| Year |
Citation |
Score |
| 2019 |
Burgoon LD, Angrish M, Garcia-Reyero N, Pollesch N, Zupanic A, Perkins E. Predicting the Probability that a Chemical Causes Steatosis Using Adverse Outcome Pathway Bayesian Networks (AOPBNs). Risk Analysis : An Official Publication of the Society For Risk Analysis. PMID 31721239 DOI: 10.1111/Risa.13423 |
0.681 |
|
| 2019 |
Gust KA, Kennedy AJ, Laird JG, Wilbanks MS, Barker ND, Guan X, Melby NL, Burgoon LD, Kjelland ME, Swannack TM. Different as Night and Day: Behavioral and Life History Responses to Varied Photoperiods in Daphnia magna. Molecular Ecology. PMID 31486145 DOI: 10.1111/Mec.15230 |
0.322 |
|
| 2018 |
Martens M, Verbruggen T, Nymark P, Grafström R, Burgoon LD, Aladjov H, Torres Andón F, Evelo CT, Willighagen EL. Introducing WikiPathways as a Data-Source to Support Adverse Outcome Pathways for Regulatory Risk Assessment of Chemicals and Nanomaterials. Frontiers in Genetics. 9: 661. PMID 30622555 DOI: 10.3389/Fgene.2018.00661 |
0.334 |
|
| 2016 |
Burgoon LD, Druwe IL, Painter K, Yost EE. Using In Vitro High-Throughput Screening Data for Predicting Benzo[k]Fluoranthene Human Health Hazards. Risk Analysis : An Official Publication of the Society For Risk Analysis. PMID 27088631 DOI: 10.1111/Risa.12613 |
0.31 |
|
| 2015 |
Perkins EJ, Antczak P, Burgoon L, Falciani F, Garcia-Reyero N, Gutsell S, Hodges G, Kienzler A, Knapen D, McBride M, Willett C. Adverse Outcome Pathways for Regulatory Applications: Examination of Four Case Studies With Different Degrees of Completeness and Scientific Confidence. Toxicological Sciences : An Official Journal of the Society of Toxicology. 148: 14-25. PMID 26500288 DOI: 10.1093/Toxsci/Kfv181 |
0.301 |
|
| 2015 |
Saini Y, Proper SP, Dornbos P, Greenwood KK, Kopec AK, Lynn SG, Grier E, Burgoon LD, Zacharewski TR, Thomas RS, Harkema JR, LaPres JJ. Loss of Hif-2α Rescues the Hif-1α Deletion Phenotype of Neonatal Respiratory Distress In Mice. Plos One. 10: e0139270. PMID 26422241 DOI: 10.1371/Journal.Pone.0139270 |
0.713 |
|
| 2015 |
DeBord DG, Burgoon L, Edwards SW, Haber LT, Kanitz MH, Kuempel E, Thomas RS, Yucesoy B. Systems Biology and Biomarkers of Early Effects for Occupational Exposure Limit Setting. Journal of Occupational and Environmental Hygiene. 0. PMID 26132979 DOI: 10.1080/15459624.2015.1060324 |
0.332 |
|
| 2013 |
Lalone CA, Villeneuve DL, Burgoon LD, Russom CL, Helgen HW, Berninger JP, Tietge JE, Severson MN, Cavallin JE, Ankley GT. Molecular target sequence similarity as a basis for species extrapolation to assess the ecological risk of chemicals with known modes of action. Aquatic Toxicology (Amsterdam, Netherlands). 144: 141-54. PMID 24177217 DOI: 10.1016/J.Aquatox.2013.09.004 |
0.309 |
|
| 2013 |
Kim S, Kiyosawa N, Burgoon LD, Chang CC, Zacharewski TR. PPARα-mediated responses in human adult liver stem cells: In vivo/in vitro and cross-species comparisons. The Journal of Steroid Biochemistry and Molecular Biology. 138: 236-47. PMID 23811191 DOI: 10.1016/J.Jsbmb.2013.06.004 |
0.786 |
|
| 2012 |
