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Slava S. Epstein - Publications

Affiliations: 
Biological Sciences Northeastern University, Boston, MA, United States 
Area:
Microbiology Biology
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55 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Seo EY, Jung D, Epstein SS, Zhang W, Owen JS, Baba H, Yamamoto A, Harada M, Nakashimada Y, Kato S, Aoi Y, He S. A targeted liquid cultivation method for previously uncultured non-colony forming microbes. Frontiers in Microbiology. 14: 1194466. PMID 37362942 DOI: 10.3389/fmicb.2023.1194466  0.313
2021 Srinivasan S, Beamer MA, Fiedler TL, Austin MN, Sizova MV, Strenk SM, Agnew KJ, Gowda GAN, Raftery D, Epstein SS, Fredricks DN, Hillier SL. sp. nov., sp. nov., and sp. nov.: novel bacteria isolated from the female genital tract. International Journal of Systematic and Evolutionary Microbiology. PMID 33616513 DOI: 10.1099/ijsem.0.004702  0.327
2020 Acuña JJ, Marileo LG, Araya MA, Rilling JI, Larama GA, Mora ML, Epstein S, Jorquera MA. In Situ Cultivation Approach to Increase the Culturable Bacterial Diversity in the Rhizobiome of Plants Journal of Soil Science and Plant Nutrition. 1-16. DOI: 10.1007/S42729-020-00222-0  0.34
2019 Zhang W, Chen C, Yuan Y, Su D, Ding L, Epstein SS, He S. Pararhodobacter marinus sp. nov., a bacterium isolated from marine sediment in the East China Sea and emended description of the genus Pararhodobacter. International Journal of Systematic and Evolutionary Microbiology. PMID 31385783 DOI: 10.1099/Ijsem.0.003627  0.384
2019 Epstein SS. Microbial Food Webs in Marine Sediments. II. Seasonal Changes in Trophic Interactions in a Sandy Tidal Flat Community Microbial Ecology. 34: 199-209. PMID 9337415 DOI: 10.1007/S002489900049  0.347
2019 Epstein SS. Microbial Food Webs in Marine Sediments. I. Trophic Interactions and Grazing Rates in Two Tidal Flat Communities Microbial Ecology. 34: 188-98. PMID 9337414 DOI: 10.1007/S002489900048  0.356
2018 Zhang W, Zhou X, Yuan Y, Liu B, Epstein SS, He S. Complete Genome Sequence of Saccharospirillum mangrovi HK-33 Sheds Light on the Ecological Role of a Bacterium in Mangrove Sediment Environment. Current Microbiology. PMID 30564885 DOI: 10.1007/S00284-018-1600-3  0.347
2018 Yu Y, Tsitrin T, Singh H, Doerfert SN, Sizova MV, Epstein SS, Pieper R. Proteome Profiled in Polymicrobial Urethral Catheter Biofilms. Proteomes. 6. PMID 30544882 DOI: 10.3390/Proteomes6040052  0.388
2018 Zhang W, Yuan Y, Su D, Ding L, Yan X, Wu M, Epstein SS, He S. Saccharospirillum mangrovi sp. nov., a bacterium isolated from mangrove sediment. International Journal of Systematic and Evolutionary Microbiology. PMID 30016235 DOI: 10.1099/Ijsem.0.002899  0.365
2018 Zhang WY, Yuan Y, Su DQ, He XP, Han SB, Epstein SS, He S, Wu M. Gallaecimonas mangrovi sp. nov., a novel bacterium isolated from mangrove sediment. Antonie Van Leeuwenhoek. PMID 29637394 DOI: 10.1007/S10482-018-1076-Y  0.333
2017 Berdy B, Spoering AL, Ling LL, Epstein SS. In situ cultivation of previously uncultivable microorganisms using the ichip. Nature Protocols. 12: 2232-2242. PMID 29532802 DOI: 10.1038/Nprot.2017.074  0.398
2017 Kim S, De Jonghe J, Kulesa AB, Feldman D, Vatanen T, Bhattacharyya RP, Berdy B, Gomez J, Nolan J, Epstein S, Blainey PC. High-throughput automated microfluidic sample preparation for accurate microbial genomics. Nature Communications. 8: 13919. PMID 28128213 DOI: 10.1038/Ncomms13919  0.336
