Yuseob Kim, Ph.D. - Publications

Affiliations: 
2002 University of Rochester, Rochester, NY 

39 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Kim Y. Partial protection from fluctuating selection leads to evolution towards wider population size fluctuation and a novel mechanism of balancing selection. Proceedings. Biological Sciences. 290: 20230822. PMID 37339748 DOI: 10.1098/rspb.2023.0822  0.35
2021 Croze M, Kim Y. Inference of population genetic parameters from an irregular time series of seasonal influenza virus sequences. Genetics. 217. PMID 33724414 DOI: 10.1093/genetics/iyaa039  0.308
2019 Park Y, Kim Y. Partial protection from cyclical selection generates a high level of polymorphism at multiple non-neutral sites. Evolution; International Journal of Organic Evolution. PMID 31273751 DOI: 10.1111/Evo.13792  0.429
2017 Kim Y. Prevalence of negative frequency-dependent selection, revealed by incomplete selective sweeps in African populations of Drosophila melanogaster. Bmb Reports. PMID 29187282 DOI: 10.5483/Bmbrep.2018.51.1.226  0.482
2017 Ha My TV, Won YJ, Kim Y. Multiple Modes of Positive Selection Shaping the Patterns of Incomplete Selective Sweeps over African Populations of Drosophila melanogaster. Molecular Biology and Evolution. PMID 28981697 DOI: 10.1093/Molbev/Msx207  0.481
2016 Kim K, Kim Y. Population genetic processes affecting the mode of selective sweeps and effective population size in influenza virus H3N2. Bmc Evolutionary Biology. 16: 156. PMID 27487769 DOI: 10.1186/S12862-016-0727-8  0.403
2016 Gulisija D, Kim Y, Plotkin JB. Phenotypic Plasticity Promotes Balanced Polymorphism in Periodic Environments by a Genomic Storage Effect. Genetics. PMID 26857626 DOI: 10.1534/Genetics.115.185702  0.451
2015 Chang YY, Wang MZ, Abdesselam A, Adachi I, Adamczyk K, Aihara H, Al Said S, Asner DM, Atmacan H, Aushev T, Babu V, Badhrees I, Bakich AM, Barberio E, Bhuyan B, ... ... Kim YJ, et al. Observation of B^{0}→pΛ[over ¯]D^{(*)-}. Physical Review Letters. 115: 221803. PMID 26650291 DOI: 10.1103/Physrevlett.115.221803  0.315
2015 Vy HM, Kim Y. A Composite-Likelihood Method for Detecting Incomplete Selective Sweep from Population Genomic Data. Genetics. 200: 633-49. PMID 25911658 DOI: 10.1534/Genetics.115.175380  0.498
2015 Moon S, Kim TH, Lee KT, Kwak W, Lee T, Lee SW, Kim MJ, Cho K, Kim N, Chung WH, Sung S, Park T, Cho S, Groenen MA, Nielsen R, ... Kim Y, et al. A genome-wide scan for signatures of directional selection in domesticated pigs. Bmc Genomics. 16: 130. PMID 25765548 DOI: 10.1186/S12864-015-1330-X  0.444
2015 Gulisija D, Kim Y. Emergence of long-term balanced polymorphism under cyclic selection of spatially variable magnitude. Evolution; International Journal of Organic Evolution. 69: 979-92. PMID 25707330 DOI: 10.1111/Evo.12630  0.447
2015 Kim K, Kim Y. Episodic nucleotide substitutions in seasonal influenza virus H3N2 can be explained by stochastic genealogical process without positive selection. Molecular Biology and Evolution. 32: 704-10. PMID 25492497 DOI: 10.1093/Molbev/Msu332  0.367
2013 Schneider KA, Kim Y. Genetic hitchhiking under heterogeneous spatial selection pressures. Plos One. 8: e61742. PMID 23637897 DOI: 10.1371/Journal.Pone.0061742  0.467
2013 Kim Y. Stochastic patterns of polymorphism after a selective sweep over a subdivided population. Genetics Research. 95: 57-67. PMID 23561486 DOI: 10.1017/S0016672313000062  0.451
2012 Maruki T, Kumar S, Kim Y. Purifying selection modulates the estimates of population differentiation and confounds genome-wide comparisons across single-nucleotide polymorphisms. Molecular Biology and Evolution. 29: 3617-23. PMID 22826460 DOI: 10.1093/Molbev/Mss187  0.418
2012 Dudley JT, Kim Y, Liu L, Markov GJ, Gerold K, Chen R, Butte AJ, Kumar S. Human genomic disease variants: a neutral evolutionary explanation. Genome Research. 22: 1383-94. PMID 22665443 DOI: 10.1101/Gr.133702.111  0.325
2011 Kim Y, Maruki T. Hitchhiking effect of a beneficial mutation spreading in a subdivided population. Genetics. 189: 213-26. PMID 21705748 DOI: 10.1534/Genetics.111.130203  0.468
2011 Schneider KA, Kim Y. Approximations for the hitchhiking effect caused by the evolution of antimalarial-drug resistance. Journal of Mathematical Biology. 62: 789-832. PMID 20623287 DOI: 10.1007/S00285-010-0353-9  0.355
