| Year |
Citation |
Score |
| 2022 |
Cope AL, Gilchrist MA. Quantifying shifts in natural selection on codon usage between protein regions: a population genetics approach. Bmc Genomics. 23: 408. PMID 35637464 DOI: 10.1186/s12864-022-08635-0 |
0.694 |
|
| 2020 |
Landerer C, O'Meara BC, Zaretzki R, Gilchrist MA. Unlocking a signal of introgression from codons in Lachancea kluyveri using a mutation-selection model. Bmc Evolutionary Biology. 20: 109. PMID 32842959 DOI: 10.1186/S12862-020-01649-W |
0.458 |
|
| 2020 |
Cope AL, O'Meara BC, Gilchrist MA. Gene expression of functionally-related genes coevolves across fungal species: detecting coevolution of gene expression using phylogenetic comparative methods. Bmc Genomics. 21: 370. PMID 32434474 DOI: 10.1186/S12864-020-6761-3 |
0.671 |
|
| 2018 |
Beaulieu JM, O'Meara BC, Zaretzki R, Landerer C, Chai J, Gilchrist MA. Population Genetics Based Phylogenetics Under Stabilizing Selection for an Optimal Amino Acid Sequence: A Nested Modeling Approach. Molecular Biology and Evolution. PMID 30521036 DOI: 10.1093/Molbev/Msy222 |
0.433 |
|
| 2018 |
Cope AL, Hettich RL, Gilchrist MA. Quantifying codon usage in signal peptides: Gene expression and amino acid usage explain apparent selection for inefficient codons. Biochimica Et Biophysica Acta. Biomembranes. 1860: 2479-2485. PMID 30279149 DOI: 10.1016/J.Bbamem.2018.09.010 |
0.676 |
|
| 2018 |
Landerer C, Cope A, Zaretzki R, Gilchrist MA. AnaCoDa: Analyzing Codon Data with Bayesian mixture models. Bioinformatics (Oxford, England). PMID 29522124 DOI: 10.1093/Bioinformatics/Bty138 |
0.65 |
|
| 2015 |
Kubatko L, Shah P, Herbei R, Gilchrist MA. A codon model of nucleotide substitution with selection on synonymous codon usage. Molecular Phylogenetics and Evolution. PMID 26358614 DOI: 10.1016/J.Ympev.2015.08.026 |
0.664 |
|
| 2015 |
Gilchrist MA, Chen WC, Shah P, Landerer CL, Zaretzki R. Estimating Gene Expression and Codon-Specific Translational Efficiencies, Mutation Biases, and Selection Coefficients from Genomic Data Alone. Genome Biology and Evolution. 7: 1559-79. PMID 25977456 DOI: 10.1093/Gbe/Evv087 |
0.674 |
|
| 2011 |
Shah P, Gilchrist MA. Explaining complex codon usage patterns with selection for translational efficiency, mutation bias, and genetic drift. Proceedings of the National Academy of Sciences of the United States of America. 108: 10231-6. PMID 21646514 DOI: 10.1073/Pnas.1016719108 |
0.681 |
|
| 2010 |
Shah P, Gilchrist MA. Effect of correlated tRNA abundances on translation errors and evolution of codon usage bias. Plos Genetics. 6: e1001128. PMID 20862306 DOI: 10.1371/Journal.Pgen.1001128 |
0.622 |
|
| 2010 |
Shah P, Gilchrist MA. Is thermosensing property of RNA thermometers unique? Plos One. 5: e11308. PMID 20625392 DOI: 10.1371/Journal.Pone.0011308 |
0.58 |
|
| 2010 |
Roy B, Vaughn JN, Kim BH, Zhou F, Gilchrist MA, Von Arnim AG. The h subunit of eIF3 promotes reinitiation competence during translation of mRNAs harboring upstream open reading frames. Rna (New York, N.Y.). 16: 748-61. PMID 20179149 DOI: 10.1261/Rna.2056010 |
0.361 |
|
| 2010 |
Zaretzki RL, Gilchrist MA, Briggs WM, Armagan A. Bias correction and Bayesian analysis of aggregate counts in SAGE libraries. Bmc Bioinformatics. 11: 72. PMID 20128916 DOI: 10.1186/1471-2105-11-72 |
0.367 |
|
| 2009 |
Gilchrist MA, Shah P, Zaretzki R. Measuring and detecting molecular adaptation in codon usage against nonsense errors during protein translation. Genetics. 183: 1493-505. PMID 19822731 DOI: 10.1534/Genetics.109.108209 |
0.642 |
|
| 2007 |
Gilchrist MA, Qin H, Zaretzki R. Modeling SAGE tag formation and its effects on data interpretation within a Bayesian framework. Bmc Bioinformatics. 8: 403. PMID 17945026 DOI: 10.1186/1471-2105-8-403 |
0.407 |
|
| 2007 |
Gilchrist MA. Combining models of protein translation and population genetics to predict protein production rates from codon usage patterns. Molecular Biology and Evolution. 24: 2362-72. PMID 17703051 DOI: 10.1093/Molbev/Msm169 |
0.478 |
|
| 2006 |
Gilchrist MA, Sulsky DL, Pringle A. Identifying fitness and optimal life-history strategies for an asexual filamentous fungus. Evolution; International Journal of Organic Evolution. 60: 970-9. PMID 16817537 DOI: 10.1111/J.0014-3820.2006.Tb01175.X |
0.562 |
|
| 2006 |
Gilchrist MA, Coombs D. Evolution of virulence: interdependence, constraints, and selection using nested models. Theoretical Population Biology. 69: 145-53. PMID 16198387 DOI: 10.1016/J.Tpb.2005.07.002 |
0.318 |
|
| 2006 |
Gilchrist MA, Wagner A. A model of protein translation including codon bias, nonsense errors, and ribosome recycling. Journal of Theoretical Biology. 239: 417-34. PMID 16171830 DOI: 10.1016/J.Jtbi.2005.08.007 |
0.386 |
|
| 2004 |
Gilchrist MA, Salter LA, Wagner A. A statistical framework for combining and interpreting proteomic datasets. Bioinformatics (Oxford, England). 20: 689-700. PMID 15033876 DOI: 10.1093/Bioinformatics/Btg469 |
0.344 |
|
| 2003 |
Hickerson MJ, Gilchrist MA, Takebayashi N. Calibrating a molecular clock from phylogeographic data: moments and likelihood estimators. Evolution; International Journal of Organic Evolution. 57: 2216-25. PMID 14628910 DOI: 10.1111/J.0014-3820.2003.Tb00234.X |
0.319 |
|
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