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Matthew G. Knepley, Ph.D. - Publications

Affiliations: 
2000 Purdue University, West Lafayette, IN, United States 
Area:
Computer Science, Fluid and Plasma Physics
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36 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Fabien MS, Knepley MG, Mills RT, Rivière BM. Manycore Parallel Computing for a Hybridizable Discontinuous Galerkin Nested Multigrid Method Siam Journal On Scientific Computing. 41. DOI: 10.1137/17M1128903  0.367
2019 Afanasiev M, Boehm C, Driel Mv, Krischer L, Rietmann M, May DA, Knepley MG, Fichtner A. Modular and flexible spectral-element waveform modelling in two and three dimensions Geophysical Journal International. 216: 1675-1692. DOI: 10.1093/Gji/Ggy469  0.439
2019 Joshaghani MS, Chang J, Nakshatrala KB, Knepley MG. Composable block solvers for the four-field double porosity/permeability model Journal of Computational Physics. 386: 428-466. DOI: 10.1016/J.Jcp.2019.02.020  0.518
2018 Chang J, Fabien MS, Knepley MG, Mills RT. Comparative study of finite element methods using the Time-Accuracy-Size (TAS) spectrum analysis Siam Journal On Scientific Computing. 40. DOI: 10.1137/18M1172260  0.439
2018 Chang J, Nakshatrala KB, Knepley MG, Johnsson SL. A performance spectrum for parallel computational frameworks that solve PDEs Concurrency and Computation: Practice and Experience. 30. DOI: 10.1002/Cpe.4401  0.336
2017 Molavi Tabrizi A, Goossens S, Mehdizadeh Rahimi A, Cooper CD, Knepley MG, Bardhan JP. Extending the Solvation-Layer Interface Condition (SLIC) Continum Electrostatic Model to Linearized Poisson-Boltzmann Solvent. Journal of Chemical Theory and Computation. PMID 28379697 DOI: 10.1021/Acs.Jctc.6B00832  0.301
2017 Adams MF, Hirvijoki E, Knepley MG, Brown J, Isaac T, Mills RT. Landau Collision Integral Solver with Adaptive Mesh Refinement on Emerging Architectures Siam Journal On Scientific Computing. 39. DOI: 10.1137/17M1118828  0.457
2016 May DA, Sanan P, Rupp K, Knepley MG, Smith BF. Extreme-scale multigrid components within PETSc Pasc 2016 - Proceedings of the Platform For Advanced Scientific Computing Conference. DOI: 10.1145/2929908.2929913  0.318
2016 Lange M, Mitchell L, Knepley MG, Gorman GJ. Efficient mesh management in Firedrake using PETSc-DMPlex Siam Journal On Scientific Computing. 38. DOI: 10.1137/15M1026092  0.445
2016 Adams MF, Brown J, Knepley MG, Samtaney R. Segmental Refinement: A Multigrid Technique For Data Locality Siam Journal On Scientific Computing. 38. DOI: 10.1137/140975127  0.302
2016 Tabrizi AM, Knepley MG, Bardhan JP. Generalising the mean spherical approximation as a multiscale, nonlinear boundary condition at the solute–solvent interface Molecular Physics. 1-10. DOI: 10.1080/00268976.2016.1198503  0.335
2016 Morgan H, Knepley MG, Sanan P, Scott LR. A stochastic performance model for pipelined Krylov methods Concurrency Computation. DOI: 10.1002/Cpe.3820  0.352
2015 Bardhan JP, Knepley MG, Brune P. Nonlocal Electrostatics in Spherical Geometries Using Eigenfunction Expansions of Boundary-Integral Operators. Molecular Based Mathematical Biology (Online). 3: 1-22. PMID 26273581 DOI: 10.1515/Mlbmb-2015-0001  0.402
2015 Bardhan JP, Knepley MG. Multiscale models and approximation algorithms for protein electrostatics Bioelectromagnetics. 61: 163-174. DOI: 10.2495/Bem380131  0.35
2015 Brune PR, Knepley MG, Smith BF, Tu X. Composing scalable nonlinear algebraic solvers Siam Review. 57: 535-565. DOI: 10.1137/130936725  0.345
2015 Brown J, Knepley MG, Smith BF. Run-time extensibility and librarization of simulation software Computing in Science and Engineering. 17: 38-45. DOI: 10.1109/Mcse.2014.95  0.319
2014 Bardhan JP, Knepley MG. Communication: modeling charge-sign asymmetric solvation free energies with nonlinear boundary conditions. The Journal of Chemical Physics. 141: 131103. PMID 25296776 DOI: 10.1063/1.4897324  0.343
2013 Kreienkamp AB, Liu LY, Minkara MS, Knepley MG, Bardhan JP, Radhakrishnan ML. Analysis of fast boundary-integral approximations for modeling electrostatic contributions of molecular binding. Molecular Based Mathematical Biology (Online). 1: 124-150. PMID 24466561 DOI: 10.2478/Mlbmb-2013-0007  0.381
