| Year |
Citation |
Score |
| 2024 |
Wang S, Wang M, Ichino L, Boone BA, Zhong Z, Papareddy RK, Lin EK, Yun J, Feng S, Jacobsen SE. MBD2 couples DNA methylation to transposable element silencing during male gametogenesis. Nature Plants. PMID 38225352 DOI: 10.1038/s41477-023-01599-3 |
0.589 |
|
| 2023 |
Wang Z, Castillo-González CM, Zhao C, Tong CY, Li C, Zhong S, Liu Z, Xie K, Zhu J, Wu Z, Peng X, Jacob Y, Michaels SD, Jacobsen SE, Zhang X. H3.1K27me1 loss confers Arabidopsis resistance to Geminivirus by sequestering DNA repair proteins onto host genome. Nature Communications. 14: 7484. PMID 37980416 DOI: 10.1038/s41467-023-43311-1 |
0.375 |
|
| 2023 |
Boone BA, Ichino L, Wang S, Gardiner J, Yun J, Jami-Alahmadi Y, Sha J, Mendoza CP, Steelman BJ, van Aardenne A, Kira-Lucas S, Trentchev I, Wohlschlegel JA, Jacobsen SE. ACD15, ACD21, and SLN regulate the accumulation and mobility of MBD6 to silence genes and transposable elements. Science Advances. 9: eadi9036. PMID 37967186 DOI: 10.1126/sciadv.adi9036 |
0.395 |
|
| 2023 |
Mcdonald BR, Picard C, Brabb IM, Savenkova MI, Schmitz RJ, Jacobsen SE, Duttke SH. Enhancers associated with unstable RNAs are rare in plants. Biorxiv : the Preprint Server For Biology. PMID 37808859 DOI: 10.1101/2023.09.25.559415 |
0.323 |
|
| 2023 |
Boone BA, Ichino L, Wang S, Gardiner J, Yun J, Jami-Alahmadi Y, Sha J, Mendoza CP, Steelman BJ, van Aardenne A, Kira-Lucas S, Trentchev I, Wohlschlegel JA, Jacobsen SE. ACD15, ACD21, and SLN regulate accumulation and mobility of MBD6 to silence genes and transposable elements. Biorxiv : the Preprint Server For Biology. PMID 37662299 DOI: 10.1101/2023.08.23.554494 |
0.367 |
|
| 2023 |
Li Z, Wang M, Zhong Z, Gallego-Bartolomé J, Feng S, Jami-Alahmadi Y, Wang X, Wohlschlegel J, Bischof S, Long JA, Jacobsen SE. The MOM1 complex recruits the RdDM machinery via MORC6 to establish de novo DNA methylation. Nature Communications. 14: 4135. PMID 37438334 DOI: 10.1038/s41467-023-39751-4 |
0.892 |
|
| 2023 |
Harris CJ, Zhong Z, Ichino L, Feng S, Jacobsen SE. H1 restricts euchromatin-associated methylation pathways from heterochromatic encroachment. Biorxiv : the Preprint Server For Biology. PMID 37214879 DOI: 10.1101/2023.05.10.539968 |
0.49 |
|
| 2023 |
Zhong Z, Xue Y, Harris CJ, Wang M, Li Z, Ke Y, Liu M, Zhou J, Jami-Alahmadi Y, Feng S, Wohlschlegel JA, Jacobsen SE. MORC proteins regulate transcription factor binding by mediating chromatin compaction in active chromatin regions. Genome Biology. 24: 96. PMID 37101218 DOI: 10.1186/s13059-023-02939-4 |
0.642 |
|
| 2023 |
Wang M, Zhong Z, Gallego-Bartolomé J, Feng S, Shih YH, Liu M, Zhou J, Richey JC, Ng C, Jami-Alahmadi Y, Wohlschlegel J, Wu K, Jacobsen SE. Arabidopsis TRB proteins function in H3K4me3 demethylation by recruiting JMJ14. Nature Communications. 14: 1736. PMID 36977663 DOI: 10.1038/s41467-023-37263-9 |
0.787 |
|
| 2023 |
Xie G, Du X, Hu H, Li S, Cao X, Jacobsen SE, Du J. Structure and mechanism of the plant RNA polymerase V. Science (New York, N.Y.). eadf8231. PMID 36893216 DOI: 10.1126/science.adf8231 |
0.404 |
|
| 2023 |