2016 Srinivasan S, Munch MM, Sizova MV, Fiedler TL, Kohler CM, Hoffman NG, Liu C, Agnew KJ, Marrazzo JM, Epstein SS, Fredricks DN. More Easily Cultivated Than Identified: Classical Isolation With Molecular Identification of Vaginal Bacteria. The Journal of Infectious Diseases. 214: S21-8. PMID 27449870 DOI: 10.1093/Infdis/Jiw192  0.356
2015 Sizova MV, Chilaka A, Earl AM, Doerfert SN, Muller PA, Torralba M, McCorrison JM, Durkin AS, Nelson KE, Epstein SS. High-quality draft genome sequences of five anaerobic oral bacteria and description of Peptoanaerobacter stomatis gen. nov., sp. nov., a new member of the family Peptostreptococcaceae. Standards in Genomic Sciences. 10: 37. PMID 26221418 DOI: 10.1186/S40793-015-0027-8  0.347
2015 Sizova MV, Doerfert SN, Gavrish E, Epstein SS. TM7 detection in human microbiome: Are PCR primers and FISH probes specific enough? Journal of Microbiological Methods. 114: 51-3. PMID 25957511 DOI: 10.1016/J.Mimet.2015.05.005  0.361
2015 Ling LL, Schneider T, Peoples AJ, Spoering AL, Engels I, Conlon BP, Mueller A, Schäberle TF, Hughes DE, Epstein S, Jones M, Lazarides L, Steadman VA, Cohen DR, Felix CR, et al. A new antibiotic kills pathogens without detectable resistance. Nature. 517: 455-9. PMID 25561178 DOI: 10.1038/Nature14098  0.313
2014 Jung D, Seo EY, Epstein SS, Joung Y, Han J, Parfenova VV, Belykh OI, Gladkikh AS, Ahn TS. Application of a new cultivation technology, I-tip, for studying microbial diversity in freshwater sponges of Lake Baikal, Russia. Fems Microbiology Ecology. 90: 417-23. PMID 25078251 DOI: 10.1111/1574-6941.12399  0.437
2014 Tandogan N, Abadian PN, Epstein S, Aoi Y, Goluch ED. Isolation of microorganisms using sub-micrometer constrictions. Plos One. 9: e101429. PMID 24978477 DOI: 10.1371/Journal.Pone.0101429  0.369
2013 Epstein SS. The phenomenon of microbial uncultivability. Current Opinion in Microbiology. 16: 636-42. PMID 24011825 DOI: 10.1016/J.Mib.2013.08.003  0.385
2013 Sizova MV, Muller P, Panikov N, Mandalakis M, Hohmann T, Hazen A, Fowle W, Prozorov T, Bazylinski DA, Epstein SS. Stomatobaculum longum gen. nov., sp. nov., an obligately anaerobic bacterium from the human oral cavity. International Journal of Systematic and Evolutionary Microbiology. 63: 1450-6. PMID 22843721 DOI: 10.1099/Ijs.0.042812-0  0.371
2013 Jung D, Seo EY, Epstein SS, Joung Y, Yim JH, Lee H, Ahn TS. A new method for microbial cultivation and its application to bacterial community analysis in Buus Nuur, Mongolia Fundamental and Applied Limnology. 182: 171-181. DOI: 10.1127/1863-9135/2013/0391  0.344
2012 Vd'ačný P, Bourland WA, Orsi W, Epstein SS, Foissner W. Genealogical analyses of multiple loci of litostomatean ciliates (Protista, Ciliophora, Litostomatea). Molecular Phylogenetics and Evolution. 65: 397-411. PMID 22789763 DOI: 10.1016/J.Ympev.2012.06.024  0.685
2012 Buerger S, Spoering A, Gavrish E, Leslin C, Ling L, Epstein SS. Microbial scout hypothesis and microbial discovery. Applied and Environmental Microbiology. 78: 3229-33. PMID 22367084 DOI: 10.1128/Aem.07308-11  0.426
2012 Buerger S, Spoering A, Gavrish E, Leslin C, Ling L, Epstein SS. Microbial scout hypothesis, stochastic exit from dormancy, and the nature of slow growers. Applied and Environmental Microbiology. 78: 3221-8. PMID 22367083 DOI: 10.1128/Aem.07307-11  0.4
2012 Sizova MV, Hohmann T, Hazen A, Paster BJ, Halem SR, Murphy CM, Panikov NS, Epstein SS. New approaches for isolation of previously uncultivated oral bacteria. Applied and Environmental Microbiology. 78: 194-203. PMID 22057871 DOI: 10.1128/Aem.06813-11  0.43
