.528 |
|
| 2018 |
Cubry P, Tranchant-Dubreuil C, Thuillet AC, Monat C, Ndjiondjop MN, Labadie K, Cruaud C, Engelen S, Scarcelli N, Rhoné B, Burgarella C, Dupuy C, Larmande P, Wincker P, François O, et al. The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes. Current Biology : Cb. PMID 29983312 DOI: 10.1016/j.cub.2018.05.066 |
0.402 |
|
| 2018 |
Plomion C, Aury JM, Amselem J, Leroy T, Murat F, Duplessis S, Faye S, Francillonne N, Labadie K, Le Provost G, Lesur I, Bartholomé J, Faivre-Rampant P, Kohler A, Leplé JC, ... ... Wincker P, et al. Oak genome reveals facets of long lifespan. Nature Plants. PMID 29915331 DOI: 10.1038/S41477-018-0172-3 |
0.474 |
|
| 2018 |
Meng A, Marchet C, Corre E, Peterlongo P, Alberti A, Da Silva C, Wincker P, Pelletier E, Probert I, Decelle J, Le Crom S, Not F, Bittner L. A de novo approach to disentangle partner identity and function in holobiont systems. Microbiome. 6: 105. PMID 29885666 DOI: 10.1186/S40168-018-0481-9 |
0.311 |
|
| 2018 |
Raymond O, Gouzy J, Just J, Badouin H, Verdenaud M, Lemainque A, Vergne P, Moja S, Choisne N, Pont C, Carrère S, Caissard JC, Couloux A, Cottret L, Aury JM, ... ... Wincker P, et al. The Rosa genome provides new insights into the domestication of modern roses. Nature Genetics. PMID 29713014 DOI: 10.1038/S41588-018-0110-3 |
0.512 |
|
| 2018 |
Gaulin E, Pel MJC, Camborde L, San-Clemente H, Courbier S, Dupouy MA, Lengellé J, Veyssiere M, Le Ru A, Grandjean F, Cordaux R, Moumen B, Gilbert C, Cano LM, Aury JM, ... ... Wincker P, et al. Genomics analysis of Aphanomyces spp. identifies a new class of oomycete effector associated with host adaptation. Bmc Biology. 16: 43. PMID 29669603 DOI: 10.1186/S12915-018-0508-5 |
0.302 |
|
| 2018 |
Peter J, De Chiara M, Friedrich A, Yue JX, Pflieger D, Bergström A, Sigwalt A, Barre B, Freel K, Llored A, Cruaud C, Labadie K, Aury JM, Istace B, Lebrigand K, ... ... Wincker P, et al. Genome evolution across 1,011 Saccharomyces cerevisiae isolates. Nature. 556: 339-344. PMID 29643504 DOI: 10.1038/S41586-018-0030-5 |
0.505 |
|
| 2018 |
Meng A, Corre E, Probert I, Gutierrez-Rodriguez A, Siano R, Annamale A, Alberti A, Da Silva C, Wincker P, Le Crom S, Not F, Bittner L. Analysis of the genomic basis of functional diversity in dinoflagellates using a transcriptome-based sequence similarity network. Molecular Ecology. PMID 29624751 DOI: 10.1111/Mec.14579 |
0.464 |
|
| 2018 |
Alberto FJ, Boyer F, Orozco-terWengel P, Streeter I, Servin B, de Villemereuil P, Benjelloun B, Librado P, Biscarini F, Colli L, Barbato M, Zamani W, Alberti A, Engelen S, Stella A, ... ... Wincker P, et al. Convergent genomic signatures of domestication in sheep and goats. Nature Communications. 9: 813. PMID 29511174 DOI: 10.1038/S41467-018-03206-Y |
0.481 |
|
| 2018 |
Carradec Q, Pelletier E, Da Silva C, Alberti A, Seeleuthner Y, Blanc-Mathieu R, Lima-Mendez G, Rocha F, Tirichine L, Labadie K, Kirilovsky A, Bertrand A, Engelen S, Madoui MA, Méheust R, ... ... Wincker P, et al. A global ocean atlas of eukaryotic genes. Nature Communications. 9: 373. PMID 29371626 DOI: 10.1038/S41467-017-02342-1 |
0.495 |
|
| 2018 |
Seeleuthner Y, Mondy S, Lombard V, Carradec Q, Pelletier E, Wessner M, Leconte J, Mangot JF, Poulain J, Labadie K, Logares R, Sunagawa S, de Berardinis V, Salanoubat M, Dimier C, ... ... Wincker P, et al. Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans. Nature Communications. 9: 310. PMID 29358710 DOI: 10.1038/S41467-017-02235-3 |
0.682 |
|
| 2017 |
Fournier T, Gounot JS, Freel K, Cruaud C, Lemainque A, Aury JM, Wincker P, Schacherer J, Friedrich A. High-Quality de Novo Genome Assembly of the Dekkera bruxellensis Yeast Using Nanopore MinION Sequencing. G3 (Bethesda, Md.). 7: 3243-3250. PMID 28983066 DOI: 10.1534/G3.117.300128 |
0.51 |
|
| 2017 |
Gouin A, Bretaudeau A, Nam K, Gimenez S, Aury JM, Duvic B, Hilliou F, Durand N, Montagné N, Darboux I, Kuwar S, Chertemps T, Siaussat D, Bretschneider A, Moné Y, ... ... Wincker P, et al. Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges. Scientific Reports. 7: 11816. PMID 28947760 DOI: 10.1038/S41598-017-10461-4 |
0.381 |
|
| 2017 |
Sun S, Yadav V, Billmyre RB, Cuomo CA, Nowrousian M, Wang L, Souciet JL, Boekhout T, Porcel B, Wincker P, Granek JA, Sanyal K, Heitman J. Fungal genome and mating system transitions facilitated by chromosomal translocations involving intercentromeric recombination. Plos Biology. 15: e2002527. PMID 28800596 DOI: 10.1371/Journal.Pbio.2002527 |
0.351 |
|
| 2017 |
Fournier T, Gounot JS, Freel K, Cruaud C, Lemainque A, Aury JM, Wincker P, Schacherer J, Friedrich A. High-Quality de Novo Genome Assembly of the Dekkera bruxellensis Yeast Isolate Using Nanopore MinION Sequencing. G3 (Bethesda, Md.). PMID 28794062 DOI: 10.1534/g3.117.300128 |
0.508 |
|
| 2017 |
Alberti A, Poulain J, Engelen S, Labadie K, Romac S, Ferrera I, Albini G, Aury JM, Belser C, Bertrand A, Cruaud C, Da Silva C, Dossat C, Gavory F, Gas S, ... ... Wincker P, et al. Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition. Scientific Data. 4: 170093. PMID 28763055 DOI: 10.1038/Sdata.2017.93 |
0.548 |
|
| 2017 |
Madoui MA, Poulain J, Sugier K, Wessner M, Noel B, Berline L, Labadie K, Cornils A, Blanco-Bercial L, Stemmann L, Jamet JL, Wincker P. New insights into global biogeography, population structure and natural selection from the genome of the epipelagic copepod Oithona. Molecular Ecology. PMID 28636804 DOI: 10.1111/mec.14214 |
0.492 |
|
| 2017 |
Blanc-Mathieu R, Perfus-Barbeoch L, Aury JM, Da Rocha M, Gouzy J, Sallet E, Martin-Jimenez C, Bailly-Bechet M, Castagnone-Sereno P, Flot JF, Kozlowski DK, Cazareth J, Couloux A, Da Silva C, Guy J, ... ... Wincker P, et al. Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes. Plos Genetics. 13: e1006777. PMID 28594822 DOI: 10.1371/journal.pgen.1006777 |
0.496 |
|
| 2017 |
Istace B, Friedrich A, d'Agata L, Faye S, Payen E, Beluche O, Caradec C, Davidas S, Cruaud C, Liti G, Lemainque A, Engelen S, Wincker P, Schacherer J, Aury JM. de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer. Gigascience. 6: 1-13. PMID 28369459 DOI: 10.1093/Gigascience/Giw018 |
0.484 |
|
| 2017 |
Mangot JF, Logares R, Sánchez P, Latorre F, Seeleuthner Y, Mondy S, Sieracki ME, Jaillon O, Wincker P, Vargas C, Massana R. Accessing the genomic information of unculturable oceanic picoeukaryotes by combining multiple single cells. Scientific Reports. 7: 41498. PMID 28128359 DOI: 10.1038/srep41498 |
0.674 |
|
| 2016 |
Vannier T, Leconte J, Seeleuthner Y, Mondy S, Pelletier E, Aury JM, de Vargas C, Sieracki M, Iudicone D, Vaulot D, Wincker P, Jaillon O. Survey of the green picoalga Bathycoccus genomes in the global ocean. Scientific Reports. 6: 37900. PMID 27901108 DOI: 10.1038/Srep37900 |
0.691 |
|
| 2016 |
Arrigoni R, Vacherie B, Benzoni F, Stefani F, Karsenti E, Jaillon O, Not F, Nunes F, Payri C, Wincker P, Barbe V. A new sequence dataset of SSU rRNA gene for Scleractinia and its phylogenetic and ecological applications. Molecular Ecology Resources. PMID 27889948 DOI: 10.1111/1755-0998.12640 |
