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Jung-Hsin Lin - Publications

Affiliations: 
Academia Sinica, Taiwan, Taipei City, Taiwan 
Area:
computational drug design, biophysics, mechanobiology
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25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Joshi DC, Gosse C, Huang SY, Lin JH. A Curvilinear-Path Umbrella Sampling Approach to Characterizing the Interactions Between Rapamycin and Three FKBP12 Variants. Frontiers in Molecular Biosciences. 9: 879000. PMID 35874613 DOI: 10.3389/fmolb.2022.879000  0.721
2020 Joshi DC, Lin J. Investigating the Role of Interfacial Waters in Protein-Protein Recognition Mechanism Biophysical Journal. 118: 503a. DOI: 10.1016/J.Bpj.2019.11.2773  0.709
2019 Joshi DC, Lin JH. Delineating Protein-Protein Curvilinear Dissociation Pathways and Energetics with Naïve Multiple-Walker Umbrella Sampling Simulations. Journal of Computational Chemistry. PMID 30950525 DOI: 10.1002/Jcc.25821  0.737
2019 Joshi DC, Lin J. Multiple-Walker Curvilinear-Path Umbrella Sampling Simulations: to Trace Protein-Protein Dissociation Trajectories and Compute Potential of Mean Force Biophysical Journal. 116: 47a. DOI: 10.1016/J.Bpj.2018.11.295  0.721
2017 Chen YH, Lin JH. Can ligands of different functional types induce distinct dynamics in G protein-coupled receptors? Current Topics in Medicinal Chemistry. PMID 28355999 DOI: 10.2174/1568026617666170328100359  0.343
2016 Huang N, Lin J. Coordinated Dynamics Orchestrating the DNA Re-Ligation by De-Poisoned Topoisomerase II Biophysical Journal. 110: 361a-362a. DOI: 10.1016/J.Bpj.2015.11.1949  0.315
2014 Huang NL, Lin JH. Drug-induced conformational population shifts in topoisomerase-DNA ternary complexes. Molecules (Basel, Switzerland). 19: 7415-28. PMID 24905608 DOI: 10.3390/Molecules19067415  0.34
2013 Wang JC, Lin JH. Scoring functions for prediction of protein-ligand interactions. Current Pharmaceutical Design. 19: 2174-82. PMID 23016847 DOI: 10.2174/1381612811319120005  0.402
2012 Lin JH. Target prediction of small molecules with information of key molecular interactions. Current Topics in Medicinal Chemistry. 12: 1903-10. PMID 23116470 DOI: 10.2174/156802612804547362  0.345
2012 Wang JC, Chu PY, Chen CM, Lin JH. idTarget: a web server for identifying protein targets of small chemical molecules with robust scoring functions and a divide-and-conquer docking approach. Nucleic Acids Research. 40: W393-9. PMID 22649057 DOI: 10.1093/Nar/Gks496  0.356
2012 Lin J. Mechanical Transmission Between the γ-Subunit of F1 and the C-Ring of Membrane-Bound FO of ATP Synthase: A Molecular Dynamics Study Biophysical Journal. 102: 712a. DOI: 10.1016/J.Bpj.2011.11.3861  0.349
2011 Wang JC, Lin JH, Chen CM, Perryman AL, Olson AJ. Robust scoring functions for protein-ligand interactions with quantum chemical charge models. Journal of Chemical Information and Modeling. 51: 2528-37. PMID 21932857 DOI: 10.1021/Ci200220V  0.315
2011 Lin JH. Accommodating protein flexibility for structure-based drug design. Current Topics in Medicinal Chemistry. 11: 171-8. PMID 20939792 DOI: 10.2174/156802611794863580  0.434
2009 Lee PH, Kuo KL, Chu PY, Liu EM, Lin JH. SLITHER: a web server for generating contiguous conformations of substrate molecules entering into deep active sites of proteins or migrating through channels in membrane transporters. Nucleic Acids Research. 37: W559-64. PMID 19433508 DOI: 10.1093/Nar/Gkp359  0.371
2007 Amaro RE, Minh DD, Cheng LS, Lindstrom WM, Olson AJ, Lin JH, Li WW, McCammon JA. Remarkable loop flexibility in avian influenza N1 and its implications for antiviral drug design. Journal of the American Chemical Society. 129: 7764-5. PMID 17539643 DOI: 10.1021/Ja0723535  0.446
2006 Perryman AL, Lin JH, Andrew McCammon J. Optimization and computational evaluation of a series of potential active site inhibitors of the V82F/I84V drug-resistant mutant of HIV-1 protease: an application of the relaxed complex method of structure-based drug design. Chemical Biology & Drug Design. 67: 336-45. PMID 16784458 DOI: 10.1111/J.1747-0285.2006.00382.X  0.34
2006 Perryman AL, Lin JH, McCammon JA. Restrained molecular dynamics simulations of HIV-1 protease: the first step in validating a new target for drug design. Biopolymers. 82: 272-84. PMID 16508951 DOI: 10.1002/Bip.20497  0.454
2006 Vigil D, Lin JH, Sotriffer CA, Pennypacker JK, McCammon JA, Taylor SS. A simple electrostatic switch important in the activation of type I protein kinase A by cyclic AMP. Protein Science : a Publication of the Protein Society. 15: 113-21. PMID 16322564 DOI: 10.1110/Ps.051723606  0.491
2006 Giorgione JR, Lin JH, McCammon JA, Newton AC. Increased membrane affinity of the C1 domain of protein kinase Cdelta compensates for the lack of involvement of its C2 domain in membrane recruitment. The Journal of Biological Chemistry. 281: 1660-9. PMID 16293612 DOI: 10.1074/Jbc.M510251200  0.438
2004 Perryman AL, Lin JH, McCammon JA. HIV-1 protease molecular dynamics of a wild-type and of the V82F/I84V mutant: possible contributions to drug resistance and a potential new target site for drugs. Protein Science : a Publication of the Protein Society. 13: 1108-23. PMID 15044738 DOI: 10.1110/Ps.03468904  0.457
2003 Lin JH, Perryman AL, Schames JR, McCammon JA. The relaxed complex method: Accommodating receptor flexibility for drug design with an improved scoring scheme. Biopolymers. 68: 47-62. PMID 12579579 DOI: 10.1002/Bip.10218  0.46
2002 Lin JH, Baker NA, McCammon JA. Bridging implicit and explicit solvent approaches for membrane electrostatics. Biophysical Journal. 83: 1374-9. PMID 12202363 DOI: 10.1016/S0006-3495(02)73908-8  0.465
2002 Lin JH, Perryman AL, Schames JR, McCammon JA. Computational drug design accommodating receptor flexibility: the relaxed complex scheme. Journal of the American Chemical Society. 124: 5632-3. PMID 12010024 DOI: 10.1021/Ja0260162  0.46
2000 Lin JH, Baumgaertner A. Stability of a melittin pore in a lipid bilayer: a molecular dynamics study. Biophysical Journal. 78: 1714-24. PMID 10733954 DOI: 10.1016/S0006-3495(00)76723-3  0.578
2000 Lin JH, Baumgaertner A. Molecular dynamics simulations of hydrophobic and amphiphatic proteins interacting with a lipid bilayer membrane Computational and Theoretical Polymer Science. 10: 97-102. DOI: 10.1016/S1089-3156(99)00062-8  0.603
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