Year |
Citation |
Score |
2023 |
Wang Z, Wang YW, Kasuga T, Lopez-Giraldez F, Zhang Y, Zhang Z, Wang Y, Dong C, Sil A, Trail F, Yarden O, Townsend JP. Lineage-specific genes are clustered with HET-domain genes and respond to environmental and genetic manipulations regulating reproduction in Neurospora. Plos Genetics. 19: e1011019. PMID 37934795 DOI: 10.1371/journal.pgen.1011019 |
0.552 |
|
2023 |
Gao X, Chen K, Xiong J, Zou D, Yang F, Ma Y, Jiang C, Gao X, Wang G, Gu S, Zhang P, Luo S, Huang K, Bao Y, Zhang Z, et al. The P10K database: a data portal for the protist 10 000 genomes project. Nucleic Acids Research. PMID 37930867 DOI: 10.1093/nar/gkad992 |
0.439 |
|
2023 |
Li L, Xu B, Tian D, Wang A, Zhu J, Li C, Li N, Zhao W, Shi L, Xue Y, Zhang Z, Bao Y, Zhao W, Song S. McAN: a novel computational algorithm and platform for constructing and visualizing haplotype networks. Briefings in Bioinformatics. PMID 37170752 DOI: 10.1093/bib/bbad174 |
0.335 |
|
2023 |
Ma L, Zhang Z. The contribution of databases towards understanding the universe of long non-coding RNAs. Nature Reviews. Molecular Cell Biology. PMID 37147495 DOI: 10.1038/s41580-023-00612-z |
0.31 |
|
2022 |
Ma L, Zou D, Liu L, Shireen H, Abbasi AA, Bateman A, Xiao J, Zhao W, Bao Y, Zhang Z. Database Commons: A Catalog of Worldwide Biological Databases. Genomics, Proteomics & Bioinformatics. PMID 36572336 DOI: 10.1016/j.gpb.2022.12.004 |
0.351 |
|
2022 |
Li Z, Liu L, Feng C, Qin Y, Xiao J, Zhang Z, Ma L. LncBook 2.0: integrating human long non-coding RNAs with multi-omics annotations. Nucleic Acids Research. PMID 36330950 DOI: 10.1093/nar/gkac999 |
0.403 |
|
2022 |
Duan G, Wu G, Chen X, Tian D, Li Z, Sun Y, Du Z, Hao L, Song S, Gao Y, Xiao J, Zhang Z, Bao Y, Tang B, Zhao W. HGD: an integrated homologous gene database across multiple species. Nucleic Acids Research. PMID 36318261 DOI: 10.1093/nar/gkac970 |
0.401 |
|
2022 |
Zhang M, Zong W, Zou D, Wang G, Zhao W, Yang F, Wu S, Zhang X, Guo X, Ma Y, Xiong Z, Zhang Z, Bao Y, Li R. MethBank 4.0: an updated database of DNA methylation across a variety of species. Nucleic Acids Research. PMID 36318250 DOI: 10.1093/nar/gkac969 |
0.382 |
|
2022 |
Liu X, Tian D, Li C, Tang B, Wang Z, Zhang R, Pan Y, Wang Y, Zou D, Zhang Z, Song S. GWAS Atlas: an updated knowledgebase integrating more curated associations in plants and animals. Nucleic Acids Research. PMID 36263826 DOI: 10.1093/nar/gkac924 |
0.362 |
|
2022 |
Hua Z, Tian D, Jiang C, Song S, Chen Z, Zhao Y, Jin Y, Huang L, Zhang Z, Yuan Y. Towards comprehensive integration and curation of chloroplast genomes. Plant Biotechnology Journal. PMID 36069606 DOI: 10.1111/pbi.13923 |
0.359 |
|
2022 |
Zhang Z. KaKs_calculator 3.0: Calculating selective pressure on coding and non-coding sequences. Genomics, Proteomics & Bioinformatics. PMID 34990803 DOI: 10.1016/j.gpb.2021.12.002 |
0.35 |
|
2021 |
Liu L, Li Z, Liu C, Zou D, Li Q, Feng C, Jing W, Luo S, Zhang Z, Ma L. LncRNAWiki 2.0: a knowledgebase of human long non-coding RNAs with enhanced curation model and database system. Nucleic Acids Research. PMID 34751395 DOI: 10.1093/nar/gkab998 |
0.381 |
|
2021 |
Xiong Z, Yang F, Li M, Ma Y, Zhao W, Wang G, Li Z, Zheng X, Zou D, Zong W, Kang H, Jia Y, Li R, Zhang Z, Bao Y. EWAS Open Platform: integrated data, knowledge and toolkit for epigenome-wide association study. Nucleic Acids Research. PMID 34718752 DOI: 10.1093/nar/gkab972 |
0.346 |
|
2021 |
Jiang S, Du Q, Feng C, Ma L, Zhang Z. CompoDynamics: a comprehensive database for characterizing sequence composition dynamics. Nucleic Acids Research. PMID 34718745 DOI: 10.1093/nar/gkab979 |
0.441 |
|
2021 |