Wang M, Zhong Z, Gallego-Bartolomé J, Li Z, Feng S, Kuo HY, Kan RL, Lam H, Richey JC, Tang L, Zhou J, Liu M, Jami-Alahmadi Y, Wohlschlegel J, Jacobsen SE. A gene silencing screen uncovers diverse tools for targeted gene repression in Arabidopsis. Nature Plants. PMID 36879017 DOI: 10.1038/s41477-023-01362-8 |
0.808 |
|
| 2023 |
Li Z, Wang M, Zhong Z, Gallego-Bartolom J, Feng S, Jami-Alahmadi Y, Wang X, Wohlschlegel J, Bischof S, Long JA, Jacobsen SE. The MOM1 complex recruits the RdDM machinery via MORC6 to establish DNA methylation. Biorxiv : the Preprint Server For Biology. PMID 36711532 DOI: 10.1101/2023.01.10.523455 |
0.589 |
|
| 2023 |
Li Z, Zhong Z, Wu Z, Pausch P, Al-Shayeb B, Amerasekera J, Doudna JA, Jacobsen SE. Genome editing in plants using the compact editor CasΦ. Proceedings of the National Academy of Sciences of the United States of America. 120: e2216822120. PMID 36652483 DOI: 10.1073/pnas.2216822120 |
0.408 |
|
| 2023 |
Veley KM, Elliott K, Jensen G, Zhong Z, Feng S, Yoder M, Gilbert KB, Berry JC, Lin ZD, Ghoshal B, Gallego-Bartolomé J, Norton J, Motomura-Wages S, Carrington JC, Jacobsen SE, et al. Improving cassava bacterial blight resistance by editing the epigenome. Nature Communications. 14: 85. PMID 36604425 DOI: 10.1038/s41467-022-35675-7 |
0.831 |
|
| 2022 |
Ichino L, Picard CL, Yun J, Chotai M, Wang S, Lin EK, Papareddy RK, Xue Y, Jacobsen SE. Single-nucleus RNA-seq reveals that MBD5, MBD6, and SILENZIO maintain silencing in the vegetative cell of developing pollen. Cell Reports. 41: 111699. PMID 36417865 DOI: 10.1016/j.celrep.2022.111699 |
0.64 |
|
| 2022 |
Zhong Z, Wang Y, Wang M, Yang F, Thomas QA, Xue Y, Zhang Y, Liu W, Jami-Alahmadi Y, Xu L, Feng S, Marquardt S, Wohlschlegel JA, Ausin I, Jacobsen SE. Histone chaperone ASF1 mediates H3.3-H4 deposition in Arabidopsis. Nature Communications. 13: 6970. PMID 36379930 DOI: 10.1038/s41467-022-34648-0 |
0.854 |
|
| 2022 |
Zhong Z, Feng S, Mansfeld BN, Ke Y, Qi W, Lim YW, Gruissem W, Bart RS, Jacobsen SE. Haplotype-resolved DNA methylome of African cassava genome. Plant Biotechnology Journal. PMID 36318278 DOI: 10.1111/pbi.13955 |
0.352 |
|
| 2022 |
Hernández-García J, Diego-Martin B, Kuo PH, Jami-Alahmadi Y, Vashisht AA, Wohlschlegel J, Jacobsen SE, Blázquez MA, Gallego-Bartolomé J. Comprehensive identification of SWI/SNF complex subunits underpins deep eukaryotic ancestry and reveals new plant components. Communications Biology. 5: 549. PMID 35668117 DOI: 10.1038/s42003-022-03490-x |
0.793 |
|
| 2022 |
Wang Q, Xue Y, Zhang L, Zhong Z, Feng S, Wang C, Xiao L, Yang Z, Harris JC, Wu Z, Zhai J, Yang M, Li S, Jacobsen SE, Du J. A SYBR Gold-based Label-free Dicing Assay. Bio-Protocol. 12: e4382. PMID 35530519 DOI: 10.21769/BioProtoc.4382 |
0.576 |
|
| 2022 |
Potok ME, Zhong Z, Picard CL, Liu Q, Do T, Jacobsen CE, Sakr O, Naranbaatar B, Thilakaratne R, Khnkoyan Z, Purl M, Cheng H, Vervaet H, Feng S, Rayatpisheh S, ... ... Jacobsen SE, et al. The role of ATXR6 expression in modulating genome stability and transposable element repression in . Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 35027454 DOI: 10.1073/pnas.2115570119 |
