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Katherine A. Jones - Publications

Affiliations: 
University of California, San Diego, La Jolla, CA 
Area:
Molecular Biology, Biochemistry
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60 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Qiu Z, Zhao L, Shen JZ, Liang Z, Wu Q, Yang K, Min L, Gimple RC, Yang Q, Bhargava S, Jin C, Kim C, Hinz D, Dixit D, Bernatchez JA, ... ... Jones KA, et al. Transcription Elongation Machinery Is a Druggable Dependency and Potentiates Immunotherapy in Glioblastoma Stem Cells. Cancer Discovery. PMID 34615656 DOI: 10.1158/2159-8290.CD-20-1848  0.351
2020 Choi SH, Kim S, Jones KA. Gene expression regulation by CDK12: a versatile kinase in cancer with functions beyond CTD phosphorylation. Experimental & Molecular Medicine. PMID 32451425 DOI: 10.1038/S12276-020-0442-9  0.384
2019 Choi SH, Martinez TF, Kim S, Donaldson C, Shokhirev MN, Saghatelian A, Jones KA. CDK12 phosphorylates 4E-BP1 to enable mTORC1-dependent translation and mitotic genome stability. Genes & Development. PMID 30819820 DOI: 10.1101/Gad.322339.118  0.381
2018 Hsu HT, Estarás C, Huang L, Jones KA. Specifying the Anterior Primitive Streak by Modulating YAP1 Levels in Human Pluripotent Stem Cells. Stem Cell Reports. PMID 30449705 DOI: 10.1016/J.Stemcr.2018.10.013  0.322
2018 Xu M, Moresco JJ, Chang M, Mukim A, Smith D, Diedrich JK, Yates JR, Jones KA. SHMT2 and the BRCC36/BRISC deubiquitinase regulate HIV-1 Tat K63-ubiquitylation and destruction by autophagy. Plos Pathogens. 14: e1007071. PMID 29791506 DOI: 10.1371/Journal.Ppat.1007071  0.398
2017 Estarás C, Hsu HT, Huang L, Jones KA. YAP repression of the WNT3 gene controls hESC differentiation along the cardiac mesoderm lineage. Genes & Development. PMID 29269485 DOI: 10.1101/Gad.307512.117  0.385
2017 Choi SH, Mahankali M, Lee SJ, Hull M, Petrassi HM, Chatterjee AK, Schultz PG, Jones KA, Shen W. Targeted disruption of Myc-Max oncoprotein complex by a small molecule. Acs Chemical Biology. PMID 28976731 DOI: 10.1021/Acschembio.7B00799  0.376
2015 Estarás C, Benner C, Jones KA. SMADs and YAP Compete to Control Elongation of β-Catenin:LEF-1-Recruited RNAPII during hESC Differentiation. Molecular Cell. 58: 780-93. PMID 25936800 DOI: 10.1016/J.Molcel.2015.04.001  0.396
2014 Chen Y, Zhang L, Estarás C, Choi SH, Moreno L, Karn J, Moresco JJ, Yates JR, Jones KA. A gene-specific role for the Ssu72 RNAPII CTD phosphatase in HIV-1 Tat transactivation. Genes & Development. 28: 2261-75. PMID 25319827 DOI: 10.1101/Gad.250449.114  0.46
2014 Jones KA. Changing the core of transcription. Elife. 3: e03575. PMID 25006167 DOI: 10.7554/Elife.03575  0.328
2013 Choi SH, Estarás C, Moresco JJ, Yates JR, Jones KA. α-Catenin interacts with APC to regulate β-catenin proteolysis and transcriptional repression of Wnt target genes. Genes & Development. 27: 2473-88. PMID 24240237 DOI: 10.1101/Gad.229062.113  0.346
2011 Jones KA. A SirT'N repression for Notch. Molecular Cell. 42: 559-60. PMID 21658598 DOI: 10.1016/J.Molcel.2011.05.017  0.356
2011 Chen Y, Zhang L, Jones KA. SKIP counteracts p53-mediated apoptosis via selective regulation of p21Cip1 mRNA splicing. Genes & Development. 25: 701-16. PMID 21460037 DOI: 10.1101/Gad.2002611  0.411
2009 Brès V, Yoshida T, Pickle L, Jones KA. SKIP interacts with c-Myc and Menin to promote HIV-1 Tat transactivation. Molecular Cell. 36: 75-87. PMID 19818711 DOI: 10.1016/J.Molcel.2009.08.015  0.39