0.333 |
|
| 2016 |
Boutte J, Ferreira de CJ, Rousseau-Gueutin M, Poulain J, Da Silva C, Wincker P, Ainouche M, Salmon A. Reference transcriptomes and detection of duplicated copies in hexaploid and allododecaploid Spartina species (Poaceae). Genome Biology and Evolution. PMID 27614235 DOI: 10.1093/gbe/evw209 |
0.403 |
|
| 2016 |
Farrant GK, Doré H, Cornejo-Castillo FM, Partensky F, Ratin M, Ostrowski M, Pitt FD, Wincker P, Scanlan DJ, Iudicone D, Acinas SG, Garczarek L. Delineating ecologically significant taxonomic units from global patterns of marine picocyanobacteria. Proceedings of the National Academy of Sciences of the United States of America. 113: E3365-74. PMID 27302952 DOI: 10.1073/Pnas.1524865113 |
0.315 |
|
| 2016 |
Spirhanzlova P, Dhorne-Pollet S, Fellah JS, Da Silva C, Tlapakova T, Labadie K, Weissenbach J, Poulain J, Jaffredo T, Wincker P, Krylov V, Pollet N. Construction and characterization of a BAC library for functional genomics in Xenopus tropicalis. Developmental Biology. PMID 27256582 DOI: 10.1016/J.Ydbio.2016.05.015 |
0.506 |
|
| 2016 |
Cornejo-Castillo FM, Cabello AM, Salazar G, Sánchez-Baracaldo P, Lima-Mendez G, Hingamp P, Alberti A, Sunagawa S, Bork P, de Vargas C, Raes J, Bowler C, Wincker P, Zehr JP, Gasol JM, et al. Cyanobacterial symbionts diverged in the late Cretaceous towards lineage-specific nitrogen fixation factories in single-celled phytoplankton. Nature Communications. 7: 11071. PMID 27002549 DOI: 10.1038/Ncomms11071 |
0.362 |
|
| 2015 |
Lescot M, Hingamp P, Kojima KK, Villar E, Romac S, Veluchamy A, Boccara M, Jaillon O, Iudicone D, Bowler C, Wincker P, Claverie JM, Ogata H. Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages. The Isme Journal. PMID 26613339 DOI: 10.1038/Ismej.2015.192 |
0.408 |
|
| 2015 |
Alves-Carvalho S, Aubert G, Carrère S, Cruaud C, Brochot AL, Jacquin F, Klein A, Martin C, Boucherot K, Kreplak J, da Silva C, Moreau S, Gamas P, Wincker P, Gouzy J, et al. Full-length de novo assembly of RNA-seq data in pea (Pisum sativum L.) provides a gene expression atlas and gives insights into root nodulation in this species. The Plant Journal : For Cell and Molecular Biology. 84: 1-19. PMID 26296678 DOI: 10.1111/tpj.12967 |
0.401 |
|
| 2015 |
Morel G, Sterck L, Swennen D, Marcet-Houben M, Onesime D, Levasseur A, Jacques N, Mallet S, Couloux A, Labadie K, Amselem J, Beckerich JM, Henrissat B, Van de Peer Y, Wincker P, et al. Corrigendum: Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts. Scientific Reports. 5: 12596. PMID 26225486 DOI: 10.1038/Srep12596 |
0.379 |
|
| 2015 |
Morel G, Sterck L, Swennen D, Marcet-Houben M, Onesime D, Levasseur A, Jacques N, Mallet S, Couloux A, Labadie K, Amselem J, Beckerich JM, Henrissat B, Van de Peer Y, Wincker P, et al. Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts. Scientific Reports. 5: 11571. PMID 26108467 DOI: 10.1038/Srep11571 |
0.38 |
|
| 2015 |
Sunagawa S, Coelho LP, Chaffron S, Kultima JR, Labadie K, Salazar G, Djahanschiri B, Zeller G, Mende DR, Alberti A, Cornejo-Castillo FM, Costea PI, Cruaud C, d'Ovidio F, Engelen S, ... ... Wincker P, et al. Ocean plankton. Structure and function of the global ocean microbiome. Science (New York, N.Y.). 348: 1261359. PMID 25999513 DOI: 10.1126/Science.1261359 |
0.354 |
|
| 2015 |
Plomion C, Aury JM, Amselem J, Alaeitabar T, Barbe V, Belser C, Bergès H, Bodénès C, Boudet N, Boury C, Canaguier A, Couloux A, Da Silva C, Duplessis S, Ehrenmann F, ... ... Wincker P, et al. Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies. Molecular Ecology Resources. PMID 25944057 DOI: 10.1111/1755-0998.12425 |
0.503 |
|
| 2015 |
Madoui MA, Engelen S, Cruaud C, Belser C, Bertrand L, Alberti A, Lemainque A, Wincker P, Aury JM. Genome assembly using Nanopore-guided long and error-free DNA reads. Bmc Genomics. 16: 327. PMID 25927464 DOI: 10.1186/s12864-015-1519-z |
0.364 |
|
| 2015 |
Pingault L, Choulet F, Alberti A, Glover N, Wincker P, Feuillet C, Paux E. Deep transcriptome sequencing provides new insights into the structural and functional organization of the wheat genome. Genome Biology. 16: 29. PMID 25853487 DOI: 10.1186/s13059-015-0601-9 |
0.538 |
|
| 2015 |
Balzano S, Corre E, Decelle J, Sierra R, Wincker P, Da Silva C, Poulain J, Pawlowski J, Not F. Transcriptome analyses to investigate symbiotic relationships between marine protists. Frontiers in Microbiology. 6: 98. PMID 25852650 DOI: 10.3389/Fmicb.2015.00098 |
0.362 |
|
| 2015 |
von Dassow P, John U, Ogata H, Probert I, Bendif el M, Kegel JU, Audic S, Wincker P, Da Silva C, Claverie JM, Doney S, Glover DM, Flores DM, Herrera Y, Lescot M, et al. Life-cycle modification in open oceans accounts for genome variability in a cosmopolitan phytoplankton. The Isme Journal. 9: 1365-77. PMID 25461969 DOI: 10.1038/Ismej.2014.221 |
0.409 |
|
| 2014 |
Daron J, Glover N, Pingault L, Theil S, Jamilloux V, Paux E, Barbe V, Mangenot S, Alberti A, Wincker P, Quesneville H, Feuillet C, Choulet F. Organization and evolution of transposable elements along the bread wheat chromosome 3B. Genome Biology. 15: 546. PMID 25476263 DOI: 10.1186/S13059-014-0546-4 |
0.411 |
|
| 2014 |
Gilly A, Etcheverry M, Madoui MA, Guy J, Quadrana L, Alberti A, Martin A, Heitkam T, Engelen S, Labadie K, Le Pen J, Wincker P, Colot V, Aury JM. TE-Tracker: systematic identification of transposition events through whole-genome resequencing. Bmc Bioinformatics. 15: 377. PMID 25408240 DOI: 10.1186/s12859-014-0377-z |
0.477 |
|
| 2014 |
Alberti A, Belser C, Engelen S, Bertrand L, Orvain C, Brinas L, Cruaud C, Giraut L, Da Silva C, Firmo C, Aury JM, Wincker P. Comparison of library preparation methods reveals their impact on interpretation of metatranscriptomic data. Bmc Genomics. 15: 912. PMID 25331572 DOI: 10.1186/1471-2164-15-912 |
0.368 |
|
| 2014 |
Denoeud F, Carretero-Paulet L, Dereeper A, Droc G, Guyot R, Pietrella M, Zheng C, Alberti A, Anthony F, Aprea G, Aury JM, Bento P, Bernard M, Bocs S, Campa C, ... ... Wincker P, et al. The coffee genome provides insight into the convergent evolution of caffeine biosynthesis. Science (New York, N.Y.). 345: 1181-4. PMID 25190796 DOI: 10.1126/Science.1255274 |
0.474 |
|
| 2014 |
Chalhoub B, Denoeud F, Liu S, Parkin IA, Tang H, Wang X, Chiquet J, Belcram H, Tong C, Samans B, Corréa M, Da Silva C, Just J, Falentin C, Koh CS, ... ... Wincker P, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science (New York, N.Y.). 345: 950-3. PMID 25146293 DOI: 10.1126/Science.1253435 |
0.393 |
|
| 2014 |
Choulet F, Alberti A, Theil S, Glover N, Barbe V, Daron J, Pingault L, Sourdille P, Couloux A, Paux E, Leroy P, Mangenot S, Guilhot N, Le Gouis J, Balfourier F, ... ... Wincker P, et al. Structural and functional partitioning of bread wheat chromosome 3B. Science (New York, N.Y.). 345: 1249721. PMID 25035497 DOI: 10.1126/Science.1249721 |