Zhang SS, Chen X, Chen TT, Zhu JW, Tang BX, Wang AK, Dong LL, Zhang ZW, Sun YL, Yu CX, Zhai S, Sun YB, Chen HX, Du ZL, Xiao JF, ... Zhang Z, et al. GSA-Human: Genome Sequence Archive for Human. Yi Chuan = Hereditas. 43: 988-993. PMID 34702711 DOI: 10.16288/j.yczz.21-248 |
0.367 |
|
2021 |
Jia L, Li Y, Huang F, Jiang Y, Li H, Wang Z, Chen T, Li J, Zhang Z, Yao W. LIRBase: a comprehensive database of long inverted repeats in eukaryotic genomes. Nucleic Acids Research. PMID 34643715 DOI: 10.1093/nar/gkab912 |
0.44 |
|
2021 |
Zhang Y, Zou D, Zhu T, Xu T, Chen M, Niu G, Zong W, Pan R, Jing W, Sang J, Liu C, Xiong Y, Sun Y, Zhai S, Chen H, ... ... Zhang Z, et al. Gene Expression Nebulas (GEN): a comprehensive data portal integrating transcriptomic profiles across multiple species at both bulk and single-cell levels. Nucleic Acids Research. PMID 34591957 DOI: 10.1093/nar/gkab878 |
0.419 |
|
2021 |
Chen T, Chen X, Zhang S, Zhu J, Tang B, Wang A, Dong L, Zhang Z, Yu C, Sun Y, Chi L, Chen H, Zhai S, Sun Y, Lan L, ... ... Zhang Z, et al. The Genome Sequence Archive Family: Toward Explosive Data Growth and Diverse Data Types. Genomics, Proteomics & Bioinformatics. PMID 34400360 DOI: 10.1016/j.gpb.2021.08.001 |
0.378 |
|
2021 |
Chen M, Ma Y, Wu S, Zheng X, Kang H, Sang J, Xu X, Hao L, Li Z, Gong Z, Xiao Writing J, Zhang Z, Zhao W, Bao Y. Genome Warehouse: A Public Repository Housing Genome-scale Data. Genomics, Proteomics & Bioinformatics. PMID 34175476 DOI: 10.1016/j.gpb.2021.04.001 |
0.408 |
|
2021 |
Teng X, Li Q, Li Z, Zhang Y, Niu G, Xiao J, Yu J, Zhang Z, Song S. Compositional Variability and Mutation Spectra of Monophyletic SARS-CoV-2 Clades. Genomics, Proteomics & Bioinformatics. PMID 33581339 DOI: 10.1016/j.gpb.2020.10.003 |
0.416 |
|
2020 |
Miao W, Song L, Ba S, Zhang L, Guan G, Zhang Z, Ning K. Protist 10,000 Genomes Project. Innovation (New York, N.Y.). 1: 100058. PMID 34557722 DOI: 10.1016/j.xinn.2020.100058 |
0.314 |
|
2020 |
Song S, Ma L, Zou D, Tian D, Li C, Zhu J, Chen M, Wang A, Ma Y, Li M, Teng X, Cui Y, Duan G, Zhang M, Jin T, ... ... Zhang Z, et al. The Global Landscape of SARS-CoV-2 Genomes, Variants, and Haplotypes in 2019nCoVR. Genomics, Proteomics & Bioinformatics. PMID 33704069 DOI: 10.1016/j.gpb.2020.09.001 |
0.414 |
|
2020 |
Li C, Tian D, Tang B, Liu X, Teng X, Zhao W, Zhang Z, Song S. Genome Variation Map: a worldwide collection of genome variations across multiple species. Nucleic Acids Research. PMID 33170268 DOI: 10.1093/nar/gkaa1005 |
0.412 |
|
2020 |
Gong Z, Zhu J, Li C, Jiang S, Ma L, Tang B, Zou D, Chen M, Sun Y, Song S, Zhang Z, Xiao J, Xue Y, Bao Y, Du Z, et al. A coronavirus online analysis platform at the National Genomics Data Center. Zoological Research. 1-6. PMID 33045776 DOI: 10.24272/j.issn.2095-8137.2020.065 |
0.406 |
|
2020 |
Li Z, Liu L, Jiang S, Li Q, Feng C, Du Q, Zou D, Xiao J, Zhang Z, Ma L. LncExpDB: an expression database of human long non-coding RNAs. Nucleic Acids Research. PMID 33045751 DOI: 10.1093/nar/gkaa850 |
0.386 |
|
2020 |
Sun C, Huang J, Wang Y, Zhao X, Su L, Thomas GWC, Zhao M, Zhang X, Jungreis I, Kellis M, Vicario S, Sharakhov IV, Bondarenko SM, Hasselmann M, Kim CN, ... ... Zhang Z, et al. Genus-wide characterization of bumblebee genomes provides insights into their evolution and variation in ecological and behavioral traits. Molecular Biology and Evolution. PMID 32946576 DOI: 10.1093/Molbev/Msaa240 |
0.387 |
|
2020 |
Li Q, Li Z, Feng C, Jiang S, Zhang Z, Ma L. Multi-omics annotation of human long non-coding RNAs. Biochemical Society Transactions. PMID 32756901 DOI: 10.1042/BST20191063 |
0.41 |
|
2020 |