Ruckle ME, Burgoon LD, Lawrence LA, Sinkler CA, Larkin RM. Plastids are major regulators of light signaling in Arabidopsis. Plant Physiology. 159: 366-90. PMID 22383539 DOI: 10.1104/Pp.112.193599 |
0.405 |
|
| 2012 |
Bell SM, Burgoon LD, Last RL. MIPHENO: data normalization for high throughput metabolite analysis. Bmc Bioinformatics. 13: 10. PMID 22244038 DOI: 10.1186/1471-2105-13-10 |
0.317 |
|
| 2012 |
Villeneuve DL, Garcia-Reyero N, Martinović-Weigelt D, Li Z, Watanabe KH, Orlando EF, Lalone CA, Edwards SW, Burgoon LD, Denslow ND, Perkins EJ, Ankley GT. A graphical systems model and tissue-specific functional gene sets to aid transcriptomic analysis of chemical impacts on the female teleost reproductive axis. Mutation Research. 746: 151-62. PMID 22227403 DOI: 10.1016/J.Mrgentox.2011.12.016 |
0.473 |
|
| 2012 |
Forgacs AL, Kent MN, Makley MK, Mets B, DelRaso N, Jahns GL, Burgoon LD, Zacharewski TR, Reo NV. Comparative metabolomic and genomic analyses of TCDD-elicited metabolic disruption in mouse and rat liver. Toxicological Sciences : An Official Journal of the Society of Toxicology. 125: 41-55. PMID 21964420 DOI: 10.1093/Toxsci/Kfr262 |
0.81 |
|
| 2011 |
Kopec AK, D'Souza ML, Mets BD, Burgoon LD, Reese SE, Archer KJ, Potter D, Tashiro C, Sharratt B, Harkema JR, Zacharewski TR. Non-additive hepatic gene expression elicited by 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) and 2,2',4,4',5,5'-hexachlorobiphenyl (PCB153) co-treatment in C57BL/6 mice. Toxicology and Applied Pharmacology. 256: 154-67. PMID 21851831 DOI: 10.1016/J.Taap.2011.08.002 |
0.797 |
|
| 2011 |
Padilla-Carlin DJ, Schladweiler MC, Shannahan JH, Kodavanti UP, Nyska A, Burgoon LD, Gavett SH. Pulmonary inflammatory and fibrotic responses in Fischer 344 rats after intratracheal instillation exposure to Libby amphibole. Journal of Toxicology and Environmental Health. Part A. 74: 1111-32. PMID 21797767 DOI: 10.1080/15287394.2011.586940 |
0.335 |
|
| 2011 |
Dere E, Lee AW, Burgoon LD, Zacharewski TR. Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells. Bmc Genomics. 12: 193. PMID 21496263 DOI: 10.1186/1471-2164-12-193 |
0.788 |
|
| 2011 |
Dere E, Forgacs AL, Zacharewski TR, Burgoon LD. Genome-wide computational analysis of dioxin response element location and distribution in the human, mouse, and rat genomes. Chemical Research in Toxicology. 24: 494-504. PMID 21370876 DOI: 10.1021/Tx100328R |
0.762 |
|
| 2011 |
Copple BL, Bai S, Burgoon LD, Moon JO. Hypoxia-inducible factor-1α regulates the expression of genes in hypoxic hepatic stellate cells important for collagen deposition and angiogenesis. Liver International : Official Journal of the International Association For the Study of the Liver. 31: 230-44. PMID 20880076 DOI: 10.1111/J.1478-3231.2010.02347.X |
0.416 |
|
| 2010 |
Kopec AK, Burgoon LD, Ibrahim-Aibo D, Burg AR, Lee AW, Tashiro C, Potter D, Sharratt B, Harkema JR, Rowlands JC, Budinsky RA, Zacharewski TR. Automated dose-response analysis and comparative toxicogenomic evaluation of the hepatic effects elicited by TCDD, TCDF, and PCB126 in C57BL/6 mice. Toxicological Sciences : An Official Journal of the Society of Toxicology. 118: 286-97. PMID 20702594 DOI: 10.1093/Toxsci/Kfq236 |
