| Year |
Citation |
Score |
| 2023 |
Liu Z, Panja D, Barkema GT. Domain Growth in Polycrystalline Graphene. Nanomaterials (Basel, Switzerland). 13. PMID 38133024 DOI: 10.3390/nano13243127 |
0.519 |
|
| 2023 |
Staniczenko PPA, Panja D. Temporal origin of nestedness in interaction networks. Pnas Nexus. 2: pgad412. PMID 38077691 DOI: 10.1093/pnasnexus/pgad412 |
0.519 |
|
| 2023 |
Dekker MM, Coffeng LE, Pijpers FP, Panja D, de Vlas SJ. Reducing societal impacts of SARS-CoV-2 interventions through subnational implementation. Elife. 12. PMID 36880190 DOI: 10.7554/eLife.80819 |
0.519 |
|
| 2022 |
Dekker MM, Schram RD, Ou J, Panja D. Hidden dependence of spreading vulnerability on topological complexity. Physical Review. E. 105: 054301. PMID 35706267 DOI: 10.1103/PhysRevE.105.054301 |
0.535 |
|
| 2022 |
Liu Z, Panja D, Barkema GT. Structural dynamics of polycrystalline graphene. Physical Review. E. 105: 044116. PMID 35590534 DOI: 10.1103/PhysRevE.105.044116 |
0.533 |
|
| 2022 |
Dekker MM, Blanken TF, Dablander F, Ou J, Borsboom D, Panja D. Quantifying agent impacts on contact sequences in social interactions. Scientific Reports. 12: 3483. PMID 35241710 DOI: 10.1038/s41598-022-07384-0 |
0.534 |
|
| 2021 |
Duan K, Gu Q, Petralia RS, Wang YX, Panja D, Liu X, Lehmann ML, Zhu H, Zhu J, Li Z. Mitophagy in the basolateral amygdala mediates increased anxiety induced by aversive social experience. Neuron. PMID 34614419 DOI: 10.1016/j.neuron.2021.09.008 |
0.564 |
|
| 2021 |
Dekker MM, França ASC, Panja D, Cohen MX. Characterizing neural phase-space trajectories via Principal Louvain Clustering. Journal of Neuroscience Methods. 109313. PMID 34384798 DOI: 10.1016/j.jneumeth.2021.109313 |
0.521 |
|
| 2021 |
Panja D, Li Y, Ward ME, Li Z. miR-936 is Increased in Schizophrenia and Inhibits Neural Development and AMPA Receptor-Mediated Synaptic Transmission. Schizophrenia Bulletin. PMID 33940617 DOI: 10.1093/schbul/sbab046 |
0.587 |
|
| 2021 |
Zhao J, Zhu H, Duan K, Petralia RS, Wang YX, Gu Q, Panja D, Li Z. Dysbindin-1 regulates mitochondrial fission and gamma oscillations. Molecular Psychiatry. PMID 33589740 DOI: 10.1038/s41380-021-01038-9 |
0.565 |
|
| 2021 |
Dekker MM, Panja D. Cascading dominates large-scale disruptions in transport over complex networks. Plos One. 16: e0246077. PMID 33493175 DOI: 10.1371/journal.pone.0246077 |
0.545 |
|
| 2020 |
Zhong W, Barkema GT, Panja D. Super slowing down in the bond-diluted Ising model. Physical Review. E. 102: 022132. PMID 32942400 DOI: 10.1103/PhysRevE.102.022132 |
0.529 |
|
| 2020 |
Shen H, Zhu H, Panja D, Gu Q, Li Z. Autophagy controls the induction and developmental decline of NMDAR-LTD through endocytic recycling. Nature Communications. 11: 2979. PMID 32532981 DOI: 10.1038/S41467-020-16794-5 |
0.616 |
|
| 2019 |
Hu Z, Gao S, Lindberg D, Panja D, Wakabayashi Y, Li K, Kleinman JE, Zhu J, Li Z. Correction: Temporal dynamics of miRNAs in human DLPFC and its association with miRNA dysregulation in schizophrenia. Translational Psychiatry. 9: 237. PMID 31548542 DOI: 10.1038/s41398-019-0572-9 |
0.553 |
|
| 2019 |
Zhong W, Panja D, Barkema GT. Approximate dynamical eigenmodes of the Ising model with local spin-exchange moves. Physical Review. E. 100: 012132. PMID 31499883 DOI: 10.1103/PhysRevE.100.012132 |
0.55 |
|
| 2019 |
Hu Z, Gao S, Lindberg D, Panja D, Wakabayashi Y, Li K, Kleinman JE, Zhu J, Li Z. Temporal dynamics of miRNAs in human DLPFC and its association with miRNA dysregulation in schizophrenia. Translational Psychiatry. 9: 196. PMID 31431609 DOI: 10.1038/S41398-019-0538-Y |
0.567 |
|
| 2019 |