Sang J, Zou D, Wang Z, Wang F, Zhang Y, Xia L, Li Z, Ma L, Li M, Xu B, Liu X, Wu S, Liu L, Niu G, Li M, ... ... Zhang Z, et al. IC4R-2.0: Rice Genome Reannotation Using Massive RNA-seq Data. Genomics, Proteomics & Bioinformatics. PMID 32683045 DOI: 10.1016/J.Gpb.2018.12.011 |
0.536 |
|
2020 |
Yan J, Zou D, Li C, Zhang Z, Song S, Wang X. SR4R: An Integrative SNP Resource for Genomic Breeding and Population Research in Rice. Genomics, Proteomics & Bioinformatics. PMID 32619768 DOI: 10.1016/J.Gpb.2020.03.002 |
0.437 |
|
2020 |
Liu L, Wang G, Wang L, Yu C, Li M, Song S, Hao L, Ma L, Zhang Z. Computational identification and characterization of glioma candidate biomarkers through multi-omics integrative profiling. Biology Direct. 15: 10. PMID 32539851 DOI: 10.1186/S13062-020-00264-5 |
0.394 |
|
2020 |
Zhang Z, Song S, Yu J, Zhao W, Xiao J, Bao Y. The Elements of Data Sharing. Genomics, Proteomics & Bioinformatics. PMID 32360769 DOI: 10.1016/J.Gpb.2020.04.001 |
0.428 |
|
2020 |
Zhao WM, Song SH, Chen ML, Zou D, Ma LN, Ma YK, Li RJ, Hao LL, Li CP, Tian DM, Tang BX, Wang YQ, Zhu JW, Chen HX, Zhang Z, et al. The 2019 novel coronavirus resource. Yi Chuan = Hereditas. 42: 212-221. PMID 32102777 DOI: 10.16288/j.yczz.20-030 |
0.397 |
|
2019 |
Li Z, Zhang Y, Zou D, Zhao Y, Wang HL, Zhang Y, Xia X, Luo J, Guo H, Zhang Z. LSD 3.0: a comprehensive resource for the leaf senescence research community. Nucleic Acids Research. PMID 31599330 DOI: 10.1093/Nar/Gkz898 |
0.5 |
|
2019 |
Xiong Z, Li M, Yang F, Ma Y, Sang J, Li R, Li Z, Zhang Z, Bao Y. EWAS Data Hub: a resource of DNA methylation array data and metadata. Nucleic Acids Research. PMID 31584095 DOI: 10.1093/Nar/Gkz840 |
0.398 |
|
2019 |
Tian D, Wang P, Tang B, Teng X, Li C, Liu X, Zou D, Song S, Zhang Z. GWAS Atlas: a curated resource of genome-wide variant-trait associations in plants and animals. Nucleic Acids Research. PMID 31566222 DOI: 10.1093/Nar/Gkz828 |
0.442 |
|
2019 |
Ma L, Cao J, Liu L, Li Z, Shireen H, Pervaiz N, Batool F, Raza RZ, Zou D, Bao Y, Abbasi AA, Zhang Z. Community Curation and Expert Curation of Human Long Noncoding RNAs with LncRNAWiki and LncBook. Current Protocols in Bioinformatics. 67: e82. PMID 31524988 DOI: 10.1002/Cpbi.82 |
0.492 |
|
2019 |
Pervaiz N, Shakeel N, Qasim A, Zehra R, Anwar S, Rana N, Xue Y, Zhang Z, Bao Y, Abbasi AA. Evolutionary history of the human multigene families reveals widespread gene duplications throughout the history of animals. Bmc Evolutionary Biology. 19: 128. PMID 31221090 DOI: 10.1186/S12862-019-1441-0 |
0.457 |
|
2019 |
Song S, Tian D, Zhang Z, Hu S, Yu J. Rice Genomics: Over the Past Two Decades and Into the Future. Genomics, Proteomics & Bioinformatics. PMID 30771506 DOI: 10.1016/J.Gpb.2019.01.001 |
0.52 |
|
2019 |
Song S, Zhang Z. Database Resources in BIG Data Center: Submission, Archive and Integration of Big Data in Plant Science. Molecular Plant. PMID 30716410 DOI: 10.1016/J.Molp.2019.01.020 |
0.39 |
|
2019 |
Ma L, Cao J, Liu L, Du Q, Li Z, Zou D, Bajic VB, Zhang Z. LncBook: a curated knowledgebase of human long non-coding RNAs. Nucleic Acids Research. PMID 30715521 DOI: 10.1093/Nar/Gkz073 |
0.622 |
|
2019 |
Wang G, Yin H, Li B, Yu C, Wang F, Xu X, Cao J, Bao Y, Wang L, Abbasi AA, Bajic VB, Ma L, Zhang Z. Characterization and identification of long non-coding RNAs based on feature relationship. Bioinformatics (Oxford, England). PMID 30649200 DOI: 10.1093/Bioinformatics/Btz008 |
0.606 |
|
2019 |
Sweeney BA, Petrov AI, Burkov B, Finn RD, Bateman A, Szymanski M, Karlowski WM, Gorodkin J, Seemann SE, Cannone JJ, Gutell RR, Fey P, Basu S, Kay S, Cochrane G, ... ... Zhang Z, et al. RNAcentral: a hub of information for non-coding RNA sequences Nucleic Acids Research. 47. PMID 30395267 DOI: 10.1093/Nar/Gky1034 |
