| Year |
Citation |
Score |
| 2019 |
Barry C, Schmitz MT, Argus C, Bolin JM, Probasco MD, Leng N, Duffin BM, Steill J, Swanson S, McIntosh BE, Stewart R, Kendziorski C, Thomson JA, Bacher R. Automated minute scale RNA-seq of pluripotent stem cell differentiation reveals early divergence of human and mouse gene expression kinetics. Plos Computational Biology. 15: e1007543. PMID 31815944 DOI: 10.1371/Journal.Pcbi.1007543 |
0.373 |
|
| 2019 |
Chu LF, Mamott D, Ni Z, Bacher R, Liu C, Swanson S, Kendziorski C, Stewart R, Thomson JA. An In Vitro Human Segmentation Clock Model Derived from Embryonic Stem Cells. Cell Reports. 28: 2247-2255.e5. PMID 31461642 DOI: 10.1016/J.Celrep.2019.07.090 |
0.309 |
|
| 2019 |
Keller MP, Rabaglia ME, Schueler KL, Stapleton DS, Gatti DM, Vincent M, Mitok KA, Wang Z, Ishimura T, Simonett SP, Emfinger CH, Das R, Beck T, Kendziorski C, Broman KW, et al. Gene loci associated with insulin secretion in islets from non-diabetic mice. The Journal of Clinical Investigation. 130. PMID 31343992 DOI: 10.1172/Jci129143 |
0.367 |
|
| 2019 |
Foote AG, Wang Z, Kendziorski C, Thibeault SL. Tissue specific human fibroblast differential expression based on RNAsequencing analysis. Bmc Genomics. 20: 308. PMID 31014251 DOI: 10.1186/S12864-019-5682-5 |
0.376 |
|
| 2018 |
Bacher R, Leng N, Chu LF, Ni Z, Thomson JA, Kendziorski C, Stewart R. Trendy: segmented regression analysis of expression dynamics in high-throughput ordered profiling experiments. Bmc Bioinformatics. 19: 380. PMID 30326833 DOI: 10.1186/S12859-018-2405-X |
0.345 |
|
| 2018 |
Keller MP, Gatti DM, Schueler KL, Rabaglia ME, Stapleton DS, Simecek P, Vincent M, Allen S, Broman AT, Bacher R, Kendziorski C, Broman KW, Yandell BS, Churchill GA, Attie AD. Genetic Drivers of Pancreatic Islet Function. Genetics. PMID 29567659 DOI: 10.1534/Genetics.118.300864 |
0.434 |
|
| 2017 |
Gasch AP, Yu FB, Hose J, Escalante LE, Place M, Bacher R, Kanbar J, Ciobanu D, Sandor L, Grigoriev IV, Kendziorski C, Quake SR, McClean MN. Single-cell RNA sequencing reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stress. Plos Biology. 15: e2004050. PMID 29240790 DOI: 10.1371/Journal.Pbio.2004050 |
0.335 |
|
| 2016 |
Keller MP, Paul PK, Rabaglia ME, Stapleton DS, Schueler KL, Broman AT, Ye SI, Leng N, Brandon CJ, Neto EC, Plaisier CL, Simonett SP, Kebede MA, Sheynkman GM, Klein MA, ... ... Kendziorski C, et al. The Transcription Factor Nfatc2 Regulates β-Cell Proliferation and Genes Associated with Type 2 Diabetes in Mouse and Human Islets. Plos Genetics. 12: e1006466. PMID 27935966 DOI: 10.1371/Journal.Pgen.1006466 |
0.427 |
|
| 2016 |
Korthauer KD, Chu LF, Newton MA, Li Y, Thomson J, Stewart R, Kendziorski C. A statistical approach for identifying differential distributions in single-cell RNA-seq experiments. Genome Biology. 17: 222. PMID 27782827 DOI: 10.1186/S13059-016-1077-Y |
0.37 |
|
| 2016 |
Kishimoto Y, Kishimoto AO, Ye S, Kendziorski C, Welham NV. Modeling fibrosis using fibroblasts isolated from scarred rat vocal folds. Laboratory Investigation; a Journal of Technical Methods and Pathology. PMID 27111284 DOI: 10.1038/Labinvest.2016.43 |
0.341 |
|
| 2016 |
Tian J, Keller MP, Broman AT, Kendziorski C, Yandell BS, Attie AD, Broman KW. The Dissection of Expression Quantitative Trait Locus Hotspots. Genetics. 202: 1563-74. PMID 26837753 DOI: 10.1534/Genetics.115.183624 |
0.386 |
|
| 2016 |