Dekker MM, Panja D, Dijkstra HA, Dekker SC. Predicting transitions across macroscopic states for railway systems. Plos One. 14: e0217710. PMID 31170230 DOI: 10.1371/journal.pone.0217710 |
0.542 |
|
| 2018 |
Zhong W, Panja D, Barkema GT, Ball RC. Generalized Langevin equation formulation for anomalous diffusion in the Ising model at the critical temperature. Physical Review. E. 98: 012124. PMID 30110729 DOI: 10.1103/PhysRevE.98.012124 |
0.539 |
|
| 2017 |
Nair RR, Patil S, Tiron A, Kanhema T, Panja D, Schiro L, Parobczak K, Wilczynski G, Bramham CR. Dynamic Arc SUMOylation and Selective Interaction with F-Actin-Binding Protein Drebrin A in LTP Consolidation In Vivo. Frontiers in Synaptic Neuroscience. 9: 8. PMID 28553222 DOI: 10.3389/Fnsyn.2017.00008 |
0.726 |
|
| 2017 |
Maag JL, Kaczorowski DC, Panja D, Peters TJ, Bramham CR, Wibrand K, Dinger ME. Widespread promoter methylation of synaptic plasticity genes in long-term potentiation in the adult brain in vivo. Bmc Genomics. 18: 250. PMID 28335720 DOI: 10.1186/S12864-017-3621-X |
0.698 |
|
| 2016 |
Maag JL, Panja D, Sporild I, Patil SS, Kaczorowski DC, Bramham CR, Dinger ME, Wibrand K. Corrigendum: Dynamic expression of long noncoding RNAs and repeat elements in synaptic plasticity. Frontiers in Neuroscience. 10: 354. PMID 27471449 DOI: 10.3389/Fnins.2016.00354 |
0.692 |
|
| 2016 |
Panja D, Barkema GT, van Leeuwen JM. Dynamics of a double-stranded DNA segment in a shear flow. Physical Review. E. 93: 042501. PMID 27176342 DOI: 10.1103/PhysRevE.93.042501 |
0.57 |
|
| 2015 |
Maag JL, Panja D, Sporild I, Patil S, Kaczorowski DC, Bramham CR, Dinger ME, Wibrand K. Dynamic expression of long noncoding RNAs and repeat elements in synaptic plasticity. Frontiers in Neuroscience. 9: 351. PMID 26483626 DOI: 10.3389/Fnins.2015.00351 |
0.725 |
|
| 2015 |
Panja D, Barkema GT, van Leeuwen JM. Efficient simulation of semiflexible polymers. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 92: 032603. PMID 26465491 DOI: 10.1103/PhysRevE.92.032603 |
0.565 |
|
| 2015 |
Bojovic O, Panja D, Bittins M, Bramham CR, Tjølsen A. Time course of immediate early gene protein expression in the spinal cord following conditioning stimulation of the sciatic nerve in rats. Plos One. 10: e0123604. PMID 25860146 DOI: 10.1371/Journal.Pone.0123604 |
0.667 |
|
| 2014 |
Panja D, Kenney JW, D'Andrea L, Zalfa F, Vedeler A, Wibrand K, Fukunaga R, Bagni C, Proud CG, Bramham CR. Two-stage translational control of dentate gyrus LTP consolidation is mediated by sustained BDNF-TrkB signaling to MNK. Cell Reports. 9: 1430-45. PMID 25453757 DOI: 10.1016/J.Celrep.2014.10.016 |
0.709 |
|
| 2014 |
Schubert M, Panja D, Haugen M, Bramham CR, Vedeler CA. Paraneoplastic CDR2 and CDR2L antibodies affect Purkinje cell calcium homeostasis. Acta Neuropathologica. 128: 835-52. PMID 25341622 DOI: 10.1007/S00401-014-1351-6 |
0.713 |
|
| 2014 |
Bramham CR, Panja D. BDNF regulation of synaptic structure, function, and plasticity. Neuropharmacology. 76: 601-2. PMID 23973290 DOI: 10.1016/J.Neuropharm.2013.08.012 |
0.708 |
|
| 2014 |
Panja D, Bramham CR. BDNF mechanisms in late LTP formation: A synthesis and breakdown. Neuropharmacology. 76: 664-76. PMID 23831365 DOI: 10.1016/J.Neuropharm.2013.06.024 |
0.719 |
|
| 2013 |
Panja D, Barkema GT, Kolomeisky AB. Through the eye of the needle: recent advances in understanding biopolymer translocation. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 25: 413101. PMID 24025200 DOI: 10.1088/0953-8984/25/41/413101 |
0.558 |
|
| 2013 |