0.512 |
|
2018 |
Zhang YS, Xia L, Sang J, Li M, Liu L, Li MW, Niu GY, Cao JB, Teng XF, Zhou Q, Zhang Z. [The BIG Data Center's database resources]. Yi Chuan = Hereditas. 40: 1039-1043. PMID 30465537 DOI: 10.16288/j.yczz.18-190 |
0.393 |
|
2018 |
Tang B, Zhou Q, Dong L, Li W, Zhang X, Lan L, Zhai S, Xiao J, Zhang Z, Bao Y, Zhang YP, Wang GD, Zhao W. iDog: an integrated resource for domestic dogs and wild canids. Nucleic Acids Research. PMID 30371881 DOI: 10.1093/Nar/Gky1041 |
0.535 |
|
2018 |
Li M, Zou D, Li Z, Gao R, Sang J, Zhang Y, Li R, Xia L, Zhang T, Niu G, Bao Y, Zhang Z. EWAS Atlas: a curated knowledgebase of epigenome-wide association studies. Nucleic Acids Research. PMID 30364969 DOI: 10.1093/Nar/Gky1027 |
0.434 |
|
2018 |
Li M, Xia L, Zhang Y, Niu G, Li M, Wang P, Zhang Y, Sang J, Zou D, Hu S, Hao L, Zhang Z. Plant editosome database: a curated database of RNA editosome in plants. Nucleic Acids Research. PMID 30364952 DOI: 10.1093/Nar/Gky1026 |
0.421 |
|
2018 |
Niu G, Zou D, Li M, Zhang Y, Sang J, Xia L, Li M, Liu L, Cao J, Zhang Y, Wang P, Hu S, Hao L, Zhang Z. Editome Disease Knowledgebase (EDK): a curated knowledgebase of editome-disease associations in human. Nucleic Acids Research. PMID 30357418 DOI: 10.1093/Nar/Gky958 |
0.415 |
|
2018 |
Zhao Y, Wang J, Liang F, Liu Y, Wang Q, Zhang H, Jiang M, Zhang Z, Zhao W, Bao Y, Zhang Z, Wu J, Asmann YW, Li R, Xiao J. NucMap: a database of genome-wide nucleosome positioning map across species. Nucleic Acids Research. PMID 30335176 DOI: 10.1093/Nar/Gky980 |
0.447 |
|
2018 |
Ma L, Cao J, Liu L, Du Q, Li Z, Zou D, Bajic VB, Zhang Z. LncBook: a curated knowledgebase of human long non-coding RNAs. Nucleic Acids Research. PMID 30329098 DOI: 10.1093/nar/gky960 |
0.584 |
|
2018 |
Zhang Z, Xue Y, Zhao F. Bioinformatics Commons: The Cornerstone of Life and Health Sciences. Genomics, Proteomics & Bioinformatics. PMID 30268933 DOI: 10.1016/J.Gpb.2018.09.001 |
0.309 |
|
2018 |
Yin H, Li M, Xia L, He C, Zhang Z. Computational determination of gene age and characterization of evolutionary dynamics in human. Briefings in Bioinformatics. PMID 30184145 DOI: 10.1093/Bib/Bby074 |
0.444 |
|
2018 |
Xu X, Hao L, Zhu J, Tang B, Zhou Q, Song F, Chen T, Zhang S, Dong L, Lan L, Wang Y, Sang J, Liang F, Cao J, Liu F, ... ... Zhang Z, ... ... Zhang Z, et al. Database Resources of the BIG Data Center in 2018 Nucleic Acids Research. 46. PMID 29036542 DOI: 10.1093/Nar/Gkx897 |
0.511 |
|
2017 |
Li R, Liang F, Li M, Zou D, Sun S, Zhao Y, Zhao W, Bao Y, Xiao J, Zhang Z. MethBank 3.0: a database of DNA methylomes across a variety of species. Nucleic Acids Research. PMID 29161430 DOI: 10.1093/Nar/Gkx1139 |
0.404 |
|
2017 |
Song S, Tian D, Li C, Tang B, Dong L, Xiao J, Bao Y, Zhao W, He H, Zhang Z. Genome Variation Map: a data repository of genome variations in BIG Data Center. Nucleic Acids Research. PMID 29069473 DOI: 10.1093/Nar/Gkx986 |
0.505 |
|
2017 |
Sang J, Wang Z, Li M, Cao J, Niu G, Xia L, Zou D, Wang F, Xu X, Han X, Fan J, Yang Y, Zuo W, Zhang Y, Zhao W, ... ... Zhang Z, et al. ICG: a wiki-driven knowledgebase of internal control genes for RT-qPCR normalization. Nucleic Acids Research. PMID 29036693 DOI: 10.1093/Nar/Gkx875 |
0.446 |
|
2017 |
Zhao ZM, Campbell MC, Li N, Lee DSW, Zhang Z, Townsend JP. Detection of regional variation in selection intensity within protein-coding genes using DNA sequence polymorphism and divergence. Molecular Biology and Evolution. PMID 28962009 DOI: 10.1093/Molbev/Msx213 |
0.619 |
|
2017 |