0.819 |
|
| 2010 |
Fong CJ, Burgoon LD, Williams KJ, Jones AD, Forgacs AL, Zacharewski TR. Effects of tamoxifen and ethynylestradiol cotreatment on uterine gene expression in immature, ovariectomized mice. Journal of Molecular Endocrinology. 45: 161-73. PMID 20628019 DOI: 10.1677/Jme-09-0158 |
0.817 |
|
| 2010 |
Forgacs AL, Burgoon LD, Lynn SG, LaPres JJ, Zacharewski T. Effects of TCDD on the expression of nuclear encoded mitochondrial genes. Toxicology and Applied Pharmacology. 246: 58-65. PMID 20399798 DOI: 10.1016/J.Taap.2010.04.006 |
0.814 |
|
| 2010 |
Zou W, Roth RA, Younis HS, Burgoon LD, Ganey PE. Oxidative stress is important in the pathogenesis of liver injury induced by sulindac and lipopolysaccharide cotreatment. Toxicology. 272: 32-8. PMID 20371263 DOI: 10.1016/J.Tox.2010.03.015 |
0.33 |
|
| 2010 |
Lo R, Burgoon L, MacPherson L, Ahmed S, Matthews J. Estrogen receptor-dependent regulation of CYP2B6 in human breast cancer cells Biochimica Et Biophysica Acta - Gene Regulatory Mechanisms. 1799: 469-479. PMID 20079471 DOI: 10.1016/J.Bbagrm.2010.01.005 |
0.402 |
|
| 2010 |
Kopec AK, Burgoon LD, Ibrahim-Aibo D, Mets BD, Tashiro C, Potter D, Sharratt B, Harkema JR, Zacharewski TR. PCB153-elicited hepatic responses in the immature, ovariectomized C57BL/6 mice: comparative toxicogenomic effects of dioxin and non-dioxin-like ligands. Toxicology and Applied Pharmacology. 243: 359-71. PMID 20005886 DOI: 10.1016/J.Taap.2009.12.003 |
0.803 |
|
| 2009 |
Kim S, Dere E, Burgoon LD, Chang CC, Zacharewski TR. Comparative analysis of AhR-mediated TCDD-elicited gene expression in human liver adult stem cells. Toxicological Sciences : An Official Journal of the Society of Toxicology. 112: 229-44. PMID 19684285 DOI: 10.1093/Toxsci/Kfp189 |
0.837 |
|
| 2009 |
Burgoon LD, Ding Q, N'jai A, Dere E, Burg AR, Rowlands JC, Budinsky RA, Stebbins KE, Zacharewski TR. Automated dose-response analysis of the relative hepatic gene expression potency of TCDF in C57BL/6 mice. Toxicological Sciences : An Official Journal of the Society of Toxicology. 112: 221-8. PMID 19675144 DOI: 10.1093/Toxsci/Kfp180 |
0.802 |
|
| 2009 |
Phillips JM, Burgoon LD, Goodman JI. The constitutive active/androstane receptor facilitates unique phenobarbital-induced expression changes of genes involved in key pathways in precancerous liver and liver tumors. Toxicological Sciences : An Official Journal of the Society of Toxicology. 110: 319-33. PMID 19482888 DOI: 10.1093/Toxsci/Kfp108 |
0.456 |
|
| 2009 |
Kwekel JC, Forgacs AL, Burgoon LD, Williams KJ, Zacharewski TR. Tamoxifen-elicited uterotrophy: cross-species and cross-ligand analysis of the gene expression program. Bmc Medical Genomics. 2: 19. PMID 19400957 DOI: 10.1186/1755-8794-2-19 |
0.838 |
|
| 2009 |
Phillips JM, Burgoon LD, Goodman JI. Phenobarbital elicits unique, early changes in the expression of hepatic genes that affect critical pathways in tumor-prone B6C3F1 mice. Toxicological Sciences : An Official Journal of the Society of Toxicology. 109: 193-205. PMID 19270015 DOI: 10.1093/Toxsci/Kfp050 |