0.702 |
|
| 2021 |
Kojima-Kita K, Kuramochi-Miyagawa S, Nakayama M, Miyata H, Jacobsen SE, Ikawa M, Koseki H, Nakano T. MORC3, a novel MIWI2 association partner, as an epigenetic regulator of piRNA dependent transposon silencing in male germ cells. Scientific Reports. 11: 20472. PMID 34650118 DOI: 10.1038/s41598-021-98940-7 |
0.547 |
|
| 2021 |
Wang Q, Xue Y, Zhang L, Zhong Z, Feng S, Wang C, Xiao L, Yang Z, Harris CJ, Wu Z, Zhai J, Yang M, Li S, Jacobsen SE, Du J. Mechanism of siRNA production by a plant Dicer-RNA complex in dicing-competent conformation. Science (New York, N.Y.). eabl4546. PMID 34648373 DOI: 10.1126/science.abl4546 |
0.607 |
|
| 2021 |
Xue Y, Zhong Z, Harris CJ, Gallego-Bartolomé J, Wang M, Picard C, Cao X, Hua S, Kwok I, Feng S, Jami-Alahmadi Y, Sha J, Gardiner J, Wohlschlegel J, Jacobsen SE. Arabidopsis MORC proteins function in the efficient establishment of RNA directed DNA methylation. Nature Communications. 12: 4292. PMID 34257299 DOI: 10.1038/s41467-021-24553-3 |
0.878 |
|
| 2021 |
Ichino L, Boone BA, Strauskulage L, Harris CJ, Kaur G, Gladstone MA, Tan M, Feng S, Jami-Alahmadi Y, Duttke SH, Wohlschlegel JA, Cheng X, Redding S, Jacobsen SE. MBD5 and MBD6 couple DNA methylation to gene silencing through the J-domain protein SILENZIO. Science (New York, N.Y.). PMID 34083448 DOI: 10.1126/science.abg6130 |
0.538 |
|
| 2021 |
Ghoshal B, Picard CL, Vong B, Feng S, Jacobsen SE. CRISPR-based targeting of DNA methylation in by a bacterial CG-specific DNA methyltransferase. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34074795 DOI: 10.1073/pnas.2125016118 |
0.572 |
|
| 2021 |
Liu W, Gallego-Bartolomé J, Zhou Y, Zhong Z, Wang M, Wongpalee SP, Gardiner J, Feng S, Kuo PH, Jacobsen SE. Ectopic targeting of CG DNA methylation in Arabidopsis with the bacterial SssI methyltransferase. Nature Communications. 12: 3130. PMID 34035251 DOI: 10.1038/s41467-021-23346-y |
0.88 |
|
| 2021 |
Bourguet P, Picard CL, Yelagandula R, Pélissier T, Lorković ZJ, Feng S, Pouch-Pélissier MN, Schmücker A, Jacobsen SE, Berger F, Mathieu O. The histone variant H2A.W and linker histone H1 co-regulate heterochromatin accessibility and DNA methylation. Nature Communications. 12: 2683. PMID 33976212 DOI: 10.1038/s41467-021-22993-5 |
0.417 |
|
| 2021 |
Zhang Z, Wang H, Wang Y, Xi F, Wang H, Kohnen MV, Gao P, Wei W, Chen K, Liu X, Gao Y, Han X, Hu K, Zhang H, Zhu Q, ... ... Jacobsen SE, et al. Whole genome characterization of chronological age-associated changes in methylome and circular RNAs in moso bamboo (Phyllostachys edulis) from vegetative to floral growth. The Plant Journal : For Cell and Molecular Biology. PMID 33506534 DOI: 10.1111/tpj.15174 |
0.548 |
|
| 2021 |
Zhong Z, Feng S, Duttke SH, Potok ME, Zhang Y, Gallego-Bartolomé J, Liu W, Jacobsen SE. DNA methylation-linked chromatin accessibility affects genomic architecture in . Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33495321 DOI: 10.1073/pnas.2023347118 |
0.887 |
|
| 2020 |
Gardiner J, Zhao JM, Chaffin K, Jacobsen SE. Promoter and Terminator Optimization for DNA Methylation Targeting in . Epigenomes. 4. PMID 34968243 DOI: 10.3390/epigenomes4020009 |
