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Danielle Tullman-Ercek - Publications

Affiliations: 
2009-2016 Bioengineering University of California, Berkeley, Berkeley, CA, United States 
 2016- Chemical and Biological Engineering Northwestern University, Evanston, IL 
Area:
Biomedical Engineering, Biochemistry, General Biology
Website:
http://www.mccormick.northwestern.edu/research-faculty/directory/profiles/tullman-ercek-danielle.html
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50 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Waltmann C, Kennedy NW, Mills CE, Roth EW, Ikonomova SP, Tullman-Ercek D, Olvera de la Cruz M. Kinetic Growth of Multicomponent Microcompartment Shells. Acs Nano. 17: 15751-15762. PMID 37552700 DOI: 10.1021/acsnano.3c03353  0.371
2023 Liang JM, Burdette LA, Wong HT, Tullman-Ercek D. Construction of a constitutively active type III secretion system for heterologous protein secretion. Applied Microbiology and Biotechnology. PMID 36786917 DOI: 10.1007/s00253-023-12411-9  0.423
2022 Mills CE, Waltmann C, Archer AG, Kennedy NW, Abrahamson CH, Jackson AD, Roth EW, Shirman S, Jewett MC, Mangan NM, Olvera de la Cruz M, Tullman-Ercek D. Vertex protein PduN tunes encapsulated pathway performance by dictating bacterial metabolosome morphology. Nature Communications. 13: 3746. PMID 35768404 DOI: 10.1038/s41467-022-31279-3  0.323
2022 Kennedy NW, Mills CE, Abrahamson CH, Archer AG, Shirman S, Jewett MC, Mangan NM, Tullman-Ercek D. Linking the Salmonella enterica 1,2-Propanediol Utilization Bacterial Microcompartment Shell to the Enzymatic Core via the Shell Protein PduB. Journal of Bacteriology. e0057621. PMID 35575582 DOI: 10.1128/jb.00576-21  0.329
2021 Li Y, Kennedy NW, Li S, Mills CE, Tullman-Ercek D, Olvera de la Cruz M. Computational and Experimental Approaches to Controlling Bacterial Microcompartment Assembly. Acs Central Science. 7: 658-670. PMID 34056096 DOI: 10.1021/acscentsci.0c01699  0.318
2021 Burdette LA, Wong HT, Tullman-Ercek D. An optimized growth medium for increased recombinant protein secretion titer via the type III secretion system. Microbial Cell Factories. 20: 44. PMID 33588857 DOI: 10.1186/s12934-021-01536-z  0.441
2020 Kennedy NW, Ikonomova SP, Slininger Lee M, Raeder HW, Tullman-Ercek D. Self-assembling shell proteins PduA and PduJ have essential and redundant roles in bacterial microcompartment assembly. Journal of Molecular Biology. PMID 33227310 DOI: 10.1016/j.jmb.2020.11.020  0.34
2020 Robinson SA, Hartman EC, Ikwuagwu BC, Francis MB, Tullman-Ercek D. Engineering a Virus-like Particle to Display Peptide Insertions Using an Apparent Fitness Landscape. Biomacromolecules. PMID 32880435 DOI: 10.1021/Acs.Biomac.0C00987  0.427
2020 Kennedy NW, Hershewe JM, Nichols TM, Roth EW, Wilke CD, Mills CE, Jewett MC, Tullman-Ercek D. Apparent size and morphology of bacterial microcompartments varies with technique. Plos One. 15: e0226395. PMID 32150579 DOI: 10.1371/Journal.Pone.0226395  0.321
2020 Nichols TM, Kennedy NW, Tullman-Ercek D. A genomic integration platform for heterologous cargo encapsulation in 1,2-propanediol utilization bacterial microcompartments Biochemical Engineering Journal. 156: 107496. DOI: 10.1016/J.Bej.2020.107496  0.403