0.378 |
|
| 2014 |
Wu GA, Prochnik S, Jenkins J, Salse J, Hellsten U, Murat F, Perrier X, Ruiz M, Scalabrin S, Terol J, Takita MA, Labadie K, Poulain J, Couloux A, Jabbari K, ... ... Wincker P, et al. Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication. Nature Biotechnology. 32: 656-62. PMID 24908277 DOI: 10.1038/Nbt.2906 |
0.444 |
|
| 2014 |
Humily F, Farrant GK, Marie D, Partensky F, Mazard S, Perennou M, Labadie K, Aury JM, Wincker P, Segui AN, Scanlan DJ, Garczarek L. Development of a targeted metagenomic approach to study a genomic region involved in light harvesting in marine Synechococcus. Fems Microbiology Ecology. 88: 231-49. PMID 24862161 DOI: 10.1111/1574-6941.12285 |
0.488 |
|
| 2014 |
Kunze G, Gaillardin C, Czernicka M, Durrens P, Martin T, Böer E, Gabaldón T, Cruz JA, Talla E, Marck C, Goffeau A, Barbe V, Baret P, Baronian K, Beier S, ... ... Wincker P, et al. The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest. Biotechnology For Biofuels. 7: 66. PMID 24834124 DOI: 10.1186/1754-6834-7-66 |
0.525 |
|
| 2014 |
Berthelot C, Brunet F, Chalopin D, Juanchich A, Bernard M, Noël B, Bento P, Da Silva C, Labadie K, Alberti A, Aury JM, Louis A, Dehais P, Bardou P, Montfort J, ... ... Wincker P, et al. The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates. Nature Communications. 5: 3657. PMID 24755649 DOI: 10.1038/ncomms4657 |
0.531 |
|
| 2014 |
Porcel BM, Denoeud F, Opperdoes F, Noel B, Madoui MA, Hammarton TC, Field MC, Da Silva C, Couloux A, Poulain J, Katinka M, Jabbari K, Aury JM, Campbell DA, Cintron R, ... ... Wincker P, et al. The streamlined genome of Phytomonas spp. relative to human pathogenic kinetoplastids reveals a parasite tailored for plants. Plos Genetics. 10: e1004007. PMID 24516393 DOI: 10.1371/Journal.Pgen.1004007 |
0.397 |
|
| 2014 |
Logares R, Sunagawa S, Salazar G, Cornejo-Castillo FM, Ferrera I, Sarmento H, Hingamp P, Ogata H, de Vargas C, Lima-Mendez G, Raes J, Poulain J, Jaillon O, Wincker P, Kandels-Lewis S, et al. Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities. Environmental Microbiology. 16: 2659-71. PMID 24102695 DOI: 10.1111/1462-2920.12250 |
0.325 |
|
| 2014 |
Chalhoub B, Denoeud F, Liu S, Parkin IAP, Tang H, Wang X, Chiquet J, Belcram H, Tong C, Samans B, Corréa M, Silva CD, Just J, Falentin C, Koh CS, ... ... Wincker P, et al. Erratum: Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome (Science (2014) 345:6199 (950-953)) Science. 345. DOI: 10.1126/Science.1260782 |
0.423 |
|
| 2013 |
Morales L, Noel B, Porcel B, Marcet-Houben M, Hullo MF, Sacerdot C, Tekaia F, Leh-Louis V, Despons L, Khanna V, Aury JM, Barbe V, Couloux A, Labadie K, Pelletier E, ... ... Wincker P, et al. Complete DNA sequence of Kuraishia capsulata illustrates novel genomic features among budding yeasts (Saccharomycotina). Genome Biology and Evolution. 5: 2524-39. PMID 24317973 DOI: 10.1093/Gbe/Evt201 |
0.551 |
|
| 2013 |
Gabaldón T, Martin T, Marcet-Houben M, Durrens P, Bolotin-Fukuhara M, Lespinet O, Arnaise S, Boisnard S, Aguileta G, Atanasova R, Bouchier C, Couloux A, Creno S, Almeida Cruz J, Devillers H, ... ... Wincker P, et al. Comparative genomics of emerging pathogens in the Candida glabrata clade. Bmc Genomics. 14: 623. PMID 24034898 DOI: 10.1186/1471-2164-14-623 |
0.373 |
|
| 2013 |
Ferreira de Carvalho J, Chelaifa H, Boutte J, Poulain J, Couloux A, Wincker P, Bellec A, Fourment J, Bergès H, Salmon A, Ainouche M. Exploring the genome of the salt-marsh Spartina maritima (Poaceae, Chloridoideae) through BAC end sequence analysis. Plant Molecular Biology. 83: 591-606. PMID 23877482 DOI: 10.1007/s11103-013-0111-7 |
0.501 |
|
| 2013 |
Flot JF, Hespeels B, Li X, Noel B, Arkhipova I, Danchin EG, Hejnol A, Henrissat B, Koszul R, Aury JM, Barbe V, Barthélémy RM, Bast J, Bazykin GA, Chabrol O, ... ... Wincker P, et al. Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga. Nature. 500: 453-7. PMID 23873043 DOI: 10.1038/Nature12326 |
0.383 |
|
| 2013 |
Solonenko SA, Ignacio-Espinoza JC, Alberti A, Cruaud C, Hallam S, Konstantinidis K, Tyson G, Wincker P, Sullivan MB. Sequencing platform and library preparation choices impact viral metagenomes. Bmc Genomics. 14: 320. PMID 23663384 DOI: 10.1186/1471-2164-14-320 |
0.35 |
|
| 2013 |
Hingamp P, Grimsley N, Acinas SG, Clerissi C, Subirana L, Poulain J, Ferrera I, Sarmento H, Villar E, Lima-Mendez G, Faust K, Sunagawa S, Claverie JM, Moreau H, Desdevises Y, ... ... Wincker P, et al. Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes. The Isme Journal. 7: 1678-95. PMID 23575371 DOI: 10.1038/Ismej.2013.59 |
0.456 |
|
| 2013 |
Collén J, Porcel B, Carré W, Ball SG, Chaparro C, Tonon T, Barbeyron T, Michel G, Noel B, Valentin K, Elias M, Artiguenave F, Arun A, Aury JM, Barbosa-Neto JF, ... ... Wincker P, et al. Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida. Proceedings of the National Academy of Sciences of the United States of America. 110: 5247-52. PMID 23503846 DOI: 10.1073/Pnas.1221259110 |
0.527 |
|
| 2013 |
Wincker P. Genomics and fruit crop selection. Nature Genetics. 45: 9-10. PMID 23268131 DOI: 10.1038/ng.2498 |
0.429 |
|
| 2013 |
Danks G, Campsteijn C, Parida M, Butcher S, Doddapaneni H, Fu B, Petrin R, Metpally R, Lenhard B, Wincker P, Chourrout D, Thompson EM, Manak JR. OikoBase: a genomics and developmental transcriptomics resource for the urochordate Oikopleura dioica. Nucleic Acids Research. 41: D845-53. PMID 23185044 DOI: 10.1093/Nar/Gks1159 |
0.528 |
|
| 2012 |
Ferreira de Carvalho J, Poulain J, Da Silva C, Wincker P, Michon-Coudouel S, Dheilly A, Naquin D, Boutte J, Salmon A, Ainouche M. Transcriptome de novo assembly from next-generation sequencing and comparative analyses in the hexaploid salt marsh species Spartina maritima and Spartina alterniflora (Poaceae). Heredity. 110: 181-93. PMID 23149455 DOI: 10.1038/hdy.2012.76 |
0.425 |
|
| 2012 |
Peyretaillade E, Parisot N, Polonais V, Terrat S, Denonfoux J, Dugat-Bony E, Wawrzyniak I, Biderre-Petit C, Mahul A, Rimour S, Gonçalves O, Bornes S, Delbac F, Chebance B, Duprat S, ... ... Wincker P, et al. Annotation of microsporidian genomes using transcriptional signals. Nature Communications. 3: 1137. PMID 23072807 DOI: 10.1038/ncomms2156 |
0.51 |
|
| 2012 |
Arnaiz O, Mathy N, Baudry C, Malinsky S, Aury JM, Denby Wilkes C, Garnier O, Labadie K, Lauderdale BE, Le Mouël A, Marmignon A, Nowacki M, Poulain J, Prajer M, Wincker P, et al. The Paramecium germline genome provides a niche for intragenic parasitic DNA: evolutionary dynamics of internal eliminated sequences. Plos Genetics. 8: e1002984. PMID 23071448 DOI: 10.1371/Journal.Pgen.1002984 |
0.435 |
|
| 2012 |
Moreau H, Verhelst B, Couloux A, Derelle E, Rombauts S, Grimsley N, Van Bel M, Poulain J, Katinka M, Hohmann-Marriott MF, Piganeau G, Rouzé P, Da Silva C, Wincker P, Van de Peer Y, et al. Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage. Genome Biology. 13: R74. PMID 22925495 DOI: 10.1186/Gb-2012-13-8-R74 |
