| Year |
Citation |
Score |
| 2017 |
Park E, Guo J, Shen S, Demirdjian L, Wu YN, Lin L, Xing Y. Population and allelic variation of A-to-I RNA editing in human transcriptomes. Genome Biology. 18: 143. PMID 28754146 DOI: 10.1186/S13059-017-1270-7 |
0.324 |
|
| 2017 |
Wang J, Pan Y, Shen S, Lin L, Xing Y. rMATS-DVR: rMATS discovery of Differential Variants in RNA. Bioinformatics (Oxford, England). PMID 28334241 DOI: 10.1093/Bioinformatics/Btx128 |
0.346 |
|
| 2016 |
Lin L, Park JW, Ramachandran S, Zhang Y, Tseng YT, Shen S, Waldvogel HJ, Curtis MA, Faull RL, Troncoso JC, Ross CA, Davidson BL, Xing Y. Transcriptome sequencing reveals aberrant alternative splicing in Huntington's disease. Human Molecular Genetics. PMID 27378699 DOI: 10.1093/Hmg/Ddw187 |
0.352 |
|
| 2016 |
Shen S, Wang Y, Wang C, Wu YN, Xing Y. SURVIV for survival analysis of mRNA isoform variation. Nature Communications. 7: 11548. PMID 27279334 DOI: 10.1038/Ncomms11548 |
0.322 |
|
| 2016 |
Liu YS, Haq AFMS, Kao TT, Mehta K, Shen SC, Detchprohm T, Yoder PD, Dupuis RD, Xie H, Ponce FA. Electrically conducting n-type AlGaN/GaN distributed Bragg reflectors grown by metalorganic chemical vapor deposition Journal of Crystal Growth. 443: 81-84. DOI: 10.1016/J.Jcrysgro.2016.03.027 |
0.335 |
|
| 2015 |
Lu ZX, Huang Q, Park JW, Shen S, Lin L, Tokheim CJ, Henry MD, Xing Y. Transcriptome-wide landscape of pre-mRNA alternative splicing associated with metastatic colonization. Molecular Cancer Research : McR. 13: 305-18. PMID 25274489 DOI: 10.1158/1541-7786.Mcr-14-0366 |
0.36 |
|
| 2014 |
Shen S, Park JW, Lu ZX, Lin L, Henry MD, Wu YN, Zhou Q, Xing Y. rMATS: robust and flexible detection of differential alternative splicing from replicate RNA-Seq data. Proceedings of the National Academy of Sciences of the United States of America. 111: E5593-601. PMID 25480548 DOI: 10.1073/Pnas.1419161111 |
0.357 |
|
| 2014 |
Shi X, Shen S, Liu J, Huang J, Zhou Y, Ma S. Similarity of markers identified from cancer gene expression studies: observations from GEO. Briefings in Bioinformatics. 15: 671-84. PMID 23788798 DOI: 10.1093/Bib/Bbt044 |
0.371 |
|
| 2014 |
Shen S, Wu YN, Xing Y. Abstract 4277: Alternative splicing in cancer transcriptomes Cancer Research. 74: 4277-4277. DOI: 10.1158/1538-7445.Am2014-4277 |
0.349 |
|
| 2013 |
Heinicke LA, Nabet B, Shen S, Jiang P, van Zalen S, Cieply B, Russell JE, Xing Y, Carstens RP. The RNA binding protein RBM38 (RNPC1) regulates splicing during late erythroid differentiation. Plos One. 8: e78031. PMID 24250749 DOI: 10.1371/Journal.Pone.0078031 |
0.365 |
|
| 2013 |
Park JW, Tokheim C, Shen S, Xing Y. Identifying differential alternative splicing events from RNA sequencing data using RNASeq-MATS. Methods in Molecular Biology (Clifton, N.J.). 1038: 171-9. PMID 23872975 DOI: 10.1007/978-1-62703-514-9_10 |
0.385 |
|
| 2012 |
Dittmar KA, Jiang P, Park JW, Amirikian K, Wan J, Shen S, Xing Y, Carstens RP. Genome-wide determination of a broad ESRP-regulated posttranscriptional network by high-throughput sequencing. Molecular and Cellular Biology. 32: 1468-82. PMID 22354987 DOI: 10.1128/Mcb.06536-11 |
0.375 |
|
| 2012 |
Shen S, Park JW, Huang J, Dittmar KA, Lu ZX, Zhou Q, Carstens RP, Xing Y. MATS: a Bayesian framework for flexible detection of differential alternative splicing from RNA-Seq data. Nucleic Acids Research. 40: e61. PMID 22266656 DOI: 10.1093/Nar/Gkr1291 |
0.442 |
|
| 2011 |
Shen S, Lin L, Cai JJ, Jiang P, Kenkel EJ, Stroik MR, Sato S, Davidson BL, Xing Y. Widespread establishment and regulatory impact of Alu exons in human genes. Proceedings of the National Academy of Sciences of the United States of America. 108: 2837-42. PMID 21282640 DOI: 10.1073/Pnas.1012834108 |
0.384 |
|
| 2010 |
Warzecha CC, Jiang P, Amirikian K, Dittmar KA, Lu H, Shen S, Guo W, Xing Y, Carstens RP. An ESRP-regulated splicing programme is abrogated during the epithelial-mesenchymal transition. The Embo Journal. 29: 3286-300. PMID 20711167 DOI: 10.1038/Emboj.2010.195 |
0.372 |
|
| 2010 |
Lin L, Shen S, Jiang P, Sato S, Davidson BL, Xing Y. Evolution of alternative splicing in primate brain transcriptomes. Human Molecular Genetics. 19: 2958-73. PMID 20460271 DOI: 10.1093/Hmg/Ddq201 |
0.345 |
|
| 2010 |
Lin CL, Evans V, Shen S, Xing Y, Richter JD. The nuclear experience of CPEB: implications for RNA processing and translational control. Rna (New York, N.Y.). 16: 338-48. PMID 20040591 DOI: 10.1261/Rna.1779810 |
0.324 |
|
| 2010 |
Shen S, Warzecha CC, Carstens RP, Xing Y. MADS+: discovery of differential splicing events from Affymetrix exon junction array data. Bioinformatics (Oxford, England). 26: 268-9. PMID 19933160 DOI: 10.1093/Bioinformatics/Btp643 |
0.35 |
|
| 2009 |
Ma S, Huang J, Shen S. Identification of cancer-associated gene clusters and genes via clustering penalization. Statistics and Its Interface. 2: 1-11. PMID 20057914 DOI: 10.4310/Sii.2009.V2.N1.A1 |
0.345 |
|
| 2009 |
Warzecha CC, Shen S, Xing Y, Carstens RP. The epithelial splicing factors ESRP1 and ESRP2 positively and negatively regulate diverse types of alternative splicing events. Rna Biology. 6: 546-62. PMID 19829082 DOI: 10.4161/Rna.6.5.9606 |
0.382 |
|
| 2008 |
Lin L, Shen S, Tye A, Cai JJ, Jiang P, Davidson BL, Xing Y. Diverse splicing patterns of exonized Alu elements in human tissues. Plos Genetics. 4: e1000225. PMID 18841251 DOI: 10.1371/Journal.Pgen.1000225 |
0.309 |
|
| 2008 |
Xing Y, Stoilov P, Kapur K, Han A, Jiang H, Shen S, Black DL, Wong WH. MADS: a new and improved method for analysis of differential alternative splicing by exon-tiling microarrays. Rna (New York, N.Y.). 14: 1470-9. PMID 18566192 DOI: 10.1261/Rna.1070208 |
0.365 |
|
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