Xia L, Zou D, Sang J, Xu X, Yin H, Li M, Wu S, Hu S, Hao L, Zhang Z. Rice Expression Database (RED): An integrated RNA-Seq-derived gene expression database for rice. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 28529082 DOI: 10.1016/J.Jgg.2017.05.003 |
0.482 |
|
2017 |
Salhi A, Essack M, Alam T, Bajic VP, Ma L, Radovanovic A, Marchand B, Schmeier S, Zhang Z, Bajic VB. DES-ncRNA: A knowledgebase for exploring information about human micro and long noncoding RNAs based on literature-mining. Rna Biology. 0. PMID 28387604 DOI: 10.1080/15476286.2017.1312243 |
0.584 |
|
2017 |
Wang Y, Song F, Zhu J, Zhang S, Yang Y, Chen T, Tang B, Dong L, Ding N, Zhang Q, Bai Z, Dong X, Chen H, Sun M, Zhai S, ... ... Zhang Z, et al. GSA: Genome Sequence Archive(). Genomics, Proteomics & Bioinformatics. 15: 14-18. PMID 28387199 DOI: 10.1016/J.Gpb.2017.01.001 |
0.471 |
|
2017 |
Xu X, Ji Z, Zhang Z. CloudPhylo: a fast and scalable tool for phylogeny reconstruction. Bioinformatics (Oxford, England). 33: 438-440. PMID 28172557 DOI: 10.1093/Bioinformatics/Btw645 |
0.419 |
|
2017 |
Petrov AI, Kay SJE, Kalvari I, Howe KL, Gray KA, Bruford EA, Kersey PJ, Cochrane G, Finn RD, Bateman A, Kozomara A, Griffiths-Jones S, Frankish A, Zwieb CW, ... ... Zhang Z, et al. RNAcentral: a comprehensive database of non-coding RNA sequences. Nucleic Acids Research. 45: D128-D134. PMID 27794554 DOI: 10.1093/Nar/Gkw1008 |
0.497 |
|
2017 |
Hao L, Xia L, Sheng X, Li M, Niu G, Zhang Z. Gene Expression Nebulas: a data portal of RNA-Seq based gene expression profiles F1000research. 6. DOI: 10.7490/F1000Research.1113780.1 |
0.441 |
|
2016 |
Xue Y, Lameijer EW, Ye K, Zhang K, Chang S, Wang X, Wu J, Gao G, Zhao F, Li J, Han C, Xu S, Xiao J, Yang X, Ying X, ... ... Zhang Z, et al. Precision Medicine: What Challenges Are We Facing? Genomics, Proteomics & Bioinformatics. PMID 27744061 DOI: 10.1016/J.Gpb.2016.10.001 |
0.395 |
|
2016 |
Yin H, Wang G, Ma L, Yi SV, Zhang Z. What signatures dominantly associate with gene age? Genome Biology and Evolution. PMID 27609935 DOI: 10.1093/Gbe/Evw216 |
0.428 |
|
2016 |
Sun S, Xiao J, Zhang H, Zhang Z. Pangenome Evidence for Higher Codon Usage Bias and Stronger Translational Selection in Core Genes of Escherichia coli. Frontiers in Microbiology. 7: 1180. PMID 27536275 DOI: 10.3389/Fmicb.2016.01180 |
0.453 |
|
2016 |
Tian X, Zhang Z, Yang T, Chen M, Li J, Chen F, Yang J, Li W, Zhang B, Zhang Z, Wu J, Zhang C, Long L, Xiao J. Comparative Genomics Analysis of Streptomyces Species Reveals Their Adaptation to the Marine Environment and Their Diversity at the Genomic Level. Frontiers in Microbiology. 7: 998. PMID 27446038 DOI: 10.3389/Fmicb.2016.00998 |
0.455 |
|
2016 |
Yin H, Ma L, Wang G, Li M, Zhang Z. Old genes experience stronger translational selection than young genes. Gene. PMID 27259662 DOI: 10.1016/J.Gene.2016.05.041 |
0.422 |
|
2016 |
Wang G, Sun S, Zhang Z. Randomness in Sequence Evolution Increases over Time. Plos One. 11: e0155935. PMID 27224236 DOI: 10.1371/Journal.Pone.0155935 |
0.438 |
|
2016 |
Hao L, Zhang H, Zhang Z, Hu S, Xue Y. Information Commons for Rice (IC4R). Nucleic Acids Research. 44: D1172-80. PMID 26519466 DOI: 10.1093/Nar/Gkv1141 |
0.514 |
|
2015 |
Zou D, Ma L, Yu J, Zhang Z. Biological databases for human research. Genomics, Proteomics & Bioinformatics. 13: 55-63. PMID 25712261 DOI: 10.1016/J.Gpb.2015.01.006 |
0.519 |
|
2015 |
Kang Y, Gu C, Yuan L, Wang Y, Zhu Y, Li X, Luo Q, Xiao J, Jiang D, Qian M, Khan AA, Chen F, Zhang Z, Yu J. Erratum for kang et Al., flexibility and symmetry of prokaryotic genome rearrangement reveal lineage-associated core-gene-defined genome organizational frameworks. Mbio. 6. PMID 25587015 DOI: 10.1128/Mbio.02395-14 |