0.432 |
|
| 2012 |
Cornillot E, Hadj-Kaddour K, Dassouli A, Noel B, Ranwez V, Vacherie B, Augagneur Y, Brès V, Duclos A, Randazzo S, Carcy B, Debierre-Grockiego F, Delbecq S, Moubri-Ménage K, Shams-Eldin H, ... ... Wincker P, et al. Sequencing of the smallest Apicomplexan genome from the human pathogen Babesia microti. Nucleic Acids Research. 40: 9102-14. PMID 22833609 DOI: 10.1093/Nar/Gks700 |
0.484 |
|
| 2012 |
D'Hont A, Denoeud F, Aury JM, Baurens FC, Carreel F, Garsmeur O, Noel B, Bocs S, Droc G, Rouard M, Da Silva C, Jabbari K, Cardi C, Poulain J, Souquet M, ... ... Wincker P, et al. The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. Nature. 488: 213-7. PMID 22801500 DOI: 10.1038/Nature11241 |
0.508 |
|
| 2012 |
Bon C, Berthonaud V, Maksud F, Labadie K, Poulain J, Artiguenave F, Wincker P, Aury JM, Elalouf JM. Coprolites as a source of information on the genome and diet of the cave hyena. Proceedings. Biological Sciences. 279: 2825-30. PMID 22456883 DOI: 10.1098/rspb.2012.0358 |
0.431 |
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| 2012 |
Aguileta G, Lengelle J, Chiapello H, Giraud T, Viaud M, Fournier E, Rodolphe F, Marthey S, Ducasse A, Gendrault A, Poulain J, Wincker P, Gout L. Genes under positive selection in a model plant pathogenic fungus, Botrytis. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 12: 987-96. PMID 22406010 DOI: 10.1016/j.meegid.2012.02.012 |
0.374 |
|
| 2012 |
Louis VL, Despons L, Friedrich A, Martin T, Durrens P, Casarégola S, Neuvéglise C, Fairhead C, Marck C, Cruz JA, Straub ML, Kugler V, Sacerdot C, Uzunov Z, Thierry A, ... ... Wincker P, et al. Pichia sorbitophila, an Interspecies Yeast Hybrid, Reveals Early Steps of Genome Resolution After Polyploidization. G3 (Bethesda, Md.). 2: 299-311. PMID 22384408 DOI: 10.1534/G3.111.000745 |
0.49 |
|
| 2012 |
Philippe R, Choulet F, Paux E, van Oeveren J, Tang J, Wittenberg AH, Janssen A, van Eijk MJ, Stormo K, Alberti A, Wincker P, Akhunov E, van der Vossen E, Feuillet C. Whole Genome Profiling provides a robust framework for physical mapping and sequencing in the highly complex and repetitive wheat genome. Bmc Genomics. 13: 47. PMID 22289472 DOI: 10.1186/1471-2164-13-47 |
0.345 |
|
| 2011 |
Young ND, Debellé F, Oldroyd GE, Geurts R, Cannon SB, Udvardi MK, Benedito VA, Mayer KF, Gouzy J, Schoof H, Van de Peer Y, Proost S, Cook DR, Meyers BC, Spannagl M, ... ... Wincker P, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature. 480: 520-4. PMID 22089132 DOI: 10.1038/Nature10625 |
0.498 |
|
| 2011 |
Amselem J, Cuomo CA, van Kan JA, Viaud M, Benito EP, Couloux A, Coutinho PM, de Vries RP, Dyer PS, Fillinger S, Fournier E, Gout L, Hahn M, Kohn L, Lapalu N, ... ... Wincker P, et al. Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea. Plos Genetics. 7: e1002230. PMID 21876677 DOI: 10.1371/Journal.Pgen.1002230 |
0.501 |
|
| 2011 |
Guédon E, Delorme C, Pons N, Cruaud C, Loux V, Couloux A, Gautier C, Sanchez N, Layec S, Galleron N, Almeida M, van de Guchte M, Kennedy SP, Ehrlich SD, Gibrat JF, ... Wincker P, et al. Complete genome sequence of the commensal Streptococcus salivarius strain JIM8777. Journal of Bacteriology. 193: 5024-5. PMID 21742871 DOI: 10.1128/JB.05390-11 |
0.39 |
|
| 2011 |
Genet C, Dehais P, Palti Y, Gao G, Gavory F, Wincker P, Quillet E, Boussaha M. Analysis of BAC-end sequences in rainbow trout: content characterization and assessment of synteny between trout and other fish genomes. Bmc Genomics. 12: 314. PMID 21672188 DOI: 10.1186/1471-2164-12-314 |
0.524 |
|
| 2011 |
Rouxel T, Grandaubert J, Hane JK, Hoede C, van de Wouw AP, Couloux A, Dominguez V, Anthouard V, Bally P, Bourras S, Cozijnsen AJ, Ciuffetti LM, Degrave A, Dilmaghani A, Duret L, ... ... Wincker P, et al. Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations. Nature Communications. 2: 202. PMID 21326234 DOI: 10.1038/Ncomms1189 |
0.524 |
|
| 2011 |
Tisserant E, Da Silva C, Kohler A, Morin E, Wincker P, Martin F. Deep RNA sequencing improved the structural annotation of the Tuber melanosporum transcriptome. The New Phytologist. 189: 883-91. PMID 21223284 DOI: 10.1111/j.1469-8137.2010.03597.x |
0.379 |
|
| 2011 |
Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, ... ... Wincker P, et al. The genome of Theobroma cacao Nature Genetics. 43: 101-108. PMID 21186351 DOI: 10.1038/Ng.736 |
0.439 |
|
| 2011 |
Cock JM, Collén J, Sterck L, Rouzé P, Scornet D, Anthouard V, Artiguenave F, Aury J, Billiau K, Bonnet E, Bothwell JH, Brillet L, Carre W, Coelho SM, Corre E, ... ... Wincker P, et al. Nature, nurture and the structure of macroalgal genomes European Journal of Phycology. 46: 39-39. DOI: 10.1080/09670262.2011.613165 |
0.436 |
|
| 2010 |
Denoeud F, Henriet S, Mungpakdee S, Aury JM, Da Silva C, Brinkmann H, Mikhaleva J, Olsen LC, Jubin C, Cañestro C, Bouquet JM, Danks G, Poulain J, Campsteijn C, Adamski M, ... ... Wincker P, et al. Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate. Science (New York, N.Y.). 330: 1381-5. PMID 21097902 DOI: 10.1126/Science.1194167 |
0.512 |
|
| 2010 |
Falentin H, Deutsch SM, Jan G, Loux V, Thierry A, Parayre S, Maillard MB, Dherbécourt J, Cousin FJ, Jardin J, Siguier P, Couloux A, Barbe V, Vacherie B, Wincker P, et al. The complete genome of Propionibacterium freudenreichii CIRM-BIA1, a hardy actinobacterium with food and probiotic applications. Plos One. 5: e11748. PMID 20668525 DOI: 10.1371/journal.pone.0011748 |
0.375 |
|
| 2010 |
Oulion S, Debiais-Thibaud M, d'Aubenton-Carafa Y, Thermes C, Da Silva C, Bernard-Samain S, Gavory F, Wincker P, Mazan S, Casane D. Evolution of Hox gene clusters in gnathostomes: insights from a survey of a shark (Scyliorhinus canicula) transcriptome. Molecular Biology and Evolution. 27: 2829-38. PMID 20616144 DOI: 10.1093/Molbev/Msq172 |
0.339 |
|
| 2010 |
Macagno ER, Gaasterland T, Edsall L, Bafna V, Soares MB, Scheetz T, Casavant T, Da Silva C, Wincker P, Tasiemski A, Salzet M. Construction of a medicinal leech transcriptome database and its application to the identification of leech homologs of neural and innate immune genes. Bmc Genomics. 11: 407. PMID 20579359 DOI: 10.1186/1471-2164-11-407 |
0.394 |
|
| 2010 |
Mekouar M, Blanc-Lenfle I, Ozanne C, Da Silva C, Cruaud C, Wincker P, Gaillardin C, Neuvéglise C. Detection and analysis of alternative splicing in Yarrowia lipolytica reveal structural constraints facilitating nonsense-mediated decay of intron-retaining transcripts. Genome Biology. 11: R65. PMID 20573210 DOI: 10.1186/gb-2010-11-6-r65 |
0.301 |
|
| 2010 |
Volkoff AN, Jouan V, Urbach S, Samain S, Bergoin M, Wincker P, Demettre E, Cousserans F, Provost B, Coulibaly F, Legeai F, Béliveau C, Cusson M, Gyapay G, Drezen JM. Analysis of virion structural components reveals vestiges of the ancestral ichnovirus genome. Plos Pathogens. 6: e1000923. PMID 20523890 DOI: 10.1371/journal.ppat.1000923 |
0.318 |
|
| 2010 |