Leng N, Choi J, Chu LF, Thomson JA, Kendziorski C, Stewart R. OEFinder: A user interface to identify and visualize ordering effects in single-cell RNA-seq data. Bioinformatics (Oxford, England). PMID 26743507 DOI: 10.1093/Bioinformatics/Btw004 |
0.33 |
|
| 2015 |
Bradley WH, Eng K, Le M, Mackinnon AC, Kendziorski C, Rader JS. Comparing gene expression data from formalin-fixed, paraffin embedded tissues and qPCR with that from snap-frozen tissue and microarrays for modeling outcomes of patients with ovarian carcinoma. Bmc Clinical Pathology. 15: 17. PMID 26412982 DOI: 10.1186/S12907-015-0017-1 |
0.364 |
|
| 2015 |
Tian J, Keller MP, Oler AT, Rabaglia ME, Schueler KL, Stapleton DS, Broman AT, Zhao W, Kendziorski C, Yandell BS, Hagenbuch B, Broman KW, Attie AD. Identification of the Bile Acid Transporter Slco1a6 as a Candidate Gene That Broadly Affects Gene Expression in Mouse Pancreatic Islets. Genetics. 201: 1253-62. PMID 26385979 DOI: 10.1534/Genetics.115.179432 |
0.419 |
|
| 2015 |
Leng N, Chu LF, Barry C, Li Y, Choi J, Li X, Jiang P, Stewart RM, Thomson JA, Kendziorski C. Oscope identifies oscillatory genes in unsynchronized single-cell RNA-seq experiments. Nature Methods. 12: 947-50. PMID 26301841 DOI: 10.1038/Nmeth.3549 |
0.389 |
|
| 2015 |
Broman KW, Keller MP, Broman AT, Kendziorski C, Yandell BS, Sen Ś, Attie AD. Identification and Correction of Sample Mix-Ups in Expression Genetic Data: A Case Study. G3 (Bethesda, Md.). 5: 2177-86. PMID 26290572 DOI: 10.1534/G3.115.019778 |
0.362 |
|
| 2015 |
Marty AJ, Broman AT, Zarnowski R, Dwyer TG, Bond LM, Lounes-Hadj Sahraoui A, Fontaine J, Ntambi JM, Keleş S, Kendziorski C, Gauthier GM. Fungal Morphology, Iron Homeostasis, and Lipid Metabolism Regulated by a GATA Transcription Factor in Blastomyces dermatitidis. Plos Pathogens. 11: e1004959. PMID 26114571 DOI: 10.1371/Journal.Ppat.1004959 |
0.345 |
|
| 2015 |
Leng N, Li Y, McIntosh BE, Nguyen BK, Duffin B, Tian S, Thomson JA, Dewey CN, Stewart R, Kendziorski C. EBSeq-HMM: a Bayesian approach for identifying gene-expression changes in ordered RNA-seq experiments. Bioinformatics (Oxford, England). PMID 25847007 DOI: 10.1093/Bioinformatics/Btv193 |
0.379 |
|
| 2015 |
Tran KA, Jackson SA, Olufs ZP, Zaidan NZ, Leng N, Kendziorski C, Roy S, Sridharan R. Collaborative rewiring of the pluripotency network by chromatin and signalling modulating pathways. Nature Communications. 6: 6188. PMID 25650115 DOI: 10.1038/Ncomms7188 |
0.345 |
|
| 2015 |
Welham NV, Ling C, Dawson JA, Kendziorski C, Thibeault SL, Yamashita M. Microarray-based characterization of differential gene expression during vocal fold wound healing in rats. Disease Models & Mechanisms. 8: 311-21. PMID 25592437 DOI: 10.1242/Dmm.018366 |
0.34 |
|
| 2015 |
Korthauer KD, Kendziorski C. MADGiC: a model-based approach for identifying driver genes in cancer. Bioinformatics (Oxford, England). 31: 1526-35. PMID 25573922 DOI: 10.1093/Bioinformatics/Btu858 |
0.311 |
|
| 2014 |
St John HC, Bishop KA, Meyer MB, Benkusky NA, Leng N, Kendziorski C, Bonewald LF, Pike JW. The osteoblast to osteocyte transition: epigenetic changes and response to the vitamin D3 hormone. Molecular Endocrinology (Baltimore, Md.). 28: 1150-65. PMID 24877565 DOI: 10.1210/Me.2014-1091 |
0.385 |
|
| 2014 |
Iruretagoyena JI, Davis W, Bird C, Olsen J, Radue R, Teo Broman A, Kendziorski C, Splinter BonDurant S, Golos T, Bird I, Shah D. Metabolic gene profile in early human fetal heart development. Molecular Human Reproduction. 20: 690-700. PMID 24674993 DOI: 10.1093/Molehr/Gau026 |