0.575 |
|
| 2020 |
Ghoshal B, Vong B, Picard CL, Feng S, Tam JM, Jacobsen SE. A viral guide RNA delivery system for CRISPR-based transcriptional activation and heritable targeted DNA demethylation in Arabidopsis thaliana. Plos Genetics. 16: e1008983. PMID 33315895 DOI: 10.1371/journal.pgen.1008983 |
0.348 |
|
| 2020 |
Bourguet P, López-González L, Gómez-Zambrano Á, Pélissier T, Hesketh A, Potok ME, Pouch-Pélissier MN, Perez M, Da Ines O, Latrasse D, White CI, Jacobsen SE, Benhamed M, Mathieu O. DNA polymerase epsilon is required for heterochromatin maintenance in Arabidopsis. Genome Biology. 21: 283. PMID 33234150 DOI: 10.1186/s13059-020-02190-1 |
0.511 |
|
| 2020 |
Feng S, Zhong Z, Wang M, Jacobsen SE. Efficient and accurate determination of genome-wide DNA methylation patterns in Arabidopsis thaliana with enzymatic methyl sequencing. Epigenetics & Chromatin. 13: 42. PMID 33028374 DOI: 10.1186/s13072-020-00361-9 |
0.469 |
|
| 2020 |
Pausch P, Al-Shayeb B, Bisom-Rapp E, Tsuchida CA, Li Z, Cress BF, Knott GJ, Jacobsen SE, Banfield JF, Doudna JA. CRISPR-CasΦ from huge phages is a hypercompact genome editor. Science (New York, N.Y.). 369: 333-337. PMID 32675376 DOI: 10.1126/Science.Abb1400 |
0.399 |
|
| 2020 |
Wang Y, Zhong Z, Zhang Y, Xu L, Feng S, Rayatpisheh S, Wohlschlegel JA, Wang Z, Jacobsen SE, Ausin I. NAP1-RELATED PROTEIN1 and 2 negatively regulate H2A.Z abundance in chromatin in Arabidopsis. Nature Communications. 11: 2887. PMID 32513971 DOI: 10.1038/S41467-020-16691-X |
0.816 |
|
| 2020 |
Liu Q, Bischof S, Harris CJ, Zhong Z, Zhan L, Nguyen C, Rashoff A, Barshop WD, Sun F, Feng S, Potok M, Gallego-Bartolome J, Zhai J, Wohlschlegel JA, Carey MF, ... ... Jacobsen SE, et al. The characterization of Mediator 12 and 13 as conditional positive gene regulators in Arabidopsis. Nature Communications. 11: 2798. PMID 32493925 DOI: 10.1038/S41467-020-16651-5 |
0.806 |
|
| 2020 |
Nicolau M, Picault N, Descombin J, Jami-Alahmadi Y, Feng S, Bucher E, Jacobsen SE, Deragon JM, Wohlschlegel J, Moissiard G. The plant mobile domain proteins MAIN and MAIL1 interact with the phosphatase PP7L to regulate gene expression and silence transposable elements in Arabidopsis thaliana. Plos Genetics. 16: e1008324. PMID 32287271 DOI: 10.1371/Journal.Pgen.1008324 |
0.844 |
|
| 2020 |
Venkei ZG, Choi C, Feng S, Chen C, Jacobsen SE, Kim JK, Yamashita YM. A kinesin Klp10A mediates cell cycle-dependent shuttling of Piwi between nucleus and nuage. Plos Genetics. 16: e1008648. PMID 32168327 DOI: 10.1371/Journal.Pgen.1008648 |
0.325 |
|
| 2020 |
Gardiner J, Zhao JM, Chaffin K, Jacobsen SE. Promoter and Terminator Optimization for DNA Methylation Targeting in Arabidopsis Epigenomes. 4: 9. DOI: 10.3390/epigenomes4020009 |
0.578 |
|
| 2019 |
Wongpalee SP, Liu S, Gallego-Bartolomé J, Leitner A, Aebersold R, Liu W, Yen L, Nohales MA, Kuo PH, Vashisht AA, Wohlschlegel JA, Feng S, Kay SA, Zhou ZH, Jacobsen SE. CryoEM structures of Arabidopsis DDR complexes involved in RNA-directed DNA methylation. Nature Communications. 10: 3916. PMID 31477705 DOI: 10.1038/S41467-019-11759-9 |