2012 Orsi W, Edgcomb V, Faria J, Foissner W, Fowle WH, Hohmann T, Suarez P, Taylor C, Taylor GT, Vd'acný P, Epstein SS. Class Cariacotrichea, a novel ciliate taxon from the anoxic Cariaco Basin, Venezuela. International Journal of Systematic and Evolutionary Microbiology. 62: 1425-33. PMID 21841005 DOI: 10.1099/Ijs.0.034710-0  0.659
2011 Vďačný P, Orsi W, Bourland WA, Shimano S, Epstein SS, Foissner W. Morphological and molecular phylogeny of dileptid and tracheliid ciliates: resolution at the base of the class Litostomatea (Ciliophora, Rhynchostomatia). European Journal of Protistology. 47: 295-313. PMID 21641780 DOI: 10.1016/J.Ejop.2011.04.006  0.645
2011 Edgcomb V, Orsi W, Bunge J, Jeon S, Christen R, Leslin C, Holder M, Taylor GT, Suarez P, Varela R, Epstein S. Protistan microbial observatory in the Cariaco Basin, Caribbean. I. Pyrosequencing vs Sanger insights into species richness. The Isme Journal. 5: 1344-56. PMID 21390079 DOI: 10.1038/Ismej.2011.6  0.703
2011 Orsi W, Edgcomb V, Jeon S, Leslin C, Bunge J, Taylor GT, Varela R, Epstein S. Protistan microbial observatory in the Cariaco Basin, Caribbean. II. Habitat specialization. The Isme Journal. 5: 1357-73. PMID 21390077 DOI: 10.1038/Ismej.2011.7  0.675
2011 Edgcomb V, Orsi W, Taylor GT, Vdacny P, Taylor C, Suarez P, Epstein S. Accessing marine protists from the anoxic Cariaco Basin. The Isme Journal. 5: 1237-41. PMID 21390076 DOI: 10.1038/Ismej.2011.10  0.648
2011 Vd'ačný P, Bourland WA, Orsi W, Epstein SS, Foissner W. Phylogeny and classification of the Litostomatea (Protista, Ciliophora), with emphasis on free-living taxa and the 18S rRNA gene. Molecular Phylogenetics and Evolution. 59: 510-22. PMID 21333743 DOI: 10.1016/J.Ympev.2011.02.016  0.686
2010 Bollmann A, Palumbo AV, Lewis K, Epstein SS. Isolation and physiology of bacteria from contaminated subsurface sediments. Applied and Environmental Microbiology. 76: 7413-9. PMID 20870785 DOI: 10.1128/Aem.00376-10  0.408
2010 Lewis K, Epstein S, D'Onofrio A, Ling LL. Uncultured microorganisms as a source of secondary metabolites. The Journal of Antibiotics. 63: 468-76. PMID 20648021 DOI: 10.1038/Ja.2010.87  0.418
2010 D'Onofrio A, Crawford JM, Stewart EJ, Witt K, Gavrish E, Epstein S, Clardy J, Lewis K. Siderophores from neighboring organisms promote the growth of uncultured bacteria. Chemistry & Biology. 17: 254-64. PMID 20338517 DOI: 10.1016/J.Chembiol.2010.02.010  0.372
2010 Nichols D, Cahoon N, Trakhtenberg EM, Pham L, Mehta A, Belanger A, Kanigan T, Lewis K, Epstein SS. Use of ichip for high-throughput in situ cultivation of "uncultivable" microbial species. Applied and Environmental Microbiology. 76: 2445-50. PMID 20173072 DOI: 10.1128/Aem.01754-09  0.446
2009 Hong S, Bunge J, Leslin C, Jeon S, Epstein SS. Polymerase chain reaction primers miss half of rRNA microbial diversity. The Isme Journal. 3: 1365-73. PMID 19693101 DOI: 10.1038/Ismej.2009.89  0.418
2009 Edgcomb V, Orsi W, Leslin C, Epstein SS, Bunge J, Jeon S, Yakimov MM, Behnke A, Stoeck T. Protistan community patterns within the brine and halocline of deep hypersaline anoxic basins in the eastern Mediterranean Sea. Extremophiles : Life Under Extreme Conditions. 13: 151-67. PMID 19057844 DOI: 10.1007/S00792-008-0206-2  0.675
2008 Jeon S, Bunge J, Leslin C, Stoeck T, Hong S, Epstein SS. Environmental rRNA inventories miss over half of protistan diversity. Bmc Microbiology. 8: 222. PMID 19087295 DOI: 10.1186/1471-2180-8-222  0.49
2008 Nichols D, Lewis K, Orjala J, Mo S, Ortenberg R, O'Connor P, Zhao C, Vouros P, Kaeberlein T, Epstein SS. Short peptide induces an "uncultivable" microorganism to grow in vitro. Applied and Environmental Microbiology. 74: 4889-97. PMID 18515474 DOI: 10.1128/Aem.00393-08  0.393