0.354 |
|
| 2014 |
Iruretagoyena JI, Davis W, Bird C, Olsen J, Radue R, Teo Broman A, Kendziorski C, Splinter BonDurant S, Golos T, Bird I, Shah D. Differential changes in gene expression in human brain during late first trimester and early second trimester of pregnancy. Prenatal Diagnosis. 34: 431-7. PMID 24436137 DOI: 10.1002/Pd.4322 |
0.343 |
|
| 2014 |
Song C, Chung L, Pan X, Zhanjun L, Ding Y, Sachdev M, Muthusami S, Gowda CS, Ge Z, Steffens S, Tan B, Kendziorski C, Newton M, Dovat S. Chromatin State Shaping the Gene Expression Profiling in the Inducible Differentiation of Promyelocytic Leukemia Cells Blood. 124: 5188-5188. DOI: 10.1182/Blood.V124.21.5188.5188 |
0.42 |
|
| 2013 |
Jiang YZ, Wang K, Li Y, Dai CF, Wang P, Kendziorski C, Chen DB, Zheng J. Enhanced cellular responses and distinct gene profiles in human fetoplacental artery endothelial cells under chronic low oxygen. Biology of Reproduction. 89: 133. PMID 24152727 DOI: 10.1095/Biolreprod.113.110551 |
0.344 |
|
| 2013 |
Smits BM, Haag JD, Rissman AI, Sharma D, Tran A, Schoenborn AA, Baird RC, Peiffer DS, Leinweber DQ, Muelbl MJ, Meilahn AL, Eichelberg MR, Leng N, Kendziorski C, John MC, et al. The gene desert mammary carcinoma susceptibility locus Mcs1a regulates Nr2f1 modifying mammary epithelial cell differentiation and proliferation. Plos Genetics. 9: e1003549. PMID 23785296 DOI: 10.1371/Journal.Pgen.1003549 |
0.373 |
|
| 2013 |
Jiang YZ, Wang K, Li Y, Dai CF, Wang P, Kendziorski C, Chen DB, Zheng J. Transcriptional and functional adaptations of human endothelial cells to physiological chronic low oxygen. Biology of Reproduction. 88: 114. PMID 23536375 DOI: 10.1095/Biolreprod.113.108225 |
0.311 |
|
| 2013 |
Leng N, Dawson JA, Thomson JA, Ruotti V, Rissman AI, Smits BM, Haag JD, Gould MN, Stewart RM, Kendziorski C. EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics (Oxford, England). 29: 1035-43. PMID 23428641 DOI: 10.1093/bioinformatics/btt087 |
0.375 |
|
| 2013 |
Bradley W, Eng K, Kendziorski C, Le M, Mackinnon C, Rader J. Gene expression levels in archived FFPE ovarian carcinoma samples: Comparison of qPCR with tissue microarray in a 9-core pathway predictive treatment model in serous ovarian carcinoma Gynecologic Oncology. 130: e136-e137. DOI: 10.1016/J.Ygyno.2013.04.389 |
0.302 |
|
| 2012 |
Tu Z, Keller MP, Zhang C, Rabaglia ME, Greenawalt DM, Yang X, Wang IM, Dai H, Bruss MD, Lum PY, Zhou YP, Kemp DM, Kendziorski C, Yandell BS, Attie AD, et al. Integrative analysis of a cross-loci regulation network identifies App as a gene regulating insulin secretion from pancreatic islets. Plos Genetics. 8: e1003107. PMID 23236292 DOI: 10.1371/Journal.Pgen.1003107 |
0.417 |
|
| 2012 |
Bagley BN, Keane TM, Maklakova VI, Marshall JG, Lester RA, Cancel MM, Paulsen AR, Bendzick LE, Been RA, Kogan SC, Cormier RT, Kendziorski C, Adams DJ, Collier LS. A dominantly acting murine allele of Mcm4 causes chromosomal abnormalities and promotes tumorigenesis. Plos Genetics. 8: e1003034. PMID 23133403 DOI: 10.1371/Journal.Pgen.1003034 |
0.309 |
|
| 2012 |
Dawson JA, Ye S, Kendziorski C. R/EBcoexpress: an empirical Bayesian framework for discovering differential co-expression. Bioinformatics (Oxford, England). 28: 1939-40. PMID 22595207 DOI: 10.1093/Bioinformatics/Bts268 |
0.326 |
|
| 2012 |
Newton MA, He Q, Kendziorski C. A model-based analysis to infer the functional content of a gene list. Statistical Applications in Genetics and Molecular Biology. 11. PMID 22499692 DOI: 10.2202/1544-6115.1716 |