2013 Knepley MG, Terrel AR. Finite element integration on GPUs Acm Transactions On Mathematical Software. 39. DOI: 10.1145/2427023.2427027  0.654
2013 Brune PR, Knepley MG, Scott LR. Unstructured geometric multigrid in two and three dimensions on complex and graded meshes Siam Journal On Scientific Computing. 35: A173-A191. DOI: 10.1137/110827077  0.455
2013 Aagaard BT, Knepley MG, Williams CA. A domain decomposition approach to implementing fault slip in finite-element models of quasi-static and dynamic crustal deformation Journal of Geophysical Research: Solid Earth. 118: 3059-3079. DOI: 10.1002/Jgrb.50217  0.377
2012 Ketcheson DI, Mandl KT, Ahmadia AJ, Alghamd A, De Luna MQ, Parsan M, Knepley MG, Emmett M. PyClaw: Accessible, extensible, scalable tools for wave propagation problems Siam Journal On Scientific Computing. 34: C210-C231. DOI: 10.1137/110856976  0.376
2012 Bardhan JP, Knepley MG. Computational science and re-discovery: Open-source implementation of ellipsoidal harmonics for problems in potential theory Computational Science and Discovery. 5. DOI: 10.1088/1749-4699/5/1/014006  0.357
2011 Bardhan JP, Knepley MG. Mathematical analysis of the boundary-integral based electrostatics estimation approximation for molecular solvation: exact results for spherical inclusions. The Journal of Chemical Physics. 135: 124107. PMID 21974512 DOI: 10.1063/1.3641485  0.373
2011 May DA, Knepley MG. Optimal, scalable forward models for computing gravity anomalies Geophysical Journal International. 187: 161-177. DOI: 10.1111/J.1365-246X.2011.05167.X  0.421
2011 Yokota R, Bardhan JP, Knepley MG, Barba LA, Hamada T. Biomolecular electrostatics using a fast multipole BEM on up to 512 gpus and a billion unknowns Computer Physics Communications. 182: 1272-1283. DOI: 10.1016/J.Cpc.2011.02.013  0.438
2011 Cruz FA, Knepley MG, Barba LA. PetFMM-A dynamically load-balancing parallel fast multipole library International Journal For Numerical Methods in Engineering. 85: 403-428. DOI: 10.1002/Nme.2972  0.375
2010 Knepley MG, Karpeev DA, Davidovits S, Eisenberg RS, Gillespie D. An efficient algorithm for classical density functional theory in three dimensions: ionic solutions. The Journal of Chemical Physics. 132: 124101. PMID 20370108 DOI: 10.1063/1.3357981  0.322
2010 Yokota R, Barba LA, Knepley MG. PetRBF - A parallel O(N) algorithm for radial basis function interpolation with Gaussians Computer Methods in Applied Mechanics and Engineering. 199: 1793-1804. DOI: 10.1016/J.Cma.2010.02.008  0.354
2009 Bardhan JP, Knepley MG, Anitescu M. Bounding the electrostatic free energies associated with linear continuum models of molecular solvation. The Journal of Chemical Physics. 130: 104108. PMID 19292524 DOI: 10.1063/1.3081148  0.402
2009 Knepley MG, Karpeev DA. Mesh algorithms for PDE with sieve I: Mesh distribution Scientific Programming. 17: 215-230. DOI: 10.1155/2009/948613  0.412
2008 Terrel AR, Scott LR, Knepley MG, Kirby RC. Automated FEM discretizations for the Stokes equation Bit Numerical Mathematics. 48: 389-404. DOI: 10.1007/S10543-008-0178-8  0.661
2007 Katz RF, Knepley MG, Smith B, Spiegelman M, Coon ET. Numerical simulation of geodynamic processes with the Portable Extensible Toolkit for Scientific Computation Physics of the Earth and Planetary Interiors. 163: 52-68. DOI: 10.1016/J.Pepi.2007.04.016  0.513
2005 Kirby RC, Knepley M, Logg A, Scott LR. Optimizing the Evaluation of Finite Element Matrices Siam Journal On Scientific Computing. 27: 741-758. DOI: 10.1137/040607824  0.409
1998 Knepley MG, Sarin V, Sameh AH. Parallel simulation of particulate flows Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 1457: 226-237. DOI: 10.1007/Bfb0018542  0.612
1993 Brown RW, Convery ME, Hotes SA, Knepley MG, Petropoulos LS. Closed strings with low harmonics and kinks. Physical Review D: Particles and Fields. 48: 2548-2562. PMID 10016503 DOI: 10.1103/Physrevd.48.2548  0.304
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