Lemay SG, Panja D, Molineux IJ. Role of osmotic and hydrostatic pressures in bacteriophage genome ejection. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 87: 022714. PMID 23496555 DOI: 10.1103/Physreve.87.022714 |
0.521 |
|
| 2013 |
Molineux IJ, Panja D. Popping the cork: mechanisms of phage genome ejection. Nature Reviews. Microbiology. 11: 194-204. PMID 23385786 DOI: 10.1038/Nrmicro2988 |
0.524 |
|
| 2013 |
Wibrand K, Berge K, Messaoudi M, Duffaud A, Panja D, Bramham CR, Burri L. Enhanced cognitive function and antidepressant-like effects after krill oil supplementation in rats. Lipids in Health and Disease. 12: 6. PMID 23351783 DOI: 10.1186/1476-511X-12-6 |
0.644 |
|
| 2012 |
Gal-Ben-Ari S, Kenney JW, Ounalla-Saad H, Taha E, David O, Levitan D, Gildish I, Panja D, Pai B, Wibrand K, Simpson TI, Proud CG, Bramham CR, Armstrong JD, Rosenblum K. Consolidation and translation regulation. Learning & Memory (Cold Spring Harbor, N.Y.). 19: 410-22. PMID 22904372 DOI: 10.1101/Lm.026849.112 |
0.708 |
|
| 2011 |
Hatlo MM, Panja D, van Roij R. Translocation of DNA molecules through nanopores with salt gradients: the role of osmotic flow. Physical Review Letters. 107: 068101. PMID 21902370 DOI: 10.1103/PhysRevLett.107.068101 |
0.518 |
|
| 2011 |
Barkema GT, Panja D, van Leeuwen JM. Structural modes of a polymer in the repton model. The Journal of Chemical Physics. 134: 154901. PMID 21513412 DOI: 10.1063/1.3580287 |
0.545 |
|
| 2011 |
Panja D. Probabilistic phase space trajectory description for anomalous polymer dynamics. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 23: 105103. PMID 21335642 DOI: 10.1088/0953-8984/23/10/105103 |
0.56 |
|
| 2010 |
Panja D, Molineux IJ. Dynamics of bacteriophage genome ejection in vitro and in vivo. Physical Biology. 7: 045006. PMID 21149974 DOI: 10.1088/1478-3975/7/4/045006 |
0.519 |
|
| 2010 |
Wibrand K, Panja D, Tiron A, Ofte ML, Skaftnesmo KO, Lee CS, Pena JT, Tuschl T, Bramham CR. Differential regulation of mature and precursor microRNA expression by NMDA and metabotropic glutamate receptor activation during LTP in the adult dentate gyrus in vivo. The European Journal of Neuroscience. 31: 636-45. PMID 20384810 DOI: 10.1111/J.1460-9568.2010.07112.X |
0.689 |
|
| 2010 |
Panja D, Barkema GT. Simulations of two-dimensional unbiased polymer translocation using the bond fluctuation model. The Journal of Chemical Physics. 132: 014902. PMID 20078179 DOI: 10.1063/1.3281641 |
0.553 |
|
| 2010 |
Bramham CR, Alme MN, Bittins M, Kuipers SD, Nair RR, Pai B, Panja D, Schubert M, Soule J, Tiron A, Wibrand K. The Arc of synaptic memory. Experimental Brain Research. 200: 125-40. PMID 19690847 DOI: 10.1007/S00221-009-1959-2 |
0.769 |
|
| 2009 |
Vocks H, Panja D, Barkema GT. Amplitude and frequency spectra of thermal fluctuations of a translocating RNA molecule. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 21: 375105. PMID 21832336 DOI: 10.1088/0953-8984/21/37/375105 |
0.517 |
|
| 2009 |
Panja D, Barkema GT, Ball RC. Reply to the comment on 'Anomalous dynamics of unbiased polymer translocation through a narrow pore' and other recent papers by D Panja, G Barkema and R Ball. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 21: 098002. PMID 21817412 DOI: 10.1088/0953-8984/21/9/098002 |
0.548 |
|
| 2009 |
Panja D, Barkema GT, Kolomeisky AB. Non-equilibrium dynamics of single polymer adsorption to solid surfaces. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 21: 242101. PMID 21693933 DOI: 10.1088/0953-8984/21/24/242101 |
0.537 |
|
| 2009 |
Panja D, Barkema GT. Rouse modes of self-avoiding flexible polymers. The Journal of Chemical Physics. 131: 154903. PMID 20568880 DOI: 10.1063/1.3244678 |
