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Erik Holmstrom - Publications

Affiliations: 
University of Kansas, Lawrence, KS, United States 
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22 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Akhter S, Tang Z, Wang J, Haboro M, Holmstrom ED, Wang J, Miao Y. Mechanism of Ligand Binding to Theophylline RNA Aptamer. Journal of Chemical Information and Modeling. PMID 38226603 DOI: 10.1021/acs.jcim.3c01454  0.302
2023 Nepal S, Holmstrom ED. Single-molecule-binding studies of antivirals targeting the hepatitis C virus core protein. Journal of Virology. e0089223. PMID 37772835 DOI: 10.1128/jvi.00892-23  0.382
2021 Gunawardhana SM, Holmstrom ED. Apolar chemical environments compact unfolded RNAs and can promote folding. Biophysical Reports. 1. PMID 35382036 DOI: 10.1016/j.bpr.2021.100004  0.335
2021 Tang Z, Akhter S, Ramprasad A, Wang X, Reibarkh M, Wang J, Aryal S, Thota SS, Zhao J, Douglas JT, Gao P, Holmstrom ED, Miao Y, Wang J. Recognition of single-stranded nucleic acids by small-molecule splicing modulators. Nucleic Acids Research. PMID 34283224 DOI: 10.1093/nar/gkab602  0.327
2021 Sanders JC, Holmstrom ED. Integrating single-molecule FRET and biomolecular simulations to study diverse interactions between nucleic acids and proteins. Essays in Biochemistry. PMID 33600559 DOI: 10.1042/EBC20200022  0.425
2020 Sharma R, Kk S, Holmstrom ED, Westerlund F. Real-time compaction of nanoconfined DNA by an intrinsically disordered macromolecular counterion. Biochemical and Biophysical Research Communications. PMID 32951838 DOI: 10.1016/j.bbrc.2020.06.051  0.36
2020 Schuler B, Borgia A, Borgia MB, Heidarsson PO, Holmstrom ED, Nettels D, Sottini A. Binding without folding - the biomolecular function of disordered polyelectrolyte complexes. Current Opinion in Structural Biology. 60: 66-76. PMID 31874413 DOI: 10.1016/J.Sbi.2019.12.006  0.573
2020 Nueesch MF, Holmstrom ED, Nettels D, Schuler B. Conformational Ensembles and Dynamics of Single-Stranded Nucleic Acids using High-Resolution Single-Molecule Fluorescence Spectroscopy Biophysical Journal. 118. DOI: 10.1016/J.Bpj.2019.11.1865  0.548
2019 Holmstrom ED, Liu Z, Nettels D, Best RB, Schuler B. Disordered RNA chaperones can enhance nucleic acid folding via local charge screening. Nature Communications. 10: 2453. PMID 31165735 DOI: 10.1038/S41467-019-10356-0  0.653
2019 Holmstrom ED, Liu Z, Nettels D, Best RB, Schuler B. Disordered RNA Chaperones Enhance Nucleic Acid Folding via Local Charge Screening Biophysical Journal. 116. DOI: 10.1016/J.Bpj.2018.11.2528  0.592
2018 Holmstrom ED, Holla A, Zheng W, Nettels D, Best RB, Schuler B. Accurate Transfer Efficiencies, Distance Distributions, and Ensembles of Unfolded and Intrinsically Disordered Proteins From Single-Molecule FRET. Methods in Enzymology. 611: 287-325. PMID 30471690 DOI: 10.1016/Bs.Mie.2018.09.030  0.563
2018 Sturzenegger F, Zosel F, Holmstrom ED, Buholzer KJ, Makarov DE, Nettels D, Schuler B. Transition path times of coupled folding and binding reveal the formation of an encounter complex. Nature Communications. 9: 4708. PMID 30413694 DOI: 10.1038/S41467-018-07043-X  0.569
2018 Grotz K, Nüesch M, Holmstrom E, Heinz M, Stelzl LS, Schuler B, Hummer G. Dispersion Correction Alleviates Dye Stacking of Single-Stranded DNA and RNA in Simulations of Single-Molecule Fluorescence Experiments. The Journal of Physical Chemistry. B. PMID 30285443 DOI: 10.1021/Acs.Jpcb.8B07537  0.557
2018 Dupuis NF, Holmstrom ED, Nesbitt DJ. Tests of Kramers' Theory at the Single-Molecule Level: Evidence for Folding of an Isolated RNA Tertiary Interaction at the Viscous Speed Limit. The Journal of Physical Chemistry. B. PMID 30078323 DOI: 10.1021/Acs.Jpcb.8B04014  0.316
2018 Liu Y, Holmstrom E, Yu P, Tan K, Zuo X, Nesbitt DJ, Sousa R, Stagno JR, Wang YX. Incorporation of isotopic, fluorescent, and heavy-atom-modified nucleotides into RNAs by position-selective labeling of RNA. Nature Protocols. 13: 987-1005. PMID 29651055 DOI: 10.1038/Nprot.2018.002  0.362
2018 Holmstrom ED, Nettels D, Schuler B. Conformational Plasticity of Hepatitis C Virus Core Protein Enables RNA-Induced Formation of Nucleocapsid-like Particles. Journal of Molecular Biology. 430: 2453-2467. PMID 29045818 DOI: 10.1016/J.Jmb.2017.10.010  0.593
2015 Holmstrom ED, Dupuis NF, Nesbitt DJ. Kinetic and thermodynamic origins of osmolyte-influenced nucleic acid folding. The Journal of Physical Chemistry. B. 119: 3687-96. PMID 25621404 DOI: 10.1021/Jp512491N  0.351
2014 Holmstrom ED, Polaski JT, Batey RT, Nesbitt DJ. Single-molecule conformational dynamics of a biologically functional hydroxocobalamin riboswitch. Journal of the American Chemical Society. 136: 16832-43. PMID 25325398 DOI: 10.1021/Ja5076184  0.341
2014 Dupuis NF, Holmstrom ED, Nesbitt DJ. Molecular-crowding effects on single-molecule RNA folding/unfolding thermodynamics and kinetics Proceedings of the National Academy of Sciences of the United States of America. 111: 8464-8469. PMID 24850865 DOI: 10.1073/Pnas.1316039111  0.358
2014 Holmstrom E, Nesbitt D. Folding in Human Telomerase RNA Pseudoknots: Kinetic and Thermodynamic Studies via Single-Molecule FRET Biophysical Journal. 106: 284a-285a. DOI: 10.1016/J.Bpj.2013.11.1664  0.307
2012 Fiore JL, Holmstrom ED, Fiegland LR, Hodak JH, Nesbitt DJ. The role of counterion valence and size in GAAA tetraloop-receptor docking/undocking kinetics Journal of Molecular Biology. 423: 198-216. PMID 22796627 DOI: 10.1016/J.Jmb.2012.07.006  0.323
2012 Holmstrom ED, Fiore JL, Nesbitt DJ. Thermodynamic origins of monovalent facilitated RNA folding Biochemistry. 51: 3732-3743. PMID 22448852 DOI: 10.1021/Bi201420A  0.305
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