0.516 |
|
| 2009 |
Jahns GL, Kent MN, Burgoon LD, DelRaso N, Zacharewski TR, Reo NV. Development of analytical methods for NMR spectra and application to a 13C toxicology study Metabolomics. 5: 253-262. DOI: 10.1007/S11306-008-0148-9 |
0.6 |
|
| 2008 |
Kiyosawa N, Kwekel JC, Burgoon LD, Dere E, Williams KJ, Tashiro C, Chittim B, Zacharewski TR. Species-specific regulation of PXR/CAR/ER-target genes in the mouse and rat liver elicited by o, p'-DDT. Bmc Genomics. 9: 487. PMID 18925944 DOI: 10.1186/1471-2164-9-487 |
0.779 |
|
| 2008 |
Frericks M, Burgoon LD, Zacharewski TR, Esser C. Promoter analysis of TCDD-inducible genes in a thymic epithelial cell line indicates the potential for cell-specific transcription factor crosstalk in the AhR response. Toxicology and Applied Pharmacology. 232: 268-79. PMID 18691609 DOI: 10.1016/J.Taap.2008.07.009 |
0.665 |
|
| 2008 |
Burgoon LD, Zacharewski TR. Bioinformatics: databasing and gene annotation. Methods in Molecular Biology (Clifton, N.J.). 460: 145-57. PMID 18449486 DOI: 10.1007/978-1-60327-048-9_7 |
0.655 |
|
| 2008 |
Burgoon LD, Zacharewski TR. Automated quantitative dose-response modeling and point of departure determination for large toxicogenomic and high-throughput screening data sets. Toxicological Sciences : An Official Journal of the Society of Toxicology. 104: 412-8. PMID 18441342 DOI: 10.1093/Toxsci/Kfn083 |
0.68 |
|
| 2008 |
N'Jai A, Boverhof DR, Dere E, Burgoon LD, Tan YS, Rowlands JC, Budinsky RA, Stebbins KE, Zacharewski TR. Comparative temporal toxicogenomic analysis of TCDD- and TCDF-mediated hepatic effects in immature female C57BL/6 mice. Toxicological Sciences : An Official Journal of the Society of Toxicology. 103: 285-97. PMID 18343893 DOI: 10.1093/Toxsci/Kfn053 |
0.843 |
|
| 2008 |
Kopec AK, Boverhof DR, Burgoon LD, Ibrahim-Aibo D, Harkema JR, Tashiro C, Chittim B, Zacharewski TR. Comparative toxicogenomic examination of the hepatic effects of PCB126 and TCDD in immature, ovariectomized C57BL/6 mice. Toxicological Sciences : An Official Journal of the Society of Toxicology. 102: 61-75. PMID 18042819 DOI: 10.1093/Toxsci/Kfm289 |
0.824 |
|
| 2008 |
Kiyosawa N, Kwekel JC, Burgoon LD, Williams KJ, Tashiro C, Chittim B, Zacharewski TR. o,p'-DDT elicits PXR/CAR-, not ER-, mediated responses in the immature ovariectomized rat liver. Toxicological Sciences : An Official Journal of the Society of Toxicology. 101: 350-63. PMID 17984292 DOI: 10.1093/Toxsci/Kfm275 |
0.701 |
|
| 2008 |
Boverhof DR, Burgoon LD, Williams KJ, Zacharewski TR. Inhibition of estrogen-mediated uterine gene expression responses by dioxin. Molecular Pharmacology. 73: 82-93. PMID 17942748 DOI: 10.1124/Mol.107.040451 |
0.82 |
|
| 2008 |
Kiyosawa N, Kwekel JC, Burgoon LD, Williams KJ, Tashiro C, Chittim B, Zacharewski TR. Erratum: o,p′-DDT elicits PXR/CAR-, not ER-, mediated responses in the immature ovariectomized rat liver (Toxicological Sciences (2008) vol. 101 (350-363) 10.1093/toxsci/kfm275) Toxicological Sciences. 105. DOI: 10.1093/Toxsci/Kfn143 |
0.594 |
|
| 2007 |