Cock JM, Sterck L, Rouzé P, Scornet D, Allen AE, Amoutzias G, Anthouard V, Artiguenave F, Aury JM, Badger JH, Beszteri B, Billiau K, Bonnet E, Bothwell JH, Bowler C, ... ... Wincker P, et al. The Ectocarpus genome and the independent evolution of multicellularity in brown algae. Nature. 465: 617-21. PMID 20520714 DOI: 10.1038/Nature09016 |
0.501 |
|
| 2010 |
Martin F, Kohler A, Murat C, Balestrini R, Coutinho PM, Jaillon O, Montanini B, Morin E, Noel B, Percudani R, Porcel B, Rubini A, Amicucci A, Amselem J, Anthouard V, ... ... Wincker P, et al. Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis. Nature. 464: 1033-8. PMID 20348908 DOI: 10.1038/Nature08867 |
0.494 |
|
| 2010 |
Argout X, Salse J, Aury JM, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Guiltinan M, Maximova S, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, ... ... Wincker P, et al. Deciphering the genome structure and paleohistory of Theobroma cacao Nature Precedings. 5: 1-1. DOI: 10.1038/Npre.2010.4908.1 |
0.443 |
|
| 2009 |
Peyretaillade E, Gonçalves O, Terrat S, Dugat-Bony E, Wincker P, Cornman RS, Evans JD, Delbac F, Peyret P. Identification of transcriptional signals in Encephalitozoon cuniculi widespread among Microsporidia phylum: support for accurate structural genome annotation. Bmc Genomics. 10: 607. PMID 20003517 DOI: 10.1186/1471-2164-10-607 |
0.497 |
|
| 2009 |
von Dassow P, Ogata H, Probert I, Wincker P, Da Silva C, Audic S, Claverie JM, de Vargas C. Transcriptome analysis of functional differentiation between haploid and diploid cells of Emiliania huxleyi, a globally significant photosynthetic calcifying cell. Genome Biology. 10: R114. PMID 19832986 DOI: 10.1186/gb-2009-10-10-r114 |
0.324 |
|
| 2009 |
Novo M, Bigey F, Beyne E, Galeote V, Gavory F, Mallet S, Cambon B, Legras JL, Wincker P, Casaregola S, Dequin S. Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118. Proceedings of the National Academy of Sciences of the United States of America. 106: 16333-8. PMID 19805302 DOI: 10.1073/pnas.0904673106 |
0.476 |
|
| 2009 |
Fleury E, Huvet A, Lelong C, de Lorgeril J, Boulo V, Gueguen Y, Bachère E, Tanguy A, Moraga D, Fabioux C, Lindeque P, Shaw J, Reinhardt R, Prunet P, Davey G, ... ... Wincker P, et al. Generation and analysis of a 29,745 unique Expressed Sequence Tags from the Pacific oyster (Crassostrea gigas) assembled into a publicly accessible database: the GigasDatabase. Bmc Genomics. 10: 341. PMID 19640306 DOI: 10.1186/1471-2164-10-341 |
0.455 |
|
| 2009 |
Jung PP, Schacherer J, Souciet JL, Potier S, Wincker P, de Montigny J. The complete mitochondrial genome of the yeast Pichia sorbitophila. Fems Yeast Research. 9: 903-10. PMID 19594828 DOI: 10.1111/J.1567-1364.2009.00540.X |
0.34 |
|
| 2009 |
Zivanovic Y, Armengaud J, Lagorce A, Leplat C, Guérin P, Dutertre M, Anthouard V, Forterre P, Wincker P, Confalonieri F. Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the Archaea. Genome Biology. 10: R70. PMID 19558674 DOI: 10.1186/gb-2009-10-6-r70 |
0.525 |
|
| 2009 |
Souciet JL, Dujon B, Gaillardin C, Johnston M, Baret PV, Cliften P, Sherman DJ, Weissenbach J, Westhof E, Wincker P, Jubin C, Poulain J, Barbe V, Ségurens B, et al. Comparative genomics of protoploid Saccharomycetaceae. Genome Research. 19: 1696-709. PMID 19525356 DOI: 10.1101/Gr.091546.109 |
0.566 |
|
| 2009 |
Florent I, Porcel BM, Guillaume E, Da Silva C, Artiguenave F, Maréchal E, Bréhélin L, Gascuel O, Charneau S, Wincker P, Grellier P. A Plasmodium falciparum FcB1-schizont-EST collection providing clues to schizont specific gene structure and polymorphism. Bmc Genomics. 10: 235. PMID 19454033 DOI: 10.1186/1471-2164-10-235 |
0.31 |
|
| 2009 |
Rengel D, San Clemente H, Servant F, Ladouce N, Paux E, Wincker P, Couloux A, Sivadon P, Grima-Pettenati J. A new genomic resource dedicated to wood formation in Eucalyptus. Bmc Plant Biology. 9: 36. PMID 19327132 DOI: 10.1186/1471-2229-9-36 |
0.398 |
|
| 2008 |
Coolen M, Menuet A, Chassoux D, Compagnucci C, Henry S, Lévèque L, Da Silva C, Gavory F, Samain S, Wincker P, Thermes C, D'Aubenton-Carafa Y, Rodriguez-Moldes I, Naylor G, Depew M, et al. The Dogfish Scyliorhinus canicula: A Reference in Jawed Vertebrates. Csh Protocols. 2008: pdb.emo111. PMID 21356737 DOI: 10.1101/Pdb.Emo111 |
0.409 |
|
| 2008 |
Jaillon O, Aury JM, Wincker P. "Changing by doubling", the impact of Whole Genome Duplications in the evolution of eukaryotes. Comptes Rendus Biologies. 332: 241-53. PMID 19281955 DOI: 10.1016/j.crvi.2008.07.007 |
0.456 |
|
| 2008 |
Aury JM, Cruaud C, Barbe V, Rogier O, Mangenot S, Samson G, Poulain J, Anthouard V, Scarpelli C, Artiguenave F, Wincker P. High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies. Bmc Genomics. 9: 603. PMID 19087275 DOI: 10.1186/1471-2164-9-603 |
0.336 |
|
| 2008 |
Hanriot L, Keime C, Gay N, Faure C, Dossat C, Wincker P, Scoté-Blachon C, Peyron C, Gandrillon O. A combination of LongSAGE with Solexa sequencing is well suited to explore the depth and the complexity of transcriptome. Bmc Genomics. 9: 418. PMID 18796152 DOI: 10.1186/1471-2164-9-418 |
0.316 |
|
| 2008 |
Lescot M, Audic S, Robert C, Nguyen TT, Blanc G, Cutler SJ, Wincker P, Couloux A, Claverie JM, Raoult D, Drancourt M. The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degraded subset of tick-borne Borrelia duttonii. Plos Genetics. 4: e1000185. PMID 18787695 DOI: 10.1371/Journal.Pgen.1000185 |
0.461 |
|
| 2008 |
Abad P, Gouzy J, Aury JM, Castagnone-Sereno P, Danchin EG, Deleury E, Perfus-Barbeoch L, Anthouard V, Artiguenave F, Blok VC, Caillaud MC, Coutinho PM, Dasilva C, De Luca F, Deau F, ... ... Wincker P, et al. Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita. Nature Biotechnology. 26: 909-15. PMID 18660804 DOI: 10.1038/Nbt.1482 |
0.405 |
|
| 2008 |
Luro FL, Costantino G, Terol J, Argout X, Allario T, Wincker P, Talon M, Ollitrault P, Morillon R. Transferability of the EST-SSRs developed on Nules clementine (Citrus clementina Hort ex Tan) to other Citrus species and their effectiveness for genetic mapping. Bmc Genomics. 9: 287. PMID 18558001 DOI: 10.1186/1471-2164-9-287 |
0.313 |
|
| 2008 |
Marlétaz F, Gilles A, Caubit X, Perez Y, Dossat C, Samain S, Gyapay G, Wincker P, Le Parco Y. Chaetognath transcriptome reveals ancestral and unique features among bilaterians. Genome Biology. 9: R94. PMID 18533022 DOI: 10.1186/Gb-2008-9-6-R94 |
0.32 |
|
| 2008 |
Dufresne A, Ostrowski M, Scanlan DJ, Garczarek L, Mazard S, Palenik BP, Paulsen IT, de Marsac NT, Wincker P, Dossat C, Ferriera S, Johnson J, Post AF, Hess WR, Partensky F. Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria. Genome Biology. 9: R90. PMID 18507822 DOI: 10.1186/Gb-2008-9-5-R90 |
0.537 |
|
| 2008 |
Espagne E, Lespinet O, Malagnac F, Da Silva C, Jaillon O, Porcel BM, Couloux A, Aury JM, Ségurens B, Poulain J, Anthouard V, Grossetete S, Khalili H, Coppin E, Déquard-Chablat M, ... ... Wincker P, et al. The genome sequence of the model ascomycete fungus Podospora anserina. Genome Biology. 9: R77. PMID 18460219 DOI: 10.1186/gb-2008-9-5-r77 |