0.444 |
|
2015 |
Bai B, Zhao WM, Tang BX, Wang YQ, Wang L, Zhang Z, Yang HC, Liu YH, Zhu JW, Irwin DM, Wang GD, Zhang YP. DoGSD: the dog and wolf genome SNP database. Nucleic Acids Research. 43: D777-83. PMID 25404132 DOI: 10.1093/Nar/Gku1174 |
0.459 |
|
2015 |
Ma L, Li A, Zou D, Xu X, Xia L, Yu J, Bajic VB, Zhang Z. LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs. Nucleic Acids Research. 43: D187-92. PMID 25399417 DOI: 10.1093/Nar/Gku1167 |
0.637 |
|
2015 |
Zou D, Sun S, Li R, Liu J, Zhang J, Zhang Z. MethBank: a database integrating next-generation sequencing single-base-resolution DNA methylation programming data. Nucleic Acids Research. 43: D54-8. PMID 25294826 DOI: 10.1093/Nar/Gku920 |
0.439 |
|
2014 |
Kang Y, Gu C, Yuan L, Wang Y, Zhu Y, Li X, Luo Q, Xiao J, Jiang D, Qian M, Ahmed Khan A, Chen F, Zhang Z, Yu J. Flexibility and symmetry of prokaryotic genome rearrangement reveal lineage-associated core-gene-defined genome organizational frameworks. Mbio. 5: e01867. PMID 25425232 DOI: 10.1128/Mbio.01867-14 |
0.556 |
|
2014 |
Xu P, Zhang X, Wang X, Li J, Liu G, Kuang Y, Xu J, Zheng X, Ren L, Wang G, Zhang Y, Huo L, Zhao Z, Cao D, Lu C, ... ... Zhang Z, et al. Genome sequence and genetic diversity of the common carp, Cyprinus carpio. Nature Genetics. 46: 1212-9. PMID 25240282 DOI: 10.1038/Ng.3098 |
0.535 |
|
2014 |
Wu G, Zhu J, Yu J, Zhou L, Huang JZ, Zhang Z. Evaluation of five methods for genome-wide circadian gene identification. Journal of Biological Rhythms. 29: 231-42. PMID 25238853 DOI: 10.1177/0748730414537788 |
0.485 |
|
2014 |
Zhang Z, Zhu W, Luo J. Bringing biocuration to China. Genomics, Proteomics & Bioinformatics. 12: 153-5. PMID 25042682 DOI: 10.1016/J.Gpb.2014.07.001 |
0.419 |
|
2014 |
Ma L, Cui P, Zhu J, Zhang Z, Zhang Z. Translational selection in human: more pronounced in housekeeping genes. Biology Direct. 9: 17. PMID 25011537 DOI: 10.1186/1745-6150-9-17 |
0.419 |
|
2014 |
Wu J, Xiao J, Zhang Z, Wang X, Hu S, Yu J. Ribogenomics: the science and knowledge of RNA. Genomics, Proteomics & Bioinformatics. 12: 57-63. PMID 24769101 DOI: 10.1016/J.Gpb.2014.04.002 |
0.488 |
|
2014 |
Wu H, Fang Y, Yu J, Zhang Z. The quest for a unified view of bacterial land colonization. The Isme Journal. 8: 1358-69. PMID 24451209 DOI: 10.1038/Ismej.2013.247 |
0.528 |
|
2014 |
Zhao Y, Jia X, Yang J, Ling Y, Zhang Z, Yu J, Wu J, Xiao J. PanGP: a tool for quickly analyzing bacterial pan-genome profile. Bioinformatics (Oxford, England). 30: 1297-9. PMID 24420766 DOI: 10.1093/Bioinformatics/Btu017 |
0.501 |
|
2014 |
Zhang Z, Sang J, Ma L, Wu G, Wu H, Huang D, Zou D, Liu S, Li A, Hao L, Tian M, Xu C, Wang X, Wu J, Xiao J, et al. RiceWiki: a wiki-based database for community curation of rice genes. Nucleic Acids Research. 42: D1222-8. PMID 24136999 DOI: 10.1093/Nar/Gkt926 |
0.51 |
|
2013 |
Wu J, Xiao J, Wang L, Zhong J, Yin H, Wu S, Zhang Z, Yu J. Systematic analysis of intron size and abundance parameters in diverse lineages. Science China. Life Sciences. 56: 968-74. PMID 24022126 DOI: 10.1007/S11427-013-4540-Y |
0.522 |
|
2013 |
Dai L, Tian M, Wu J, Xiao J, Wang X, Townsend JP, Zhang Z. AuthorReward: increasing community curation in biological knowledge wikis through automated authorship quantification. Bioinformatics (Oxford, England). 29: 1837-9. PMID 23732274 DOI: 10.1093/Bioinformatics/Btt284 |
0.551 |
|
2013 |
Ma L, Bajic VB, Zhang Z. On the classification of long non-coding RNAs. Rna Biology. 10: 925-33. PMID 23696037 DOI: 10.4161/Rna.24604 |
0.607 |
|
2013 |