0.836 |
|
| 2019 |
Kim H, Yen L, Wongpalee SP, Kirshner JA, Mehta N, Xue Y, Johnston JB, Burlingame AL, Kim JK, Loparo JJ, Jacobsen SE. The Gene-Silencing Protein MORC-1 Topologically Entraps DNA and Forms Multimeric Assemblies to Cause DNA Compaction. Molecular Cell. 75: 700-710.e6. PMID 31442422 DOI: 10.1016/J.Molcel.2019.07.032 |
0.63 |
|
| 2019 |
Potok ME, Wang Y, Xu L, Zhong Z, Liu W, Feng S, Naranbaatar B, Rayatpisheh S, Wang Z, Wohlschlegel JA, Ausin I, Jacobsen SE. Arabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition. Nature Communications. 10: 3352. PMID 31350403 DOI: 10.1038/S41467-019-11291-W |
0.839 |
|
| 2019 |
Nohales MA, Liu W, Duffy T, Nozue K, Sawa M, Pruneda-Paz JL, Maloof JN, Jacobsen SE, Kay SA. Multi-level Modulation of Light Signaling by GIGANTEA Regulates Both the Output and Pace of the Circadian Clock. Developmental Cell. PMID 31105011 DOI: 10.1016/J.Devcel.2019.04.030 |
0.627 |
|
| 2019 |
Chen M, Liu Q, Gao SS, Young AE, Jacobsen SE, Tang Y. Genome mining and biosynthesis of a polyketide from a biofertilizer fungus that can facilitate reductive iron assimilation in plant. Proceedings of the National Academy of Sciences of the United States of America. PMID 30842286 DOI: 10.1073/Pnas.1819998116 |
0.653 |
|
| 2019 |
Papikian A, Liu W, Gallego-Bartolomé J, Jacobsen SE. Site-specific manipulation of Arabidopsis loci using CRISPR-Cas9 SunTag systems. Nature Communications. 10: 729. PMID 30760722 DOI: 10.1038/S41467-019-08736-7 |
0.858 |
|
| 2019 |
Gallego-Bartolomé J, Liu W, Kuo PH, Feng S, Ghoshal B, Gardiner J, Zhao JM, Park SY, Chory J, Jacobsen SE. Co-targeting RNA Polymerases IV and V Promotes Efficient De Novo DNA Methylation in Arabidopsis. Cell. PMID 30739798 DOI: 10.1016/J.Cell.2019.01.029 |
0.89 |
|
| 2019 |
Kim H, Yen L, Wongpalee S, Loparo J, Jacobsen S. Caenorhabditis elegans MORC-1 Topologically Traps and Compacts DNA Biophysical Journal. 116: 502a. DOI: 10.1016/J.Bpj.2018.11.2709 |
0.365 |
|
| 2018 |
Chen D, Liu W, Zimmerman J, Pastor WA, Kim R, Hosohama L, Ho J, Aslanyan M, Gell JJ, Jacobsen SE, Clark AT. The TFAP2C-Regulated OCT4 Naive Enhancer Is Involved in Human Germline Formation. Cell Reports. 25: 3591-3602.e5. PMID 30590035 DOI: 10.1016/J.Celrep.2018.12.011 |
0.66 |
|
| 2018 |
Harris CJ, Scheibe M, Wongpalee SP, Liu W, Cornett EM, Vaughan RM, Li X, Chen W, Xue Y, Zhong Z, Yen L, Barshop WD, Rayatpisheh S, Gallego-Bartolome J, Groth M, ... Jacobsen SE, et al. A DNA methylation reader complex that enhances gene transcription. Science (New York, N.Y.). 362: 1182-1186. PMID 30523112 DOI: 10.1126/Science.Aar7854 |
0.888 |
|
| 2018 |
Stoddard CI, Feng S, Campbell MG, Liu W, Wang H, Zhong X, Bernatavichute Y, Cheng Y, Jacobsen SE, Narlikar GJ. A Nucleosome Bridging Mechanism for Activation of a Maintenance DNA Methyltransferase. Molecular Cell. PMID 30415948 DOI: 10.1016/J.Molcel.2018.10.006 |
0.865 |
|
| 2018 |
Yan Y, Liu Q, Jacobsen SE, Tang Y. The impact and prospect of natural product discovery in agriculture: New technologies to explore the diversity of secondary metabolites in plants and microorganisms for applications in agriculture. Embo Reports. PMID 30361392 DOI: 10.15252/Embr.201846824 |