0.328 |
|
| 2008 |
Bézier A, Herbinière J, Serbielle C, Lesobre J, Wincker P, Huguet E, Drezen JM. Bracovirus gene products are highly divergent from insect proteins. Archives of Insect Biochemistry and Physiology. 67: 172-87. PMID 18348209 DOI: 10.1002/arch.20219 |
0.332 |
|
| 2008 |
Gaulin E, Madoui MA, Bottin A, Jacquet C, Mathé C, Couloux A, Wincker P, Dumas B. Transcriptome of Aphanomyces euteiches: new oomycete putative pathogenicity factors and metabolic pathways. Plos One. 3: e1723. PMID 18320043 DOI: 10.1371/journal.pone.0001723 |
0.322 |
|
| 2008 |
Duret L, Cohen J, Jubin C, Dessen P, Goût JF, Mousset S, Aury JM, Jaillon O, Noël B, Arnaiz O, Bétermier M, Wincker P, Meyer E, Sperling L. Analysis of sequence variability in the macronuclear DNA of Paramecium tetraurelia: a somatic view of the germline. Genome Research. 18: 585-96. PMID 18256234 DOI: 10.1101/Gr.074534.107 |
0.422 |
|
| 2008 |
Belkorchia A, Biderre C, Militon C, Polonais V, Wincker P, Jubin C, Delbac F, Peyretaillade E, Peyret P. In vitro propagation of the microsporidian pathogen Brachiola algerae and studies of its chromosome and ribosomal DNA organization in the context of the complete genome sequencing project. Parasitology International. 57: 62-71. PMID 17977059 DOI: 10.1016/j.parint.2007.09.002 |
0.488 |
|
| 2008 |
Lapidus A, Goltsman E, Auger S, Galleron N, Ségurens B, Dossat C, Land ML, Broussolle V, Brillard J, Guinebretiere MH, Sanchis V, Nguen-The C, Lereclus D, Richardson P, Wincker P, et al. Extending the Bacillus cereus group genomics to putative food-borne pathogens of different toxicity. Chemico-Biological Interactions. 171: 236-49. PMID 17434157 DOI: 10.1016/j.cbi.2007.03.003 |
0.403 |
|
| 2007 |
Madoui MA, Gaulin E, Mathé C, San Clemente H, Couloux A, Wincker P, Dumas B. AphanoDB: a genomic resource for Aphanomyces pathogens. Bmc Genomics. 8: 471. PMID 18096036 DOI: 10.1186/1471-2164-8-471 |
0.456 |
|
| 2007 |
Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, ... ... Wincker P, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature. 449: 463-7. PMID 17721507 DOI: 10.1038/Nature06148 |
0.491 |
|
| 2007 |
Yockteng R, Marthey S, Chiapello H, Gendrault A, Hood ME, Rodolphe F, Devier B, Wincker P, Dossat C, Giraud T. Expressed sequences tags of the anther smut fungus, Microbotryum violaceum, identify mating and pathogenicity genes. Bmc Genomics. 8: 272. PMID 17692127 DOI: 10.1186/1471-2164-8-272 |
0.387 |
|
| 2007 |
Fierro AC, Thuret R, Coen L, Perron M, Demeneix BA, Wegnez M, Gyapay G, Weissenbach J, Wincker P, Mazabraud A, Pollet N. Exploring nervous system transcriptomes during embryogenesis and metamorphosis in Xenopus tropicalis using EST analysis. Bmc Genomics. 8: 118. PMID 17506875 DOI: 10.1186/1471-2164-8-118 |
0.448 |
|
| 2006 |
Aury JM, Jaillon O, Duret L, Noel B, Jubin C, Porcel BM, Ségurens B, Daubin V, Anthouard V, Aiach N, Arnaiz O, Billaut A, Beisson J, Blanc I, Bouhouche K, ... ... Wincker P, et al. Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia. Nature. 444: 171-8. PMID 17086204 DOI: 10.1038/Nature05230 |
0.44 |
|
| 2006 |
Vodovar N, Vallenet D, Cruveiller S, Rouy Z, Barbe V, Acosta C, Cattolico L, Jubin C, Lajus A, Segurens B, Vacherie B, Wincker P, Weissenbach J, Lemaitre B, Médigue C, et al. Complete genome sequence of the entomopathogenic and metabolically versatile soil bacterium Pseudomonas entomophila. Nature Biotechnology. 24: 673-9. PMID 16699499 DOI: 10.1038/Nbt1212 |
0.449 |
|
| 2006 |
Thill G, Castelli V, Pallud S, Salanoubat M, Wincker P, de la Grange P, Auboeuf D, Schächter V, Weissenbach J. ASEtrap: a biological method for speeding up the exploration of spliceomes. Genome Research. 16: 776-86. PMID 16682744 DOI: 10.1101/GR.5063306 |
0.315 |
|
| 2006 |
Strous M, Pelletier E, Mangenot S, Rattei T, Lehner A, Taylor MW, Horn M, Daims H, Bartol-Mavel D, Wincker P, Barbe V, Fonknechten N, Vallenet D, Segurens B, Schenowitz-Truong C, et al. Deciphering the evolution and metabolism of an anammox bacterium from a community genome. Nature. 440: 790-4. PMID 16598256 DOI: 10.1038/Nature04647 |
0.5 |
|
| 2005 |
Raible F, Tessmar-Raible K, Osoegawa K, Wincker P, Jubin C, Balavoine G, Ferrier D, Benes V, de Jong P, Weissenbach J, Bork P, Arendt D. Vertebrate-type intron-rich genes in the marine annelid Platynereis dumerilii. Science (New York, N.Y.). 310: 1325-6. PMID 16311335 DOI: 10.1126/Science.1119089 |
0.498 |
|
| 2005 |
Eiglmeier K, Wincker P, Cattolico L, Anthouard V, Holm I, Eckenberg R, Quesneville H, Jaillon O, Collins FH, Weissenbach J, Brey PT, Roth CW. Comparative analysis of BAC and whole genome shotgun sequences from an Anopheles gambiae region related to Plasmodium encapsulation. Insect Biochemistry and Molecular Biology. 35: 799-814. PMID 15944077 DOI: 10.1016/J.Ibmb.2005.02.020 |
0.487 |
|
| 2005 |
Gomez SM, Eiglmeier K, Segurens B, Dehoux P, Couloux A, Scarpelli C, Wincker P, Weissenbach J, Brey PT, Roth CW. Pilot Anopheles gambiae full-length cDNA study: sequencing and initial characterization of 35,575 clones. Genome Biology. 6: R39. PMID 15833126 DOI: 10.1186/gb-2005-6-4-r39 |
0.353 |
|
| 2005 |
Neuvéglise C, Chalvet F, Wincker P, Gaillardin C, Casaregola S. Mutator-like element in the yeast Yarrowia lipolytica displays multiple alternative splicings. Eukaryotic Cell. 4: 615-24. PMID 15755923 DOI: 10.1128/EC.4.3.615-624.2005 |
0.328 |
|
| 2005 |
Zivanovic Y, Wincker P, Vacherie B, Bolotin-Fukuhara M, Fukuhara H. Complete nucleotide sequence of the mitochondrial DNA from Kluyveromyces lactis Fems Yeast Research. 5: 315-322. PMID 15691736 DOI: 10.1016/j.femsyr.2004.09.003 |
0.389 |
|
| 2005 |
Edvardsen RB, Seo HC, Jensen MF, Mialon A, Mikhaleva J, Bjordal M, Cartry J, Reinhardt R, Weissenbach J, Wincker P, Chourrout D. Remodelling of the homeobox gene complement in the tunicate Oikopleura dioica. Current Biology : Cb. 15: R12-3. PMID 15649342 DOI: 10.1016/j.cub.2004.12.010 |
0.44 |
|
| 2005 |
Choisne N, Demange N, Orjeda G, Samain S, D'Hont A, Cattolico L, Pelletier E, Couloux A, Segurens B, Wincker P, Scarpelli C, Weissenbach J, Salanoubat M, Singh NK, Mohapatra T, et al. The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications Bmc Biology. 3. DOI: 10.1186/1741-7007-3-20 |
0.397 |
|
| 2004 |
Barbe V, Vallenet D, Fonknechten N, Kreimeyer A, Oztas S, Labarre L, Cruveiller S, Robert C, Duprat S, Wincker P, Ornston LN, Weissenbach J, Marlière P, Cohen GN, Médigue C. Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium. Nucleic Acids Research. 32: 5766-79. PMID 15514110 DOI: 10.1093/Nar/Gkh910 |
0.477 |
|
| 2004 |
Jaillon O, Aury JM, Brunet F, Petit JL, Stange-Thomann N, Mauceli E, Bouneau L, Fischer C, Ozouf-Costaz C, Bernot A, Nicaud S, Jaffe D, Fisher S, Lutfalla G, Dossat C, ... ... Wincker P, et al. Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature. 431: 946-57. PMID 15496914 DOI: 10.1038/Nature03025 |