0.558 |
|
| 2009 |
Panja D, Dagyte G, Bidinosti M, Wibrand K, Kristiansen AM, Sonenberg N, Bramham CR. Novel translational control in Arc-dependent long term potentiation consolidation in vivo. The Journal of Biological Chemistry. 284: 31498-511. PMID 19755425 DOI: 10.1074/Jbc.M109.056077 |
0.712 |
|
| 2009 |
Panja D. Response of single polymers to localized step strains. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 79: 011803. PMID 19257060 DOI: 10.1103/PhysRevE.79.011803 |
0.542 |
|
| 2008 |
Panja D, Barkema GT. Passage times for polymer translocation pulled through a narrow pore. Biophysical Journal. 94: 1630-7. PMID 17951294 DOI: 10.1529/biophysj.107.116434 |
0.552 |
|
| 2006 |
Ostojic S, Panja D. Elasticity from the force network ensemble in granular media. Physical Review Letters. 97: 208001. PMID 17155718 DOI: 10.1103/PhysRevLett.97.208001 |
0.527 |
|
| 2006 |
Kanhema T, Dagestad G, Panja D, Tiron A, Messaoudi E, Håvik B, Ying SW, Nairn AC, Sonenberg N, Bramham CR. Dual regulation of translation initiation and peptide chain elongation during BDNF-induced LTP in vivo: evidence for compartment-specific translation control. Journal of Neurochemistry. 99: 1328-37. PMID 17064361 DOI: 10.1111/J.1471-4159.2006.04158.X |
0.744 |
|
| 2006 |
Wolterink JK, Barkema GT, Panja D. Passage times for unbiased polymer translocation through a narrow pore. Physical Review Letters. 96: 208301. PMID 16803213 DOI: 10.1103/PhysRevLett.96.208301 |
0.553 |
|
| 2004 |
Panja D. Fluctuating fronts as correlated extreme value problems: An example of Gaussian statistics. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 70: 036101. PMID 15524581 DOI: 10.1103/PhysRevE.70.036101 |
0.507 |
|
| 2004 |
Ostojic S, Panja D, Nienhuis B. Clustering in a one-dimensional inelastic lattice gas. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 69: 041301. PMID 15169011 DOI: 10.1103/Physreve.69.041301 |
0.535 |
|
| 2003 |
Panja D. Asymptotic scaling of the diffusion coefficient of fluctuating "pulled" fronts. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 68: 065202. PMID 14754253 |
0.531 |
|
| 2003 |
Panja D, Tripathy G, van Saarloos W. Front propagation and diffusion in the A left arrow over right arrow A+A hard-core reaction on a chain. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 67: 046206. PMID 12786459 |
0.534 |
|
| 2002 |
Panja D, van Saarloos W. Fluctuating pulled fronts: The origin and the effects of a finite particle cutoff. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 66: 036206. PMID 12366223 DOI: 10.1103/PhysRevE.66.036206 |
0.545 |
|
| 2002 |
Panja D, van Saarloos W. Fronts with a growth cutoff but with speed higher than the linear spreading speed. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 66: 015206. PMID 12241416 DOI: 10.1103/PhysRevE.66.015206 |
0.522 |
|
| 2002 |
Panja D, Van Zon R. Pairing of Lyapunov exponents for a hard-sphere gas under shear in the thermodynamic limit. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 66: 021101. PMID 12241144 DOI: 10.1103/PhysRevE.66.021101 |
0.547 |
|
| 2002 |
Panja D, Van Zon R. Lyapunov exponent pairing for a thermostatted hard-sphere gas under shear in the thermodynamic limit. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 65: 060102. PMID 12188691 DOI: 10.1103/PhysRevE.65.060102 |
0.53 |
|
| 2002 |
Panja D, van Saarloos W. Weakly pushed nature of "pulled" fronts with a cutoff. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 65: 057202. PMID 12059760 DOI: 10.1103/PhysRevE.65.057202 |
0.524 |
|
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