0.336 |
|
| 2012 |
Dawson JA, Kendziorski C. An empirical Bayesian approach for identifying differential coexpression in high-throughput experiments. Biometrics. 68: 455-65. PMID 22004327 DOI: 10.1111/J.1541-0420.2011.01688.X |
0.393 |
|
| 2012 |
Fleming J, Isaak A, Hardin LV, Huston J, Boland J, Broman AT, Kendziorski C, Field A, Fabry Z. Temporal Changes in MRI Activity, Inflammation, Immunomodulation, and Gene Expression in Relapsing-Remitting Multiple Sclerosis Subjects Treated with Helminth Probiotic Trichuris Suis (S30.004) Neurology. 78: S30.004-S30.004. DOI: 10.1212/Wnl.78.1_Meetingabstracts.S30.004 |
0.323 |
|
| 2011 |
Flowers MT, Paton CM, O'Byrne SM, Schiesser K, Dawson JA, Blaner WS, Kendziorski C, Ntambi JM. Metabolic changes in skin caused by Scd1 deficiency: a focus on retinol metabolism. Plos One. 6: e19734. PMID 21573029 DOI: 10.1371/Journal.Pone.0019734 |
0.358 |
|
| 2011 |
Wang P, Dawson JA, Keller MP, Yandell BS, Thornberry NA, Zhang BB, Wang IM, Schadt EE, Attie AD, Kendziorski C. A model selection approach for expression quantitative trait loci (eQTL) mapping. Genetics. 187: 611-21. PMID 21115971 DOI: 10.1534/Genetics.110.122796 |
0.325 |
|
| 2011 |
Bagley BN, Maklakova V, Kendziorski C, Adams DJ, Collier LS, Marshall JG, Lester RA, Cancel MM, Bendzick LG, Keane T, Kogan SC, Sullivan R, Cormier R. Abstract A37: A dominantly acting allele of murine Mcm4 causes chromosome instability and promotes leukemiogenesis Cancer Research. 71. DOI: 10.1158/1538-7445.Fbcr11-A37 |
0.32 |
|
| 2009 |
Zhao E, Keller MP, Rabaglia ME, Oler AT, Stapleton DS, Schueler KL, Neto EC, Moon JY, Wang P, Wang IM, Lum PY, Ivanovska I, Cleary M, Greenawalt D, Tsang J, ... ... Kendziorski C, et al. Obesity and genetics regulate microRNAs in islets, liver, and adipose of diabetic mice. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 20: 476-85. PMID 19727952 DOI: 10.1007/S00335-009-9217-2 |
0.66 |
|
| 2009 |
Choi Y, Kendziorski C. Statistical methods for gene set co-expression analysis. Bioinformatics (Oxford, England). 25: 2780-6. PMID 19689953 DOI: 10.1093/Bioinformatics/Btp502 |
0.696 |
|
| 2008 |
Flowers MT, Keller MP, Choi Y, Lan H, Kendziorski C, Ntambi JM, Attie AD. Liver gene expression analysis reveals endoplasmic reticulum stress and metabolic dysfunction in SCD1-deficient mice fed a very low-fat diet. Physiological Genomics. 33: 361-72. PMID 18381840 DOI: 10.1152/Physiolgenomics.00139.2007 |
0.688 |
|
| 2008 |
Ferrara CT, Wang P, Neto EC, Stevens RD, Bain JR, Wenner BR, Ilkayeva OR, Keller MP, Blasiole DA, Kendziorski C, Yandell BS, Newgard CB, Attie AD. Genetic networks of liver metabolism revealed by integration of metabolic and transcriptional profiling. Plos Genetics. 4: e1000034. PMID 18369453 DOI: 10.1371/Journal.Pgen.1000034 |
0.384 |
|
| 2008 |
Keller MP, Choi Y, Wang P, Davis DB, Rabaglia ME, Oler AT, Stapleton DS, Argmann C, Schueler KL, Edwards S, Steinberg HA, Chaibub Neto E, Kleinhanz R, Turner S, Hellerstein MK, ... ... Kendziorski C, et al. A gene expression network model of type 2 diabetes links cell cycle regulation in islets with diabetes susceptibility. Genome Research. 18: 706-16. PMID 18347327 DOI: 10.1101/Gr.074914.107 |
0.691 |
|
| 2008 |
Mellman DL, Gonzales ML, Song C, Barlow CA, Wang P, Kendziorski C, Anderson RA. A PtdIns4,5P2-regulated nuclear poly(A) polymerase controls expression of select mRNAs. Nature. 451: 1013-7. PMID 18288197 DOI: 10.1038/Nature06666 |