2008 Yoh SM, Lucas JS, Jones KA. The Iws1:Spt6:CTD complex controls cotranscriptional mRNA biosynthesis and HYPB/Setd2-mediated histone H3K36 methylation. Genes & Development. 22: 3422-34. PMID 19141475 DOI: 10.1101/Gad.1720008  0.456
2008 Brès V, Yoh SM, Jones KA. The multi-tasking P-TEFb complex. Current Opinion in Cell Biology. 20: 334-40. PMID 18513937 DOI: 10.1016/J.Ceb.2008.04.008  0.455
2007 Jones KA. Transcription strategies in terminally differentiated cells: shaken to the core. Genes & Development. 21: 2113-7. PMID 17785521 DOI: 10.1101/Gad.1598007  0.448
2007 Yoh SM, Cho H, Pickle L, Evans RM, Jones KA. The Spt6 SH2 domain binds Ser2-P RNAPII to direct Iws1-dependent mRNA splicing and export. Genes & Development. 21: 160-74. PMID 17234882 DOI: 10.1101/Gad.1503107  0.45
2006 Wang S, Jones KA. CK2 controls the recruitment of Wnt regulators to target genes in vivo. Current Biology : Cb. 16: 2239-44. PMID 17113388 DOI: 10.1016/J.Cub.2006.09.034  0.423
2006 Willert K, Jones KA. Wnt signaling: is the party in the nucleus? Genes & Development. 20: 1394-404. PMID 16751178 DOI: 10.1101/Gad.1424006  0.403
2006 Sierra J, Yoshida T, Joazeiro CA, Jones KA. The APC tumor suppressor counteracts beta-catenin activation and H3K4 methylation at Wnt target genes. Genes & Development. 20: 586-600. PMID 16510874 DOI: 10.1101/Gad.1385806  0.416
2005 Brès V, Gomes N, Pickle L, Jones KA. A human splicing factor, SKIP, associates with P-TEFb and enhances transcription elongation by HIV-1 Tat. Genes & Development. 19: 1211-26. PMID 15905409 DOI: 10.1101/Gad.1291705  0.459
2004 Fryer CJ, White JB, Jones KA. Mastermind recruits CycC:CDK8 to phosphorylate the Notch ICD and coordinate activation with turnover. Molecular Cell. 16: 509-20. PMID 15546612 DOI: 10.1016/J.Molcel.2004.10.014  0.388
2003 Gomes N, Garber ME, Jones KA. Techniques to analyze the HIV-1 Tat and TAR RNA-dependent recruitment and activation of the cyclin T1: CDK9 (P-TEFb) transcription elongation factor. Methods in Enzymology. 371: 324-36. PMID 14712711 DOI: 10.1016/S0076-6879(03)71024-6  0.456
2002 Orlando V, Jones KA. Wild chromatin: regulation of eukaryotic genes in their natural chromatin context. Genes & Development. 16: 2039-44. PMID 12183359 DOI: 10.1101/Gad.1017402  0.419
2002 Fryer CJ, Lamar E, Turbachova I, Kintner C, Jones KA. Mastermind mediates chromatin-specific transcription and turnover of the Notch enhancer complex. Genes & Development. 16: 1397-411. PMID 12050117 DOI: 10.1101/Gad.991602  0.464
2001 Tutter AV, Fryer CJ, Jones KA. Chromatin-specific regulation of LEF-1-beta-catenin transcription activation and inhibition in vitro. Genes & Development. 15: 3342-54. PMID 11751639 DOI: 10.1101/Gad.946501  0.71
2000 Garber ME, Mayall TP, Suess EM, Meisenhelder J, Thompson NE, Jones KA. CDK9 autophosphorylation regulates high-affinity binding of the human immunodeficiency virus type 1 tat-P-TEFb complex to TAR RNA. Molecular and Cellular Biology. 20: 6958-69. PMID 10958691 DOI: 10.1128/Mcb.20.18.6958-6969.2000  0.433
2000 Zhang J, Tamilarasu N, Hwang S, Garber ME, Huq I, Jones KA, Rana TM. HIV-1 TAR RNA enhances the interaction between Tat and cyclin T1. The Journal of Biological Chemistry. 275: 34314-9. PMID 10944537 DOI: 10.1074/Jbc.M006804200  0.414
2000 Jones KA, Kadonaga JT. Exploring the transcription–chromatin interface Genes & Development. 14: 1992-1996. DOI: 10.1101/Gad.14.16.1992  0.459