Tong X, Yang Y, Wang W, Bai Z, Ma L, Zheng X, Sun H, Zhang Z, Zhao M, Yu J, Ge RL. Expression profiling of abundant genes in pulmonary and cardiac muscle tissues of Tibetan Antelope (Pantholops hodgsonii). Gene. 523: 187-91. PMID 23612247 DOI: 10.1016/J.Gene.2013.03.011 |
0.499 |
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2013 |
Dai L, Xu C, Tian M, Sang J, Zou D, Li A, Liu G, Chen F, Wu J, Xiao J, Wang X, Yu J, Zhang Z. Community intelligence in knowledge curation: an application to managing scientific nomenclature. Plos One. 8: e56961. PMID 23451119 DOI: 10.1371/Journal.Pone.0056961 |
0.439 |
|
2013 |
Zhang Z, Yu J. Does the genetic code have a eukaryotic origin? Genomics, Proteomics & Bioinformatics. 11: 41-55. PMID 23402863 DOI: 10.1016/J.Gpb.2013.01.001 |
0.511 |
|
2013 |
Chen M, Xiao J, Zhang Z, Liu J, Wu J, Yu J. Identification of human HK genes and gene expression regulation study in cancer from transcriptomics data analysis. Plos One. 8: e54082. PMID 23382867 DOI: 10.1371/Journal.Pone.0054082 |
0.509 |
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2012 |
Dai L, Gao X, Guo Y, Xiao J, Zhang Z. Bioinformatics clouds for big data manipulation. Biology Direct. 7: 43; discussion 43. PMID 23190475 DOI: 10.1186/1745-6150-7-43 |
0.366 |
|
2012 |
Wu H, Qu H, Wan N, Zhang Z, Hu S, Yu J. Strand-biased gene distribution in bacteria is related to both horizontal gene transfer and strand-biased nucleotide composition. Genomics, Proteomics & Bioinformatics. 10: 186-96. PMID 23084774 DOI: 10.1016/J.Gpb.2012.08.001 |
0.534 |
|
2012 |
Zhang Z, Yu J. The pendulum model for genome compositional dynamics: from the four nucleotides to the twenty amino acids. Genomics, Proteomics & Bioinformatics. 10: 175-80. PMID 23084772 DOI: 10.1016/J.Gpb.2012.08.002 |
0.533 |
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2012 |
Cui P, Liu W, Zhao Y, Lin Q, Zhang D, Ding F, Xin C, Zhang Z, Song S, Sun F, Yu J, Hu S. Comparative analyses of H3K4 and H3K27 trimethylations between the mouse cerebrum and testis. Genomics, Proteomics & Bioinformatics. 10: 82-93. PMID 22768982 DOI: 10.1016/J.Gpb.2012.05.007 |
0.513 |
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2012 |
Cui P, Ding F, Lin Q, Zhang L, Li A, Zhang Z, Hu S, Yu J. Distinct contributions of replication and transcription to mutation rate variation of human genomes. Genomics, Proteomics & Bioinformatics. 10: 4-10. PMID 22449396 DOI: 10.1016/S1672-0229(11)60028-4 |
0.527 |
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2012 |
Zhang Z, Li J, Cui P, Ding F, Li A, Townsend JP, Yu J. Codon Deviation Coefficient: a novel measure for estimating codon usage bias and its statistical significance. Bmc Bioinformatics. 13: 43. PMID 22435713 DOI: 10.1186/1471-2105-13-43 |
0.658 |
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2012 |
Zhang Z, Xiao J, Wu J, Zhang H, Liu G, Wang X, Dai L. ParaAT: a parallel tool for constructing multiple protein-coding DNA alignments. Biochemical and Biophysical Research Communications. 419: 779-81. PMID 22390928 DOI: 10.1016/J.Bbrc.2012.02.101 |
0.419 |
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2012 |
Wu H, Zhang Z, Hu S, Yu J. On the molecular mechanism of GC content variation among eubacterial genomes. Biology Direct. 7: 2. PMID 22230424 DOI: 10.1186/1745-6150-7-2 |
0.539 |
|
2011 |
Zhang Z, Yu J. On the organizational dynamics of the genetic code. Genomics, Proteomics & Bioinformatics. 9: 21-9. PMID 21641559 DOI: 10.1016/S1672-0229(11)60004-1 |
0.48 |
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2010 |
Zhang Z, Yu J. Modeling compositional dynamics based on GC and purine contents of protein-coding sequences. Biology Direct. 5: 63. PMID 21059261 DOI: 10.1186/1745-6150-5-63 |
0.545 |