2010 Schneider KA, Kim Y. An analytical model for genetic hitchhiking in the evolution of antimalarial drug resistance. Theoretical Population Biology. 78: 93-108. PMID 20600206 DOI: 10.1016/J.Tpb.2010.06.005  0.372
2010 Kim Y, Gulisija D. Signatures of recent directional selection under different models of population expansion during colonization of new selective environments. Genetics. 184: 571-85. PMID 19966066 DOI: 10.1534/genetics.109.109447  0.381
2009 Escalante AA, Smith DL, Kim Y. The dynamics of mutations associated with anti-malarial drug resistance in Plasmodium falciparum. Trends in Parasitology. 25: 557-63. PMID 19864183 DOI: 10.1016/J.Pt.2009.09.008  0.311
2009 Kim Y, Wiehe T. Simulation of DNA sequence evolution under models of recent directional selection. Briefings in Bioinformatics. 10: 84-96. PMID 19109303 DOI: 10.1093/Bib/Bbn048  0.608
2008 Innan H, Kim Y. Detecting local adaptation using the joint sampling of polymorphism data in the parental and derived populations. Genetics. 179: 1713-20. PMID 18562650 DOI: 10.1534/Genetics.108.086835  0.413
2008 Babbitt GA, Kim Y. Inferring natural selection on fine-scale chromatin organization in yeast. Molecular Biology and Evolution. 25: 1714-27. PMID 18515262 DOI: 10.1093/Molbev/Msn127  0.344
2007 Kim Y. Rate of adaptive peak shifts with partial genetic robustness. Evolution; International Journal of Organic Evolution. 61: 1847-56. PMID 17683428 DOI: 10.1111/J.1558-5646.2007.00166.X  0.42
2006 Xue Y, Daly A, Yngvadottir B, Liu M, Coop G, Kim Y, Sabeti P, Chen Y, Stalker J, Huckle E, Burton J, Leonard S, Rogers J, Tyler-Smith C. Spread of an inactive form of caspase-12 in humans is due to recent positive selection. American Journal of Human Genetics. 78: 659-70. PMID 16532395 DOI: 10.1086/503116  0.425
2006 Kim Y. Allele frequency distribution under recurrent selective sweeps. Genetics. 172: 1967-78. PMID 16361239 DOI: 10.1534/Genetics.105.048447  0.454
2005 Nielsen R, Williamson S, Kim Y, Hubisz MJ, Clark AG, Bustamante C. Genomic scans for selective sweeps using SNP data. Genome Research. 15: 1566-75. PMID 16251466 DOI: 10.1101/Gr.4252305  0.432
2005 Kim Y, Orr HA. Adaptation in sexuals vs. asexuals: clonal interference and the Fisher-Muller model. Genetics. 171: 1377-86. PMID 16020775 DOI: 10.1534/Genetics.105.045252  0.339
2005 Jensen JD, Kim Y, DuMont VB, Aquadro CF, Bustamante CD. Distinguishing between selective sweeps and demography using DNA polymorphism data. Genetics. 170: 1401-10. PMID 15911584 DOI: 10.1534/Genetics.104.038224  0.421
2004 Meiklejohn CD, Kim Y, Hartl DL, Parsch J. Identification of a locus under complex positive selection in Drosophila simulans by haplotype mapping and composite-likelihood estimation. Genetics. 168: 265-79. PMID 15454542 DOI: 10.1534/Genetics.103.025494  0.676
2004 Kim Y, Nielsen R. Linkage disequilibrium as a signature of selective sweeps. Genetics. 167: 1513-24. PMID 15280259 DOI: 10.1534/Genetics.103.025387  0.448
2004 Innan H, Kim Y. Pattern of polymorphism after strong artificial selection in a domestication event. Proceedings of the National Academy of Sciences of the United States of America. 101: 10667-72. PMID 15249682 DOI: 10.1073/Pnas.0401720101  0.481
2004 Kim Y. Effect of strong directional selection on weakly selected mutations at linked sites: implication for synonymous codon usage. Molecular Biology and Evolution. 21: 286-94. PMID 14660698 DOI: 10.1093/Molbev/Msh020  0.465
2003 Kim Y, Stephan W. Selective sweeps in the presence of interference among partially linked loci. Genetics. 164: 389-98. PMID 12750349  0.611
2002 Kim Y, Stephan W. Detecting a local signature of genetic hitchhiking along a recombining chromosome. Genetics. 160: 765-77. PMID 11861577  0.589
2000 Kim Y, Stephan W. Joint effects of genetic hitchhiking and background selection on neutral variation. Genetics. 155: 1415-27. PMID 10880499  0.618
1999 Kim Y, Stephan W. Allele frequency changes in artificial selection experiments: Statistical power and precision of QTL mapping Genetical Research. 73: 177-184. DOI: 10.1017/S0016672398003711  0.619
1998 Stephan W, Kim Y. Persistence of microsatellite arrays in finite populations. Molecular Biology and Evolution. 15: 1332-6. PMID 9787438 DOI: 10.1093/Oxfordjournals.Molbev.A025861  0.592
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