1999 Tutter A, McAlpine GS, Jones KA. Mechanism of chromatin recognition and transcriptional regulation by LEF-1 and the Wnt/Wg-responsive LEF-1:beta-catenin complex. Cold Spring Harbor Symposia On Quantitative Biology. 64: 445-52. PMID 11232320 DOI: 10.1101/Sqb.1999.64.445  0.709
1999 Garber ME, Jones KA. HIV-1 Tat: coping with negative elongation factors. Current Opinion in Immunology. 11: 460-5. PMID 10448148 DOI: 10.1016/S0952-7915(99)80077-6  0.467
1999 Garber ME, Wei P, Caderas G, Jones KA. Protein and RNA affinity selection techniques using HIV-1 Tat. Methods in Enzymology. 306: 352-64. PMID 10432465 DOI: 10.1016/S0076-6879(99)06023-1  0.449
1998 Garber ME, Wei P, Jones KA. HIV-1 Tat interacts with cyclin T1 to direct the P-TEFb CTD kinase complex to TAR RNA. Cold Spring Harbor Symposia On Quantitative Biology. 63: 371-80. PMID 10384302 DOI: 10.1101/Sqb.1998.63.371  0.355
1998 Garber ME, Wei P, KewalRamani VN, Mayall TP, Herrmann CH, Rice AP, Littman DR, Jones KA. The interaction between HIV-1 Tat and human cyclin T1 requires zinc and a critical cysteine residue that is not conserved in the murine CycT1 protein. Genes & Development. 12: 3512-27. PMID 9832504 DOI: 10.1101/Gad.12.22.3512  0.466
1998 Herrmann CH, Carroll RG, Wei P, Jones KA, Rice AP. Tat-associated kinase, TAK, activity is regulated by distinct mechanisms in peripheral blood lymphocytes and promonocytic cell lines. Journal of Virology. 72: 9881-8. PMID 9811724 DOI: 10.1128/Jvi.72.12.9881-9888.1998  0.476
1998 Tutter A, Jones KA. Chemicals that footprint DNA: hitting HIV-1 in the minor groove. Proceedings of the National Academy of Sciences of the United States of America. 95: 12739-41. PMID 9788980 DOI: 10.1073/Pnas.95.22.12739  0.716
1998 Wei P, Garber ME, Fang SM, Fischer WH, Jones KA. A novel CDK9-associated C-type cyclin interacts directly with HIV-1 Tat and mediates its high-affinity, loop-specific binding to TAR RNA. Cell. 92: 451-62. PMID 9491887 DOI: 10.1016/S0092-8674(00)80939-3  0.451
1997 Sheridan PL, Mayall TP, Verdin E, Jones KA. Histone acetyltransferases regulate HIV-1 enhancer activity in vitro. Genes & Development. 11: 3327-40. PMID 9407026 DOI: 10.1101/Gad.11.24.3327  0.464
1997 Mayall TP, Sheridan PL, Montminy MR, Jones KA. Distinct roles for P-CREB and LEF-1 in TCR alpha enhancer assembly and activation on chromatin templates in vitro. Genes & Development. 11: 887-99. PMID 9106660 DOI: 10.1101/Gad.11.7.887  0.454
1996 Okamoto H, Sheline CT, Corden JL, Jones KA, Peterlin BM. Trans-activation by human immunodeficiency virus Tat protein requires the C-terminal domain of RNA polymerase II. Proceedings of the National Academy of Sciences of the United States of America. 93: 11575-9. PMID 8876177 DOI: 10.1073/Pnas.93.21.11575  0.447
1996 Pazin MJ, Sheridan PL, Cannon K, Cao Z, Keck JG, Kadonaga JT, Jones KA. NF-kappa B-mediated chromatin reconfiguration and transcriptional activation of the HIV-1 enhancer in vitro. Genes & Development. 10: 37-49. PMID 8557193 DOI: 10.1101/Gad.10.1.37  0.469
1995 Sheridan PL, Schorpp M, Voz ML, Jones KA. Cloning of an SNF2/SWI2-related protein that binds specifically to the SPH motifs of the SV40 enhancer and to the HIV-1 promoter. The Journal of Biological Chemistry. 270: 4575-87. PMID 7876228 DOI: 10.1074/Jbc.270.9.4575  0.416
1995 Sheridan PL, Sheline CT, Cannon K, Voz ML, Pazin MJ, Kadonaga JT, Jones KA. Activation of the HIV-1 enhancer by the LEF-1 HMG protein on nucleosome-assembled DNA in vitro. Genes & Development. 9: 2090-104. PMID 7657162 DOI: 10.1101/Gad.9.17.2090  0.475