2008 Lewis K, Epstein S, Godoy VG, Hong SH. Intact DNA in ancient permafrost. Trends in Microbiology. 16: 92-4. PMID 18291656 DOI: 10.1016/J.Tim.2008.01.002  0.312
2008 Gavrish E, Bollmann A, Epstein S, Lewis K. A trap for in situ cultivation of filamentous actinobacteria. Journal of Microbiological Methods. 72: 257-62. PMID 18255181 DOI: 10.1016/J.Mimet.2007.12.009  0.314
2007 Bollmann A, Lewis K, Epstein SS. Incubation of environmental samples in a diffusion chamber increases the diversity of recovered isolates. Applied and Environmental Microbiology. 73: 6386-90. PMID 17720826 DOI: 10.1128/Aem.01309-07  0.316
2007 Giovannoni S, Foster R, Rappé M, Epstein S. New Cultivation Strategies Bring More Microbial Plankton Species into the Laboratory Oceanography. 20: 62-69. DOI: 10.5670/Oceanog.2007.49  0.401
2007 Epstein S, López-García P. “Missing” protists: a molecular prospective Biodiversity and Conservation. 17: 261-276. DOI: 10.1007/S10531-007-9250-Y  0.468
2006 Jeon SO, Bunge J, Stoeck T, Barger KJ, Hong SH, Epstein SS. Synthetic statistical approach reveals a high degree of richness of microbial eukaryotes in an anoxic water column. Applied and Environmental Microbiology. 72: 6578-83. PMID 17021208 DOI: 10.1128/Aem.00787-06  0.443
2006 Stoeck T, Hayward B, Taylor GT, Varela R, Epstein SS. A multiple PCR-primer approach to access the microeukaryotic diversity in environmental samples. Protist. 157: 31-43. PMID 16431157 DOI: 10.1016/J.Protis.2005.10.004  0.498
2006 Hong SH, Bunge J, Jeon SO, Epstein SS. Predicting microbial species richness. Proceedings of the National Academy of Sciences of the United States of America. 103: 117-22. PMID 16368757 DOI: 10.1073/Pnas.0507245102  0.426
2003 Stoeck T, Fowle WH, Epstein SS. Methodology of protistan discovery: from rRNA detection to quality scanning electron microscope images. Applied and Environmental Microbiology. 69: 6856-63. PMID 14602650 DOI: 10.1128/Aem.69.11.6856-6863.2003  0.391
2003 Hayward BH, Droste R, Epstein SS. Interstitial ciliates: benthic microaerophiles or planktonic anaerobes? The Journal of Eukaryotic Microbiology. 50: 356-9. PMID 14563174 DOI: 10.1111/J.1550-7408.2003.Tb00148.X  0.361
2003 Stoeck T, Taylor GT, Epstein SS. Novel eukaryotes from the permanently anoxic Cariaco Basin (Caribbean Sea). Applied and Environmental Microbiology. 69: 5656-63. PMID 12957957 DOI: 10.1128/Aem.69.9.5656-5663.2003  0.344
2003 Stoeck T, Epstein S. Novel eukaryotic lineages inferred from small-subunit rRNA analyses of oxygen-depleted marine environments. Applied and Environmental Microbiology. 69: 2657-63. PMID 12732534 DOI: 10.1128/Aem.69.5.2657-2663.2003  0.454
2002 Kaeberlein T, Lewis K, Epstein SS. Isolating "uncultivable" microorganisms in pure culture in a simulated natural environment. Science (New York, N.Y.). 296: 1127-9. PMID 12004133 DOI: 10.1126/Science.1070633  0.347
1998 Epstein SS, Bazylinski DA, Fowle WH. Epibiotic bacteria on several ciliates from marine sediments Journal of Eukaryotic Microbiology. 45: 64-70. DOI: 10.1111/J.1550-7408.1998.Tb05071.X  0.352
1995 Epstein S, Rossel J. Enumeration of sandy sediment bacteria: search for optimal protocol Marine Ecology Progress Series. 117: 289-298. DOI: 10.3354/Meps117289  0.32
1994 EPSTEIN SS. A New Marine Interstitial Ciliate from the Northwest Atlantic Coast Tracheloraphis primitarum Sp. N. (Ciliophora, Kinetofragminophora, Karyorelictida, Trachelocercidae) The Journal of Eukaryotic Microbiology. 41: 500-503. DOI: 10.1111/J.1550-7408.1994.Tb06049.X  0.348
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