Fong CJ, Burgoon LD, Williams KJ, Forgacs AL, Zacharewski TR. Comparative temporal and dose-dependent morphological and transcriptional uterine effects elicited by tamoxifen and ethynylestradiol in immature, ovariectomized mice. Bmc Genomics. 8: 151. PMID 17555576 DOI: 10.1186/1471-2164-8-151 |
0.829 |
|
| 2007 |
Burgoon LD. Clearing the standards landscape: the semantics of terminology and their impact on toxicogenomics. Toxicological Sciences : An Official Journal of the Society of Toxicology. 99: 403-12. PMID 17483496 DOI: 10.1093/Toxsci/Kfm108 |
0.321 |
|
| 2007 |
Fostel JM, Burgoon L, Zwickl C, Lord P, Corton JC, Bushel PR, Cunningham M, Fan L, Edwards SW, Hester S, Stevens J, Tong W, Waters M, Yang C, Tennant R. Toward a checklist for exchange and interpretation of data from a toxicology study. Toxicological Sciences : An Official Journal of the Society of Toxicology. 99: 26-34. PMID 17442663 DOI: 10.1093/Toxsci/Kfm090 |
0.329 |
|
| 2007 |
Burgoon LD, Zacharewski TR. dbZach toxicogenomic information management system. Pharmacogenomics. 8: 287-91. PMID 17324117 DOI: 10.2217/14622416.8.3.287 |
0.579 |
|
| 2007 |
Frericks M, Burgoon LD, Zacharewski T, Esser C. Transcription factor crosstalk controls the transcriptional response to AhR over activation by TCDD in thymic epithelial cells Toxicology Letters. 172: S144-S145. DOI: 10.1016/J.Toxlet.2007.05.374 |
0.591 |
|
| 2006 |
Lee K A, Burgoon LD, Lamb L, Dere E, Zacharewski TR, Hogenesch JB, LaPres JJ. Identification and characterization of genes susceptible to transcriptional cross-talk between the hypoxia and dioxin signaling cascades. Chemical Research in Toxicology. 19: 1284-93. PMID 17040097 DOI: 10.1021/Tx060068D |
0.767 |
|
| 2006 |
Boverhof DR, Burgoon LD, Tashiro C, Sharratt B, Chittim B, Harkema JR, Mendrick DL, Zacharewski TR. Comparative toxicogenomic analysis of the hepatotoxic effects of TCDD in Sprague Dawley rats and C57BL/6 mice. Toxicological Sciences : An Official Journal of the Society of Toxicology. 94: 398-416. PMID 16960034 DOI: 10.1093/Toxsci/Kfl100 |
0.827 |
|
| 2006 |
Dere E, Boverhof DR, Burgoon LD, Zacharewski TR. In vivo-in vitro toxicogenomic comparison of TCDD-elicited gene expression in Hepa1c1c7 mouse hepatoma cells and C57BL/6 hepatic tissue. Bmc Genomics. 7: 80. PMID 16611356 DOI: 10.1186/1471-2164-7-80 |
0.83 |
|
| 2006 |
Fong CJ, Burgoon LD, Zacharewski TR. Effects of culture conditions on estrogen-mediated hepatic in vitro gene expression and correlation to in vivo responses. Toxicology and Applied Pharmacology. 215: 37-50. PMID 16519913 DOI: 10.1016/J.Taap.2006.01.014 |
0.803 |
|
| 2006 |
Boverhof DR, Kwekel JC, Humes DG, Burgoon LD, Zacharewski TR. Dioxin induces an estrogen-like, estrogen receptor-dependent gene expression response in the murine uterus. Molecular Pharmacology. 69: 1599-606. PMID 16467188 DOI: 10.1124/Mol.105.019638 |
0.816 |
|
| 2006 |
Burgoon LD, Boutros PC, Dere E, Zacharewski TR. dbZach: A MIAME-compliant toxicogenomic supportive relational database. Toxicological Sciences : An Official Journal of the Society of Toxicology. 90: 558-68. PMID 16403854 DOI: 10.1093/Toxsci/Kfj097 |