2019 Nichols TM, Kennedy NW, Tullman-Ercek D. Cargo encapsulation in bacterial microcompartments: Methods and analysis. Methods in Enzymology. 617: 155-186. PMID 30784401 DOI: 10.1016/Bs.Mie.2018.12.009  0.365
2019 Brauer DD, Hartman EC, Bader DLV, Merz ZN, Tullman-Ercek D, Francis MB. Systematic Engineering of a Protein Nanocage for High-yield, Site-specific Modification. Journal of the American Chemical Society. PMID 30730722 DOI: 10.1021/Jacs.8B10734  0.463
2019 Hartman EC, Tullman-Ercek D. Learning from protein fitness landscapes: a review of mutability, epistasis, and evolution Current Opinion in Systems Biology. 14: 25-31. DOI: 10.1016/J.Coisb.2019.02.006  0.447
2018 Burdette LA, Leach SA, Wong HT, Tullman-Ercek D. Developing Gram-negative bacteria for the secretion of heterologous proteins. Microbial Cell Factories. 17: 196. PMID 30572895 DOI: 10.1186/S12934-018-1041-5  0.498
2018 Hartman EC, Lobba MJ, Favor AH, Robinson SA, Francis MB, Tullman-Ercek D. Experimental evaluation of coevolution in a self-assembling particle. Biochemistry. PMID 30418759 DOI: 10.1021/Acs.Biochem.8B00948  0.323
2018 Glasgow AA, Tullman-Ercek D. Type III Secretion Filaments as Templates for Metallic Nanostructure Synthesis. Methods in Molecular Biology (Clifton, N.J.). 1798: 155-171. PMID 29868958 DOI: 10.1007/978-1-4939-7893-9_12  0.35
2018 Jakobson CM, Tullman-Ercek D, Mangan NM. Spatially organizing biochemistry: choosing a strategy to translate synthetic biology to the factory. Scientific Reports. 8: 8196. PMID 29844460 DOI: 10.1038/S41598-018-26399-0  0.305
2018 Kang MK, Tullman-Ercek D. Engineering expression and function of membrane proteins. Methods (San Diego, Calif.). PMID 29702227 DOI: 10.1016/J.Ymeth.2018.04.014  0.48
2018 Hartman EC, Jakobson CM, Favor AH, Lobba MJ, Álvarez-Benedicto E, Francis MB, Tullman-Ercek D. Quantitative characterization of all single amino acid variants of a viral capsid-based drug delivery vehicle. Nature Communications. 9: 1385. PMID 29643335 DOI: 10.1038/S41467-018-03783-Y  0.405
2017 Slininger Lee MF, Jakobson CM, Tullman-Ercek D. Evidence for Improved Encapsulated Pathway Behavior in a Bacterial Microcompartment through Shell Protein Engineering. Acs Synthetic Biology. 6: 1880-1891. PMID 28585808 DOI: 10.1021/Acssynbio.7B00042  0.472
2017 Glasgow AA, Wong HT, Tullman-Ercek D. A Secretion-Amplification Role for Salmonella enterica Translocon Protein SipD. Acs Synthetic Biology. 6: 1006-1015. PMID 28301138 DOI: 10.1021/Acssynbio.6B00335  0.611
2017 Jakobson CM, Slininger Lee MF, Tullman-Ercek D. De novo design of signal sequences to localize cargo to the 1,2-propanediol utilization microcompartment. Protein Science : a Publication of the Protein Society. 26: 1086-1092. PMID 28241402 DOI: 10.1002/Pro.3144  0.353
2017 Metcalf KJ, Tullman-Ercek D. Use of Transcriptional Control to Increase Secretion of Heterologous Proteins in T3S Systems. Methods in Molecular Biology (Clifton, N.J.). 1531: 71-79. PMID 27837482 DOI: 10.1007/978-1-4939-6649-3_6  0.571
2017 Slininger Lee M, Tullman-Ercek D. Practical considerations for the encapsulation of multi-enzyme cargos within the bacterial microcompartment for metabolic engineering Current Opinion in Systems Biology. 5: 16-22. DOI: 10.1016/J.Coisb.2017.05.017  0.395
