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Scott Gifford - Publications

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21/39 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Speare L, Zhao L, Pavelsky MN, Jackson A, Smith S, Tyagi B, Sharpe GC, Woo M, Satkowiak L, Bolton T, Gifford SM, Septer AN. Flagella are required to coordinately activate competition and host colonization factors in response to a mechanical signal. Biorxiv : the Preprint Server For Biology. PMID 38260499 DOI: 10.1101/2023.12.31.573711  0.33
2023 Sharpe G, Zhao L, Meyer MG, Gong W, Burns SM, Tagliabue A, Buck KN, Santoro AE, Graff JR, Marchetti A, Gifford S. Synechococcus nitrogen gene loss in iron-limited ocean regions. Isme Communications. 3: 107. PMID 37783796 DOI: 10.1038/s43705-023-00314-9  0.331
2021 Damashek J, Okotie-Oyekan AO, Gifford SM, Vorobev A, Moran MA, Hollibaugh JT. Transcriptional activity differentiates families of Marine Group II Euryarchaeota in the coastal ocean. Isme Communications. 1: 5. PMID 37938231 DOI: 10.1038/s43705-021-00002-6  0.318
2021 Damashek J, Okotie-Oyekan AO, Gifford SM, Vorobev A, Moran MA, Hollibaugh JT. Transcriptional activity differentiates families of Marine Group II Euryarchaeota in the coastal ocean Isme Communications. 1. DOI: 10.1038/S43705-021-00002-6  0.318
2020 Gifford SM, Zhao L, Stemple B, DeLong K, Medeiros PM, Seim H, Marchetti A. Microbial Niche Diversification in the Galápagos Archipelago and Its Response to El Niño. Frontiers in Microbiology. 11: 575194. PMID 33193187 DOI: 10.3389/fmicb.2020.575194  0.333
2020 Sharpe GC, Gifford SM, Septer AN. A Model , Ruegeria pomeroyi DSS-3, Employs a Diffusible Killing Mechanism To Eliminate Competitors. Msystems. 5. PMID 32788406 DOI: 10.1128/mSystems.00443-20  0.416
2019 Damashek J, Edwardson CF, Tolar BB, Gifford SM, Moran MA, Hollibaugh JT. Coastal Ocean Metagenomes and Curated Metagenome-Assembled Genomes from Marsh Landing, Sapelo Island (Georgia, USA). Microbiology Resource Announcements. 8. PMID 31582460 DOI: 10.1128/MRA.00934-19  0.306
2018 Lin Y, Gifford S, Ducklow H, Schofield O, Cassar N. Towards quantitative microbiome community profiling using internal standards. Applied and Environmental Microbiology. PMID 30552195 DOI: 10.1128/Aem.02634-18  0.328
2016 Gifford SM, Becker JW, Sosa OA, Repeta DJ, DeLong EF. Quantitative Transcriptomics Reveals the Growth- and Nutrient-Dependent Response of a Streamlined Marine Methylotroph to Methanol and Naturally Occurring Dissolved Organic Matter. Mbio. 7. PMID 27879330 DOI: 10.1128/Mbio.01279-16  0.542
2015 Varaljay VA, Robidart J, Preston CM, Gifford SM, Durham BP, Burns AS, Ryan JP, Marin Iii R, Kiene RP, Zehr JP, Scholin CA, Ann Moran M. Single-taxon field measurements of bacterial gene regulation controlling DMSP fate. The Isme Journal. 9: 1692. PMID 26100411 DOI: 10.1038/Ismej.2015.94  0.608
2015 Sosa OA, Gifford SM, Repeta DJ, DeLong EF. High molecular weight dissolved organic matter enrichment selects for methylotrophs in dilution to extinction cultures. The Isme Journal. PMID 25978545 DOI: 10.1038/Ismej.2015.68  0.654
2015 Varaljay VA, Robidart J, Preston CM, Gifford SM, Durham BP, Burns AS, Ryan JP, Marin Iii R, Kiene RP, Zehr JP, Scholin CA, Ann Moran M. Single-taxon field measurements of bacterial gene regulation controlling DMSP fate. The Isme Journal. 9: 1677-86. PMID 25700338 DOI: 10.1038/Ismej.2015.23  0.675