0.5 |
|
| 2004 |
Zagulski M, Nowak JK, Le Mouël A, Nowacki M, Migdalski A, Gromadka R, Noël B, Blanc I, Dessen P, Wincker P, Keller AM, Cohen J, Meyer E, Sperling L. High coding density on the largest Paramecium tetraurelia somatic chromosome. Current Biology : Cb. 14: 1397-404. PMID 15296759 DOI: 10.1016/j.cub.2004.07.029 |
0.362 |
|
| 2004 |
Dujon B, Sherman D, Fischer G, Durrens P, Casaregola S, Lafontaine I, De Montigny J, Marck C, Neuvéglise C, Talla E, Goffard N, Frangeul L, Aigle M, Anthouard V, Babour A, ... ... Wincker P, et al. Genome evolution in yeasts. Nature. 430: 35-44. PMID 15229592 DOI: 10.1038/Nature02579 |
0.563 |
|
| 2004 |
Castelli V, Aury JM, Jaillon O, Wincker P, Clepet C, Menard M, Cruaud C, Quétier F, Scarpelli C, Schächter V, Temple G, Caboche M, Weissenbach J, Salanoubat M. Whole genome sequence comparisons and "full-length" cDNA sequences: a combined approach to evaluate and improve Arabidopsis genome annotation. Genome Research. 14: 406-13. PMID 14993207 DOI: 10.1101/GR.1515604 |
0.528 |
|
| 2004 |
Porcel BM, Delfour O, Castelli V, De Berardinis V, Friedlander L, Cruaud C, Ureta-Vidal A, Scarpelli C, Wincker P, Schächter V, Saurin W, Gyapay G, Salanoubat M, Weissenbach J. Numerous novel annotations of the human genome sequence supported by a 5'-end-enriched cDNA collection. Genome Research. 14: 463-71. PMID 14962985 DOI: 10.1101/gr.1481104 |
0.44 |
|
| 2003 |
Jaillon O, Aury JM, Roest Crollius H, Salanoubat M, Wincker P, Dossat C, Castelli V, Boudet N, Samair S, Eckenberg R, Bonneval S, Saurin W, Scarpelli C, Schächter V, Weissenbach J. Genome-wide analyses based on comparative genomics. Cold Spring Harbor Symposia On Quantitative Biology. 68: 275-82. PMID 15338627 DOI: 10.1101/sqb.2003.68.275 |
0.513 |
|
| 2003 |
Dufresne A, Salanoubat M, Partensky F, Artiguenave F, Axmann IM, Barbe V, Duprat S, Galperin MY, Koonin EV, Le Gall F, Makarova KS, Ostrowski M, Oztas S, Robert C, Rogozin IB, ... ... Wincker P, et al. Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome. Proceedings of the National Academy of Sciences of the United States of America. 100: 10020-5. PMID 12917486 DOI: 10.1073/Pnas.1733211100 |
0.523 |
|
| 2003 |
Jaillon O, Dossat C, Eckenberg R, Eiglmeier K, Segurens B, Aury JM, Roth CW, Scarpelli C, Brey PT, Weissenbach J, Wincker P. Assessing the Drosophila melanogaster and Anopheles gambiae genome annotations using genome-wide sequence comparisons. Genome Research. 13: 1595-9. PMID 12840038 DOI: 10.1101/gr.922503 |
0.549 |
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| 2003 |
Roth CW, Holm I, Graille M, Dehoux P, Rzhetsky A, Wincker P, Weissenbach J, Brey PT. Identification of the Anopheles gambiae ATP-binding cassette transporter superfamily genes. Molecules and Cells. 15: 150-8. PMID 12803476 |
0.338 |
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| 2003 |
Koszul R, Malpertuy A, Frangeul L, Bouchier C, Wincker P, Thierry A, Duthoy S, Ferris S, Hennequin C, Dujon B. The complete mitochondrial genome sequence of the pathogenic yeast Candida (Torulopsis) glabrata. Febs Letters. 534: 39-48. PMID 12527359 DOI: 10.1016/S0014-5793(02)03749-3 |
0.42 |
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| 2003 |
Heilig R, Eckenberg R, Petit JL, Fonknechten N, Da Silva C, Cattolico L, Levy M, Barbe V, de Berardinis V, Ureta-Vidal A, Pelletier E, Vico V, Anthouard V, Rowen L, Madan A, ... ... Wincker P, et al. The DNA sequence and analysis of human chromosome 14. Nature. 421: 601-7. PMID 12508121 DOI: 10.1038/nature01348 |
0.313 |
|
| 2002 |
Zdobnov EM, von Mering C, Letunic I, Torrents D, Suyama M, Copley RR, Christophides GK, Thomasova D, Holt RA, Subramanian GM, Mueller HM, Dimopoulos G, Law JH, Wells MA, Birney E, ... ... Wincker P, et al. Comparative genome and proteome analysis of Anopheles gambiae and Drosophila melanogaster. Science (New York, N.Y.). 298: 149-59. PMID 12364792 DOI: 10.1126/Science.1077061 |
0.473 |
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| 2002 |
Holt RA, Subramanian GM, Halpern A, Sutton GG, Charlab R, Nusskern DR, Wincker P, Clark AG, Ribeiro JM, Wides R, Salzberg SL, Loftus B, Yandell M, Majoros WH, Rusch DB, et al. The genome sequence of the malaria mosquito Anopheles gambiae. Science (New York, N.Y.). 298: 129-49. PMID 12364791 DOI: 10.1126/Science.1076181 |
0.456 |
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| 2002 |
Salanoubat M, Genin S, Artiguenave F, Gouzy J, Mangenot S, Arlat M, Billault A, Brottier P, Camus JC, Cattolico L, Chandler M, Choisne N, Claudel-Renard C, Cunnac S, Demange N, ... ... Wincker P, et al. Genome sequence of the plant pathogen Ralstonia solanacearum. Nature. 415: 497-502. PMID 11823852 DOI: 10.1038/415497a |
0.506 |
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| 2001 |
Katinka MD, Duprat S, Cornillot E, Méténier G, Thomarat F, Prensier G, Barbe V, Peyretaillade E, Brottier P, Wincker P, Delbac F, El Alaoui H, Peyret P, Saurin W, Gouy M, et al. Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi. Nature. 414: 450-3. PMID 11719806 DOI: 10.1038/35106579 |
0.467 |
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| 2001 |
Bolotin A, Wincker P, Mauger S, Jaillon O, Malarme K, Weissenbach J, Ehrlich SD, Sorokin A. The complete genome sequence of the lactic acid bacterium Lactococcus lactis ssp. lactis IL1403. Genome Research. 11: 731-53. PMID 11337471 DOI: 10.1101/gr.169701 |
0.496 |
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| 2001 |
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W, Funke R, Gage D, Harris K, Heaford A, Howland J, ... ... Wincker P, et al. Initial sequencing and analysis of the human genome. Nature. 409: 860-921. PMID 11237011 DOI: 10.1038/35057062 |
0.451 |
|
| 2001 |
Gaillardin C, Duchateau-Nguyen G, Tekaia F, Llorente B, Casaregola S, Toffano-Nioche C, Aigle M, Artiguenave F, Blandin G, Bolotin-Fukuhara M, Bon E, Brottier P, de Montigny J, Dujon B, Durrens P, ... ... Wincker P, et al. Genomic exploration of the hemiascomycetous yeasts: 21. Comparative functional classification of genes. Febs Letters. 487: 134-49. PMID 11152896 DOI: 10.1016/S0014-5793(00)02292-4 |
0.302 |
|
| 2001 |
Llorente B, Durrens P, Malpertuy A, Aigle M, Artiguenave F, Blandin G, Bolotin-Fukuhara M, Bon E, Brottier P, Casaregola S, Dujon B, de Montigny J, Lépingle A, Neuvéglise C, Ozier-Kalogeropoulos O, ... ... Wincker P, et al. Genomic exploration of the hemiascomycetous yeasts: 20. Evolution of gene redundancy compared to Saccharomyces cerevisiae. Febs Letters. 487: 122-33. PMID 11152895 DOI: 10.1016/S0014-5793(00)02291-2 |
0.461 |
|
| 2001 |
Malpertuy A, Tekaia F, Casarégola S, Aigle M, Artiguenave F, Blandin G, Bolotin-Fukuhara M, Bon E, Brottier P, de Montigny J, Durrens P, Gaillardin C, Lépingle A, Llorente B, Neuvéglise C, ... ... Wincker P, et al. Genomic exploration of the hemiascomycetous yeasts: 19. Ascomycetes-specific genes. Febs Letters. 487: 113-21. PMID 11152894 DOI: 10.1016/S0014-5793(00)02290-0 |