1993 Jones KA. Tat and the HIV-1 promoter. Current Opinion in Cell Biology. 5: 461-8. PMID 8352964 DOI: 10.1016/0955-0674(93)90012-F  0.42
1993 Carlsson P, Waterman ML, Jones KA. The hLEF/TCF-1 alpha HMG protein contains a context-dependent transcriptional activation domain that induces the TCR alpha enhancer in T cells. Genes & Development. 7: 2418-30. PMID 8253387 DOI: 10.1101/Gad.7.12A.2418  0.646
1993 Sheridan PL, Sheline CT, Milocco LH, Jones KA. Tat and the HIV-1 promoter: A model for RNA-mediated regulation of transcription Seminars in Virology. 4: 69-80. DOI: 10.1016/1044-5773(93)80010-L  0.46
1991 Waterman ML, Fischer WH, Jones KA. A thymus-specific member of the HMG protein family regulates the human T cell receptor C alpha enhancer. Genes & Development. 5: 656-69. PMID 2010090 DOI: 10.1101/Gad.5.4.656  0.635
1991 Sheline CT, Milocco LH, Jones KA. Two distinct nuclear transcription factors recognize loop and bulge residues of the HIV-1 TAR RNA hairpin. Genes & Development. 5: 2508-20. PMID 1752441 DOI: 10.1101/Gad.5.12B.2508  0.447
1989 Jones KA. HIV trans-activation and transcription control mechanisms. The New Biologist. 1: 127-35. PMID 2562218  0.337
1989 Toohey MG, Jones KA. In vitro formation of short RNA polymerase II transcripts that terminate within the HIV-1 and HIV-2 promoter-proximal downstream regions. Genes & Development. 3: 265-82. PMID 2542124 DOI: 10.1101/Gad.3.3.265  0.42
1988 Jones KA, Luciw PA, Duchange N. Structural arrangements of transcription control domains within the 5'-untranslated leader regions of the HIV-1 and HIV-2 promoters. Genes & Development. 2: 1101-14. PMID 2847959 DOI: 10.1101/Gad.2.9.1101  0.458
1987 Jones KA, Kadonaga JT, Rosenfeld PJ, Kelly TJ, Tjian R. A cellular DNA-binding protein that activates eukaryotic transcription and DNA replication. Cell. 48: 79-89. PMID 3024847 DOI: 10.1016/0092-8674(87)90358-8  0.402
1987 Dinter H, Chiu R, Imagawa M, Karin M, Jones KA. In vitro activation of the HIV-1 enhancer in extracts from cells treated with a phorbol ester tumor promoter. The Embo Journal. 6: 4067-4071. DOI: 10.1002/J.1460-2075.1987.Tb02752.X  0.453
1986 Jones KA, Kadonaga JT, Luciw PA, Tjian R. Activation of the AIDS retrovirus promoter by the cellular transcription factor, Sp1. Science (New York, N.Y.). 232: 755-9. PMID 3008338 DOI: 10.1126/Science.3008338  0.464
1986 Kadonaga JT, Jones KA, Tjian R. Promoter-specific activation of RNA polymerase II transcription by Sp1 Trends in Biochemical Sciences. 11: 20-23. DOI: 10.1016/0968-0004(86)90226-4  0.423
1985 Jones KA, Tjian R. Sp1 binds to promoter sequences and activates herpes simplex virus 'immediate-early' gene transcription in vitro Nature. 317: 179-182. PMID 2993923 DOI: 10.1038/317179A0  0.446
1985 Jones KA, Yamamoto KR, Tjian R. Two distinct transcription factors bind to the HSV thymidine kinase promoter in vitro Cell. 42: 559-572. PMID 2992804 DOI: 10.1016/0092-8674(85)90113-8  0.463
1984 Jones KA, Tjian R. Essential contact residues within SV40 large T antigen binding sites I and II identified by alkylation-interference Cell. 36: 155-162. PMID 6319005 DOI: 10.1016/0092-8674(84)90084-9  0.314
1984 Jones K, Myers R, Tjian R. Mutational analysis of simian virus 40 large T antigen DNA binding sites. The Embo Journal. 3: 3247-3255. DOI: 10.1002/J.1460-2075.1984.Tb02286.X  0.319
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