2014 Ottesen EA, Young CR, Gifford SM, Eppley JM, Marin R, Schuster SC, Scholin CA, DeLong EF. Ocean microbes. Multispecies diel transcriptional oscillations in open ocean heterotrophic bacterial assemblages. Science (New York, N.Y.). 345: 207-12. PMID 25013074 DOI: 10.1126/Science.1252476  0.689
2014 Hollibaugh JT, Gifford SM, Moran MA, Ross MJ, Sharma S, Tolar BB. Seasonal variation in the metratranscriptomes of a Thaumarchaeota population from SE USA coastal waters Isme Journal. 8: 685-698. PMID 24132081 DOI: 10.1038/Ismej.2013.171  0.373
2013 Reisch CR, Crabb WM, Gifford SM, Teng Q, Stoudemayer MJ, Moran MA, Whitman WB. Metabolism of dimethylsulphoniopropionate by Ruegeria pomeroyi DSS-3. Molecular Microbiology. 89: 774-91. PMID 23815737 DOI: 10.1111/Mmi.12314  0.413
2013 Gifford SM, Sharma S, Booth M, Moran MA. Expression patterns reveal niche diversification in a marine microbial assemblage. The Isme Journal. 7: 281-98. PMID 22931830 DOI: 10.1038/ismej.2012.96  0.454
2012 Varaljay VA, Gifford SM, Wilson ST, Sharma S, Karl DM, Moran MA. Bacterial dimethylsulfoniopropionate degradation genes in the oligotrophic north pacific subtropical gyre. Applied and Environmental Microbiology. 78: 2775-82. PMID 22327587 DOI: 10.1128/Aem.07559-11  0.362
2011 Hollibaugh JT, Gifford S, Sharma S, Bano N, Moran MA. Metatranscriptomic analysis of ammonia-oxidizing organisms in an estuarine bacterioplankton assemblage Isme Journal. 5: 866-878. PMID 21085199 DOI: 10.1038/Ismej.2010.172  0.329
2011 Rinta-Kanto JM, Bürgmann H, Gifford SM, Sun S, Sharma S, del Valle DA, Kiene RP, Moran MA. Analysis of sulfur-related transcription by Roseobacter communities using a taxon-specific functional gene microarray. Environmental Microbiology. 13: 453-67. PMID 20880331 DOI: 10.1111/J.1462-2920.2010.02350.X  0.497
2011 Gifford SM, Sharma S, Rinta-Kanto JM, Moran MA. Quantitative analysis of a deeply sequenced marine microbial metatranscriptome. The Isme Journal. 5: 461-72. PMID 20844569 DOI: 10.1038/ismej.2010.141  0.34
2010 Newton RJ, Griffin LE, Bowles KM, Meile C, Gifford S, Givens CE, Howard EC, King E, Oakley CA, Reisch CR, Rinta-Kanto JM, Sharma S, Sun S, Varaljay V, Vila-Costa M, et al. Genome characteristics of a generalist marine bacterial lineage. The Isme Journal. 4: 784-98. PMID 20072162 DOI: 10.1038/Ismej.2009.150  0.385
Low-probability matches (unlikely to be authored by this person)
2017 Medeiros PM, Seidel M, Gifford SM, Ballantyne F, Dittmar T, Whitman WB, Moran MA. Microbially-Mediated Transformations of Estuarine Dissolved Organic Matter Frontiers in Marine Science. 4. DOI: 10.3389/Fmars.2017.00069  0.299
2018 Wang S, Lin Y, Gifford S, Eveleth R, Cassar N. Linking patterns of net community production and marine microbial community structure in the western North Atlantic. The Isme Journal. PMID 29934639 DOI: 10.1038/S41396-018-0163-4  0.298
2009 Poretsky RS, Gifford S, Rinta-Kanto J, Vila-Costa M, Moran MA. Analyzing gene expression from marine microbial communities using environmental transcriptomics. Journal of Visualized Experiments : Jove. PMID 19229184 DOI: 10.3791/1086  0.289
2013 Moran MA, Satinsky B, Gifford SM, Luo H, Rivers A, Chan LK, Meng J, Durham BP, Shen C, Varaljay VA, Smith CB, Yager PL, Hopkinson BM. Sizing up metatranscriptomics. The Isme Journal. 7: 237-43. PMID 22931831 DOI: 10.1038/Ismej.2012.94  0.269
2014 Gifford S, Satinsky B, Moran MA. Quantitative microbial metatranscriptomics. Methods in Molecular Biology (Clifton, N.J.). 1096: 213-29. PMID 24515372 DOI: 10.1007/978-1-62703-712-9_17  0.266