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2010 |
Qu H, Wu H, Zhang T, Zhang Z, Hu S, Yu J. Nucleotide compositional asymmetry between the leading and lagging strands of eubacterial genomes. Research in Microbiology. 161: 838-46. PMID 20868744 DOI: 10.1016/J.Resmic.2010.09.015 |
0.528 |
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2010 |
Zhang Z, López-Giráldez F, Townsend JP. LOX: inferring Level Of eXpression from diverse methods of census sequencing. Bioinformatics (Oxford, England). 26: 1918-9. PMID 20538728 DOI: 10.1093/Bioinformatics/Btq303 |
0.626 |
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2010 |
Wang D, Zhang Y, Zhang Z, Zhu J, Yu J. KaKs_Calculator 2.0: a toolkit incorporating gamma-series methods and sliding window strategies. Genomics, Proteomics & Bioinformatics. 8: 77-80. PMID 20451164 DOI: 10.1016/S1672-0229(10)60008-3 |
0.48 |
|
2010 |
Zhang Z, Townsend JP. The filamentous fungal gene expression database (FFGED). Fungal Genetics and Biology : Fg & B. 47: 199-204. PMID 20025988 DOI: 10.1016/J.Fgb.2009.12.001 |
0.612 |
|
2009 |
Zhang Z, Townsend JP. Maximum-likelihood model averaging to profile clustering of site types across discrete linear sequences. Plos Computational Biology. 5: e1000421. PMID 19557160 DOI: 10.1371/Journal.Pcbi.1000421 |
0.559 |
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2009 |
Li J, Zhang Z, Vang S, Yu J, Wong GK, Wang J. Correlation between Ka/Ks and Ks is related to substitution model and evolutionary lineage. Journal of Molecular Evolution. 68: 414-23. PMID 19308632 DOI: 10.1007/S00239-009-9222-9 |
0.427 |
|
2009 |
Zhang Z, Cheung KH, Townsend JP. Bringing Web 2.0 to bioinformatics. Briefings in Bioinformatics. 10: 1-10. PMID 18842678 DOI: 10.1093/Bib/Bbn041 |
0.594 |
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2007 |
Zheng H, Shi J, Fang X, Li Y, Vang S, Fan W, Wang J, Zhang Z, Wang W, Kristiansen K, Wang J. FGF: a web tool for Fishing Gene Family in a whole genome database. Nucleic Acids Research. 35: W121-5. PMID 17584790 DOI: 10.1093/Nar/Gkm426 |
0.478 |
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2007 |
Zhang Z, Li J, Zhao XQ, Wang J, Wong GK, Yu J. KaKs_Calculator: calculating Ka and Ks through model selection and model averaging. Genomics, Proteomics & Bioinformatics. 4: 259-63. PMID 17531802 DOI: 10.1016/S1672-0229(07)60007-2 |
0.468 |
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2007 |
Hu J, Zhao X, Zhang Z, Yu J. Compositional dynamics of guanine and cytosine content in prokaryotic genomes. Research in Microbiology. 158: 363-70. PMID 17449227 DOI: 10.1016/J.Resmic.2007.02.007 |
0.498 |
|
2007 |
Zhao X, Zhang Z, Yan J, Yu J. GC content variability of eubacteria is governed by the pol III alpha subunit. Biochemical and Biophysical Research Communications. 356: 20-5. PMID 17336933 DOI: 10.1016/J.Bbrc.2007.02.109 |
0.485 |
|
2007 |
Zhang Z, Yu J. Evaluation of six methods for estimating synonymous and nonsynonymous substitution rates. Genomics, Proteomics & Bioinformatics. 4: 173-81. PMID 17127215 DOI: 10.1016/S1672-0229(06)60030-2 |
0.483 |
|
2006 |
Zhang Z, Li J, Yu J. Computing Ka and Ks with a consideration of unequal transitional substitutions. Bmc Evolutionary Biology. 6: 44. PMID 16740169 DOI: 10.1186/1471-2148-6-44 |
0.474 |
|
2006 |
Li H, Coghlan A, Ruan J, Coin LJ, Hériché JK, Osmotherly L, Li R, Liu T, Zhang Z, Bolund L, Wong GK, Zheng W, Dehal P, Wang J, Durbin R. TreeFam: a curated database of phylogenetic trees of animal gene families. Nucleic Acids Research. 34: D572-80. PMID 16381935 DOI: 10.1093/Nar/Gkj118 |
0.442 |
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