2016 Metcalf KJ, Bevington JL, Rosales SL, Burdette LA, Valdivia E, Tullman-Ercek D. Proteins adopt functionally active conformations after type III secretion. Microbial Cell Factories. 15: 213. PMID 28010734 DOI: 10.1186/S12934-016-0606-4  0.55
2016 Jakobson CM, Chen Y, Slininger MF, Valdivia E, Kim EY, Tullman-Ercek D. Tuning the Catalytic Activity of Subcellular Nanoreactors. Journal of Molecular Biology. 428: 2989-96. PMID 27427532 DOI: 10.1016/J.Jmb.2016.07.006  0.466
2016 Jakobson CM, Tullman-Ercek D. Dumpster Diving in the Gut: Bacterial Microcompartments as Part of a Host-Associated Lifestyle. Plos Pathogens. 12: e1005558. PMID 27171216 DOI: 10.1371/Journal.Ppat.1005558  0.309
2016 Azam A, Tullman-Ercek D. Type-III secretion filaments as scaffolds for inorganic nanostructures. Journal of the Royal Society, Interface. 13: 20150938. PMID 26763334 DOI: 10.1098/Rsif.2015.0938  0.415
2016 Boyarskiy S, Davis López S, Kong N, Tullman-Ercek D. Transcriptional feedback regulation of efflux protein expression for increased tolerance to and production of n-butanol. Metabolic Engineering. 33: 130-137. PMID 26656942 DOI: 10.1016/J.Ymben.2015.11.005  0.452
2016 Azam A, Li C, Metcalf KJ, Tullman-Ercek D. Type III secretion as a generalizable strategy for the production of full-length biopolymer-forming proteins. Biotechnology and Bioengineering. 113: 2313-20. PMID 25993982 DOI: 10.1002/Bit.25656  0.596
2015 Jakobson CM, Kim EY, Slininger MF, Chien A, Tullman-Ercek D. Localization of proteins to the 1,2-propanediol utilization microcompartment by non-native signal sequences is mediated by a common hydrophobic motif. The Journal of Biological Chemistry. 290: 24519-33. PMID 26283792 DOI: 10.1074/Jbc.M115.651919  0.456
2015 Glasgow JE, Asensio MA, Jakobson CM, Francis MB, Tullman-Ercek D. Influence of Electrostatics on Small Molecule Flux through a Protein Nanoreactor. Acs Synthetic Biology. 4: 1011-9. PMID 25893987 DOI: 10.1021/Acssynbio.5B00037  0.444
2014 Kim EY, Jakobson CM, Tullman-Ercek D. Engineering transcriptional regulation to control Pdu microcompartment formation. Plos One. 9: e113814. PMID 25427074 DOI: 10.1371/Journal.Pone.0113814  0.428
2014 Kim EY, Slininger MF, Tullman-Ercek D. The effects of time, temperature, and pH on the stability of PDU bacterial microcompartments. Protein Science : a Publication of the Protein Society. 23: 1434-41. PMID 25053115 DOI: 10.1002/Pro.2527  0.354
2014 Metcalf KJ, Finnerty C, Azam A, Valdivia E, Tullman-Ercek D. Using transcriptional control to increase titers of secreted heterologous proteins by the type III secretion system. Applied and Environmental Microbiology. 80: 5927-34. PMID 25038096 DOI: 10.1128/Aem.01330-14  0.556
2014 Glasgow J, Tullman-Ercek D. Production and applications of engineered viral capsids. Applied Microbiology and Biotechnology. 98: 5847-58. PMID 24816622 DOI: 10.1007/S00253-014-5787-3  0.315
2014 Kim EY, Tullman-Ercek D. A rapid flow cytometry assay for the relative quantification of protein encapsulation into bacterial microcompartments. Biotechnology Journal. 9: 348-54. PMID 24323373 DOI: 10.1002/Biot.201300391  0.542
2014 Fisher MA, Boyarskiy S, Yamada MR, Kong N, Bauer S, Tullman-Ercek D. Enhancing tolerance to short-chain alcohols by engineering the Escherichia coli AcrB efflux pump to secrete the non-native substrate n-butanol. Acs Synthetic Biology. 3: 30-40. PMID 23991711 DOI: 10.1021/Sb400065Q  0.352