2014 Gifford SM, Sharma S, Moran MA. Linking activity and function to ecosystem dynamics in a coastal bacterioplankton community. Frontiers in Microbiology. 5: 185. PMID 24795712 DOI: 10.3389/fmicb.2014.00185  0.266
2021 Wang S, Tang W, Delage E, Gifford S, Whitby H, González AG, Eveillard D, Planquette H, Cassar N. Investigating the microbial ecology of coastal hotspots of marine nitrogen fixation in the western North Atlantic. Scientific Reports. 11: 5508. PMID 33750865 DOI: 10.1038/s41598-021-84969-1  0.257
2013 Satinsky BM, Gifford SM, Crump BC, Moran MA. Use of internal standards for quantitative metatranscriptome and metagenome analysis. Methods in Enzymology. 531: 237-50. PMID 24060124 DOI: 10.1016/B978-0-12-407863-5.00012-5  0.248
2024 Stephens BM, Durkin CA, Sharpe G, Nguyen TTH, Albers J, Estapa ML, Steinberg DK, Levine NM, Gifford SM, Carlson CA, Boyd PW, Santoro AE. Direct observations of microbial community succession on sinking marine particles. The Isme Journal. 18. PMID 38365233 DOI: 10.1093/ismejo/wrad010  0.243
2018 Gómez-Consarnau L, Sachdeva R, Gifford SM, Cutter LS, Fuhrman JA, Sañudo-Wilhelmy SA, Moran MA. Mosaic patterns of B-vitamin synthesis and utilization in a natural marine microbial community. Environmental Microbiology. PMID 29659156 DOI: 10.1111/1462-2920.14133  0.243
2021 Dial CN, Speare L, Sharpe GC, Gifford SM, Septer AN, Visick KL. Para-Aminobenzoic Acid, Calcium, and c-di-GMP Induce Formation of Cohesive, Syp-Polysaccharide-Dependent Biofilms in Vibrio fischeri. Mbio. e0203421. PMID 34607467 DOI: 10.1128/mBio.02034-21  0.224
2021 Neave EF, Seim H, Gifford SM, Torano O, Johnson ZI, Páez-Rosas D, Marchetti A. Protistan plankton communities in the Galápagos Archipelago respond to changes in deep water masses resulting from the 2015/16 El Niño. Environmental Microbiology. PMID 34921709 DOI: 10.1111/1462-2920.15863  0.221
2023 Paerl RW, Curtis NP, Bittner MJ, Cohn MR, Gifford SM, Bannon CC, Rowland E, Bertrand EM. Use and detection of a vitamin B1 degradation product yields new views of the marine B1 cycle and plankton metabolite exchange. Mbio. e0006123. PMID 37377416 DOI: 10.1128/mbio.00061-23  0.21
2019 Tang W, Wang S, Fonseca-Batista D, Dehairs F, Gifford S, Gonzalez AG, Gallinari M, Planquette H, Sarthou G, Cassar N. Revisiting the distribution of oceanic N fixation and estimating diazotrophic contribution to marine production. Nature Communications. 10: 831. PMID 30783106 DOI: 10.1038/S41467-019-08640-0  0.205
2020 Septer AN, Speare L, Coleman CK, Smith S, Dorsey C, Wilson T, Gifford SM. Draft Genome Sequence of a Harveyi Clade Bacterium Isolated from Lolliguncula brevis Squid. Microbiology Resource Announcements. 9. PMID 32079629 DOI: 10.1128/MRA.00078-20  0.199
2007 Gifford S, Dunstan RH, O'Connor W, Koller CE, MacFarlane GR. Aquatic zooremediation: deploying animals to remediate contaminated aquatic environments. Trends in Biotechnology. 25: 60-5. PMID 17173992 DOI: 10.1016/j.tibtech.2006.12.002  0.177
2007 Gifford SM, Rollwagen-Bollens G, Bollens SM. Mesozooplankton omnivory in the upper San Francisco Estuary Marine Ecology Progress Series. 348: 33-46. DOI: 10.3354/meps07003  0.144
2011 Rollwagen-Bollens G, Gifford S, Bollens SM. The Role of Protistan Microzooplankton in the Upper San Francisco Estuary Planktonic Food Web: Source or Sink? Estuaries and Coasts. 34: 1026-1038. DOI: 10.1007/s12237-011-9374-x  0.069
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