0.737 |
|
| 2006 |
Lee K, Burgoon LD, Lamb L, Dere E, Zacharewski TR, Hogenesch JB, LaPres JJ. Identification and Characterization of Genes Susceptible to Transcriptional Cross-Talk between the Hypoxia and Dioxin Signaling Cascades Volume 19, Number 10, October, 2006, pp 1284−1293 Chemical Research in Toxicology. 19: 1702-1702. DOI: 10.1021/Tx600294R |
0.724 |
|
| 2005 |
Burgoon LD, Eckel-Passow JE, Gennings C, Boverhof DR, Burt JW, Fong CJ, Zacharewski TR. Protocols for the assurance of microarray data quality and process control. Nucleic Acids Research. 33: e172. PMID 16272462 DOI: 10.1093/Nar/Gni167 |
0.774 |
|
| 2005 |
Kwekel JC, Burgoon LD, Burt JW, Harkema JR, Zacharewski TR. A cross-species analysis of the rodent uterotrophic program: elucidation of conserved responses and targets of estrogen signaling. Physiological Genomics. 23: 327-42. PMID 16174780 DOI: 10.1152/Physiolgenomics.00175.2005 |
0.697 |
|
| 2005 |
Fong CJ, Burgoon LD, Zacharewski TR. Comparative microarray analysis of basal gene expression in mouse Hepa-1c1c7 wild-type and mutant cell lines. Toxicological Sciences : An Official Journal of the Society of Toxicology. 86: 342-53. PMID 15888666 DOI: 10.1093/Toxsci/Kfi194 |
0.744 |
|
| 2005 |
Boverhof DR, Burgoon LD, Tashiro C, Chittim B, Harkema JR, Jump DB, Zacharewski TR. Temporal and dose-dependent hepatic gene expression patterns in mice provide new insights into TCDD-Mediated hepatotoxicity. Toxicological Sciences : An Official Journal of the Society of Toxicology. 85: 1048-63. PMID 15800033 DOI: 10.1093/Toxsci/Kfi162 |
0.823 |
|
| 2005 |
Eckel JE, Gennings C, Therneau TM, Burgoon LD, Boverhof DR, Zacharewski TR. Normalization of two-channel microarray experiments: a semiparametric approach. Bioinformatics (Oxford, England). 21: 1078-83. PMID 15513988 DOI: 10.1093/Bioinformatics/Bti105 |
0.741 |
|
| 2004 |
Eckel JE, Gennings C, Chinchilli VM, Burgoon LD, Zacharewski TR. Empirical bayes gene screening tool for time-course or dose-response microarray data. Journal of Biopharmaceutical Statistics. 14: 647-70. PMID 15468757 DOI: 10.1081/Bip-200025656 |
0.646 |
|
| 2004 |
Sun YV, Boverhof DR, Burgoon LD, Fielden MR, Zacharewski TR. Comparative analysis of dioxin response elements in human, mouse and rat genomic sequences. Nucleic Acids Research. 32: 4512-23. PMID 15328365 DOI: 10.1093/Nar/Gkh782 |
0.814 |
|
| 2004 |
Luyendyk JP, Mattes WB, Burgoon LD, Zacharewski TR, Maddox JF, Cosma GN, Ganey PE, Roth RA. Gene expression analysis points to hemostasis in livers of rats cotreated with lipopolysaccharide and ranitidine. Toxicological Sciences : An Official Journal of the Society of Toxicology. 80: 203-13. PMID 15084757 DOI: 10.1093/Toxsci/Kfh146 |
0.635 |
|
| 2004 |
Boverhof DR, Fertuck KC, Burgoon LD, Eckel JE, Gennings C, Zacharewski TR. Temporal- and dose-dependent hepatic gene expression changes in immature ovariectomized mice following exposure to ethynyl estradiol. Carcinogenesis. 25: 1277-91. PMID 14976129 DOI: 10.1093/Carcin/Bgh114 |
0.832 |
|
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