2013 Tullman-Ercek D. An assay for the bacterial sweet spot. Biotechnology Journal. 8: 1377-8. PMID 24124082 DOI: 10.1002/Biot.201300319  0.429
2013 Reyes-Ortiz V, Heins RA, Cheng G, Kim EY, Vernon BC, Elandt RB, Adams PD, Sale KL, Hadi MZ, Simmons BA, Kent MS, Tullman-Ercek D. Addition of a carbohydrate-binding module enhances cellulase penetration into cellulose substrates. Biotechnology For Biofuels. 6: 93. PMID 23819686 DOI: 10.1186/1754-6834-6-93  0.722
2013 Fisher MA, Tullman-Ercek D. Change, exchange, and rearrange: protein engineering for the biotechnological production of fuels, pharmaceuticals, and other chemicals. Current Opinion in Biotechnology. 24: 1010-6. PMID 23522655 DOI: 10.1016/J.Copbio.2013.02.027  0.368
2013 Kim EY, Tullman-Ercek D. Engineering nanoscale protein compartments for synthetic organelles. Current Opinion in Biotechnology. 24: 627-32. PMID 23273660 DOI: 10.1016/J.Copbio.2012.11.012  0.48
2012 Glasgow JE, Capehart SL, Francis MB, Tullman-Ercek D. Osmolyte-mediated encapsulation of proteins inside MS2 viral capsids. Acs Nano. 6: 8658-64. PMID 22953696 DOI: 10.1021/Nn302183H  0.457
2011 Bokinsky G, Peralta-Yahya PP, George A, Holmes BM, Steen EJ, Dietrich J, Lee TS, Tullman-Ercek D, Voigt CA, Simmons BA, Keasling JD. Synthesis of three advanced biofuels from ionic liquid-pretreated switchgrass using engineered Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 108: 19949-54. PMID 22123987 DOI: 10.1073/Pnas.1106958108  0.541
2010 Lee YF, Hsieh HY, Tullman-Ercek D, Chiang TK, Turner RJ, Lin SC. Enhanced translocation of recombinant proteins via the Tat pathway with chaperones in Escherichia coli Journal of the Taiwan Institute of Chemical Engineers. 41: 540-546. DOI: 10.1016/J.Jtice.2010.01.004  0.567
2009 Widmaier DM, Tullman-Ercek D, Mirsky EA, Hill R, Govindarajan S, Minshull J, Voigt CA. Engineering the Salmonella type III secretion system to export spider silk monomers. Molecular Systems Biology. 5: 309. PMID 19756048 DOI: 10.1038/Msb.2009.62  0.564
2008 Fisher AC, Kim JY, Perez-Rodriguez R, Tullman-Ercek D, Fish WR, Henderson LA, DeLisa MP. Exploration of twin-arginine translocation for expression and purification of correctly folded proteins in Escherichia coli. Microbial Biotechnology. 1: 403-15. PMID 21261860 DOI: 10.1111/J.1751-7915.2008.00041.X  0.742
2008 Temme K, Salis H, Tullman-Ercek D, Levskaya A, Hong SH, Voigt CA. Induction and relaxation dynamics of the regulatory network controlling the type III secretion system encoded within Salmonella pathogenicity island 1. Journal of Molecular Biology. 377: 47-61. PMID 18242639 DOI: 10.1016/J.Jmb.2007.12.044  0.671
2007 Tullman-Ercek D, DeLisa MP, Kawarasaki Y, Iranpour P, Ribnicky B, Palmer T, Georgiou G. Export pathway selectivity of Escherichia coli twin arginine translocation signal peptides. The Journal of Biological Chemistry. 282: 8309-16. PMID 17218314 DOI: 10.1074/Jbc.M610507200  0.696
2006 Lee PA, Tullman-Ercek D, Georgiou G. The bacterial twin-arginine translocation pathway. Annual Review of Microbiology. 60: 373-95. PMID 16756481 DOI: 10.1146/Annurev.Micro.60.080805.142212  0.664
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