0.391 |
|
| 2001 |
Llorente B, Malpertuy A, Neuvéglise C, de Montigny J, Aigle M, Artiguenave F, Blandin G, Bolotin-Fukuhara M, Bon E, Brottier P, Casaregola S, Durrens P, Gaillardin C, Lépingle A, Ozier-Kalogéropoulos O, ... ... Wincker P, et al. Genomic exploration of the hemiascomycetous yeasts: 18. Comparative analysis of chromosome maps and synteny with Saccharomyces cerevisiae. Febs Letters. 487: 101-12. PMID 11152893 DOI: 10.1016/S0014-5793(00)02289-4 |
0.403 |
|
| 2001 |
Casaregola S, Neuvéglise C, Lépingle A, Bon E, Feynerol C, Artiguenave F, Wincker P, Gaillardin C. Genomic exploration of the hemiascomycetous yeasts: 17. Yarrowia lipolytica. Febs Letters. 487: 95-100. PMID 11152892 DOI: 10.1016/S0014-5793(00)02288-2 |
0.409 |
|
| 2001 |
de Montigny J, Spehner C, Souciet J, Tekaia F, Dujon B, Wincker P, Artiguenave F, Potier S. Genomic exploration of the hemiascomycetous yeasts: 15. Pichia sorbitophila. Febs Letters. 487: 87-90. PMID 11152890 DOI: 10.1016/S0014-5793(00)02286-9 |
0.438 |
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| 2001 |
Lépingle A, Casaregola S, Neuvéglise C, Bon E, Nguyen H, Artiguenave F, Wincker P, Gaillardin C. Genomic exploration of the hemiascomycetous yeasts: 14. Debaryomyces hansenii var. hansenii. Febs Letters. 487: 82-6. PMID 11152889 DOI: 10.1016/S0014-5793(00)02285-7 |
0.463 |
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| 2001 |
Blandin G, Llorente B, Malpertuy A, Wincker P, Artiguenave F, Dujon B. Genomic exploration of the hemiascomycetous yeasts: 13. Pichia angusta. Febs Letters. 487: 76-81. PMID 11152888 DOI: 10.1016/S0014-5793(00)02284-5 |
0.413 |
|
| 2001 |
Llorente B, Malpertuy A, Blandin G, Artiguenave F, Wincker P, Dujon B. Genomic exploration of the hemiascomycetous yeasts: 12. Kluyveromyces marxianus var. marxianus. Febs Letters. 487: 71-5. PMID 11152887 DOI: 10.1016/S0014-5793(00)02283-3 |
0.416 |
|
| 2001 |
Bolotin-Fukuhara M, Toffano-Nioche C, Artiguenave F, Duchateau-Nguyen G, Lemaire M, Marmeisse R, Montrocher R, Robert C, Termier M, Wincker P, Wésolowski-Louvel M. Genomic exploration of the hemiascomycetous yeasts: 11. Kluyveromyces lactis. Febs Letters. 487: 66-70. PMID 11152886 DOI: 10.1016/S0014-5793(00)02282-1 |
0.451 |
|
| 2001 |
Malpertuy A, Llorente B, Blandin G, Artiguenave F, Wincker P, Dujon B. Genomic exploration of the hemiascomycetous yeasts: 10. Kluyveromyces thermotolerans. Febs Letters. 487: 61-5. PMID 11152885 DOI: 10.1016/S0014-5793(00)02281-X |
0.454 |
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| 2001 |
Neuvéglise C, Bon E, Lépingle A, Wincker P, Artiguenave F, Gaillardin C, Casarégola S. Genomic exploration of the hemiascomycetous yeasts: 9. Saccharomyces kluyveri. Febs Letters. 487: 56-60. PMID 11152884 DOI: 10.1016/S0014-5793(00)02280-8 |
0.452 |
|
| 2001 |
Casaregola S, Lépingle A, Bon E, Neuvéglise C, Nguyen H, Artiguenave F, Wincker P, Gaillardin C. Genomic exploration of the hemiascomycetous yeasts: 7. Saccharomyces servazzii. Febs Letters. 487: 47-51. PMID 11152882 DOI: 10.1016/S0014-5793(00)02278-X |
0.353 |
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| 2001 |
Bon E, Neuvéglise C, Lépingle A, Wincker P, Artiguenave F, Gaillardin C, Casaregola S. Genomic exploration of the hemiascomycetous yeasts: 6. Saccharomyces exiguus. Febs Letters. 487: 42-6. PMID 11152881 DOI: 10.1016/S0014-5793(00)02277-8 |
0.444 |
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| 2001 |
Bon E, Neuvéglise C, Casaregola S, Artiguenave F, Wincker P, Aigle M, Durrens P. Genomic exploration of the hemiascomycetous yeasts: 5. Saccharomyces bayanus var. uvarum. Febs Letters. 487: 37-41. PMID 11152880 DOI: 10.1016/S0014-5793(00)02276-6 |
0.367 |
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| 2001 |
Artiguenave F, Wincker P, Brottier P, Duprat S, Jovelin F, Scarpelli C, Verdier J, Vico V, Weissenbach J, Saurin W. Genomic exploration of the hemiascomycetous yeasts: 2. Data generation and processing. Febs Letters. 487: 13-6. PMID 11152877 DOI: 10.1016/S0014-5793(00)02273-0 |
0.318 |
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| 2001 |
Souciet J, Aigle M, Artiguenave F, Blandin G, Bolotin-Fukuhara M, Bon E, Brottier P, Casaregola S, de Montigny J, Dujon B, Durrens P, Gaillardin C, Lépingle A, Llorente B, Malpertuy A, ... ... Wincker P, et al. Genomic exploration of the hemiascomycetous yeasts: 1. A set of yeast species for molecular evolution studies. Febs Letters. 487: 3-12. PMID 11152876 DOI: 10.1016/S0014-5793(00)02272-9 |
0.511 |
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| 2001 |
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, Fitzhugh W, Funke R, Gage D, Harris K, Heaford A, Howland J, ... ... Wincker P, et al. Erratum: Initial sequencing and analysis of the human genome: International Human Genome Sequencing Consortium (Nature (2001) 409 (860-921)) Nature. 412: 565-566. DOI: 10.1038/35087627 |
0.452 |
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| 2000 |
Blandin G, Ozier-Kalogeropoulos O, Wincker P, Artiguenave F, Dujon B. Genomic exploration of the hemiascomycetous yeasts: 16. Candida tropicalis. Febs Letters. 487: 91-4. PMID 11152891 DOI: 10.1016/S0014-5793(00)02287-0 |
0.461 |
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| 2000 |
de Montigny J, Straub M, Potier S, Tekaia F, Dujon B, Wincker P, Artiguenave F, Souciet J. Genomic exploration of the hemiascomycetous yeasts: 8. Zygosaccharomyces rouxii. Febs Letters. 487: 52-5. PMID 11152883 DOI: 10.1016/S0014-5793(00)02279-1 |
0.455 |
|
| 2000 |
Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Blöcker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell LA, Mache R, Puigdomènech P, ... ... Wincker P, et al. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Nature. 408: 820-2. PMID 11130713 DOI: 10.1038/35048706 |
0.422 |
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| 2000 |
Roest Crollius H, Jaillon O, Bernot A, Dasilva C, Bouneau L, Fischer C, Fizames C, Wincker P, Brottier P, Quétier F, Saurin W, Weissenbach J. Estimate of human gene number provided by genome-wide analysis using Tetraodon nigroviridis DNA sequence. Nature Genetics. 25: 235-8. PMID 10835645 DOI: 10.1038/76118 |
0.501 |
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| 1996 |
Wincker P, Ravel C, Blaineau C, Pages M, Jauffret Y, Dedet JP, Bastien P. The Leishmania genome comprises 36 chromosomes conserved across widely divergent human pathogenic species. Nucleic Acids Research. 24: 1688-94. PMID 8649987 DOI: 10.1093/NAR/24.9.1688 |
0.348 |
|
| 1990 |
Wincker P, Roizes G, Goldenberg S. Characterization of a Trypanosoma cruzi specific nuclear repeated sequence. Molecular and Biochemical Parasitology. 41: 147-52. PMID 2200962 DOI: 10.1016/0166-6851(90)90105-U |
0.397 |
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