0.314 |
|
| 2007 |
Wang H, Teske D, Tess A, Kohlhepp R, Choi Y, Kendziorski C, Moser AR. Identification of novel modifier loci of Apc Min affecting mammary tumor development. Cancer Research. 67: 11226-33. PMID 18056448 DOI: 10.1158/0008-5472.Can-07-2487 |
0.638 |
|
| 2007 |
Chen D, Wang P, Lewis RL, Daigh CA, Ho C, Chen X, Thomson JA, Kendziorski C. A microarray analysis of the emergence of embryonic definitive hematopoiesis. Experimental Hematology. 35: 1344-57. PMID 17761287 DOI: 10.1016/J.Exphem.2007.06.004 |
0.396 |
|
| 2007 |
Chen M, Kendziorski C. A statistical framework for expression quantitative trait loci mapping. Genetics. 177: 761-71. PMID 17660576 DOI: 10.1534/Genetics.107.071407 |
0.329 |
|
| 2007 |
Couto FM, Minn AH, Pise-Masison CA, Radonovich M, Brady JN, Hanson M, Fernandez LA, Wang P, Kendziorski C, Shalev A. Exenatide blocks JAK1-STAT1 in pancreatic beta cells. Metabolism: Clinical and Experimental. 56: 915-8. PMID 17570252 DOI: 10.1016/J.Metabol.2007.02.004 |
0.319 |
|
| 2007 |
Flowers JB, Oler AT, Nadler ST, Choi Y, Schueler KL, Yandell BS, Kendziorski CM, Attie AD. Abdominal obesity in BTBR male mice is associated with peripheral but not hepatic insulin resistance. American Journal of Physiology. Endocrinology and Metabolism. 292: E936-45. PMID 17132824 DOI: 10.1152/Ajpendo.00370.2006 |
0.638 |
|
| 2007 |
Burleigh DW, Kendziorski CM, Choi YJ, Grindle KM, Grendell RL, Magness RR, Golos TG. Microarray analysis of BeWo and JEG3 trophoblast cell lines: identification of differentially expressed transcripts. Placenta. 28: 383-9. PMID 16797695 DOI: 10.1016/J.Placenta.2006.05.001 |
0.665 |
|
| 2006 |
Yuan M, Kendziorski C. A unified approach for simultaneous gene clustering and differential expression identification. Biometrics. 62: 1089-98. PMID 17156283 DOI: 10.1111/J.1541-0420.2006.00611.X |
0.359 |
|
| 2006 |
Flowers MT, Groen AK, Oler AT, Keller MP, Choi Y, Schueler KL, Richards OC, Lan H, Miyazaki M, Kuipers F, Kendziorski CM, Ntambi JM, Attie AD. Cholestasis and hypercholesterolemia in SCD1-deficient mice fed a low-fat, high-carbohydrate diet. Journal of Lipid Research. 47: 2668-80. PMID 17005996 DOI: 10.1194/Jlr.M600203-Jlr200 |
0.625 |
|
| 2006 |
Lan H, Chen M, Flowers JB, Yandell BS, Stapleton DS, Mata CM, Mui ET, Flowers MT, Schueler KL, Manly KF, Williams RW, Kendziorski C, Attie AD. Combined expression trait correlations and expression quantitative trait locus mapping. Plos Genetics. 2: e6. PMID 16424919 DOI: 10.1371/Journal.Pgen.0020006 |
0.409 |
|
| 2006 |
Yuan M, Kendziorski C. Hidden Markov Models for Microarray Time Course Data in Multiple Biological Conditions Journal of the American Statistical Association. 101: 1323-1332. DOI: 10.1198/016214505000000394 |
0.35 |
|
| 2005 |
Minn AH, Pise-Masison CA, Radonovich M, Brady JN, Wang P, Kendziorski C, Shalev A. Gene expression profiling in INS-1 cells overexpressing thioredoxin-interacting protein. Biochemical and Biophysical Research Communications. 336: 770-8. PMID 16143294 DOI: 10.1016/J.Bbrc.2005.08.161 |
0.423 |
|
| 2005 |
Kendziorski C, Irizarry RA, Chen KS, Haag JD, Gould MN. On the utility of pooling biological samples in microarray experiments. Proceedings of the National Academy of Sciences of the United States of America. 102: 4252-7. PMID 15755808 DOI: 10.1073/Pnas.0500607102 |
0.356 |
|
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