0.549 |
|
| 2018 |
Li X, Harris CJ, Zhong Z, Chen W, Liu R, Jia B, Wang Z, Li S, Jacobsen SE, Du J. Mechanistic insights into plant SUVH family H3K9 methyltransferases and their binding to context-biased non-CG DNA methylation. Proceedings of the National Academy of Sciences of the United States of America. PMID 30150382 DOI: 10.1073/Pnas.1809841115 |
0.648 |
|
| 2018 |
Yan Y, Liu Q, Zang X, Yuan S, Bat-Erdene U, Nguyen C, Gan J, Zhou J, Jacobsen SE, Tang Y. Resistance-gene-directed discovery of a natural-product herbicide with a new mode of action. Nature. PMID 29995859 DOI: 10.1038/S41586-018-0319-4 |
0.6 |
|
| 2018 |
Pastor WA, Liu W, Chen D, Ho J, Kim R, Hunt TJ, Lukianchikov A, Liu X, Polo JM, Jacobsen SE, Clark AT. TFAP2C regulates transcription in human naive pluripotency by opening enhancers. Nature Cell Biology. 20: 553-564. PMID 29695788 DOI: 10.1038/S41556-018-0089-0 |
0.666 |
|
| 2018 |
Orozco LD, Farrell C, Hale C, Rbi L, Rinaldi A, Civelek M, Pan C, Lam L, Montoya D, Edillor C, Seldin M, Mohlke KL, Jacobsen S, Kuusisto J, Laakso M, et al. Epigenome-wide association in adipose tissue from the METSIM cohort. Human Molecular Genetics. PMID 29566149 DOI: 10.1093/Hmg/Ddy093 |
0.312 |
|
| 2018 |
Gallego-Bartolomé J, Gardiner J, Liu W, Papikian A, Ghoshal B, Kuo HY, Zhao JM, Segal DJ, Jacobsen SE. Targeted DNA demethylation of thegenome using the human TET1 catalytic domain. Proceedings of the National Academy of Sciences of the United States of America. PMID 29444862 DOI: 10.1073/Pnas.1716945115 |
0.867 |
|
| 2018 |
Liu W, Duttke SH, Hetzel J, Groth M, Feng S, Gallego-Bartolome J, Zhong Z, Kuo HY, Wang Z, Zhai J, Chory J, Jacobsen SE. RNA-directed DNA methylation involves co-transcriptional small-RNA-guided slicing of polymerase V transcripts in Arabidopsis. Nature Plants. PMID 29379150 DOI: 10.1038/S41477-017-0100-Y |
0.85 |
|
| 2018 |
Zhang Y, Harris CJ, Liu Q, Liu W, Ausin I, Long Y, Xiao L, Feng L, Chen X, Xie Y, Chen X, Zhan L, Feng S, Li JJ, Wang H, ... ... Jacobsen SE, et al. Large-scale comparative epigenomics reveals hierarchical regulation of non-CG methylation in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. PMID 29339507 DOI: 10.1073/Pnas.1716300115 |
0.859 |
|
| 2017 |
Chen D, Liu W, Lukianchikov A, Hancock G, Zimmerman J, Lowe M, Kim R, Galic Z, Irie N, Surani MA, Jacobsen SE, Clark AT. Germline competency of human embryonic stem cells depends on EOMESODERMIN. Biology of Reproduction. PMID 29091993 DOI: 10.1093/Biolre/Iox138 |
0.628 |
|
| 2017 |
Morselli M, Pastor WA, Montanini B, Nee K, Ferrari R, Fu K, Bonora G, Rubbi L, Clark AT, Ottonello S, Jacobsen SE, Pellegrini M. Correction: In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse. Elife. 6. PMID 28858608 DOI: 10.7554/Elife.30948 |
0.61 |
|
| 2017 |
Weiser NE, Yang DX, Feng S, Kalinava N, Brown KC, Khanikar J, Freeberg MA, Snyder MJ, Csankovszki G, Chan RC, Gu SG, Montgomery TA, Jacobsen SE, Kim JK. MORC-1 Integrates Nuclear RNAi and Transgenerational Chromatin Architecture to Promote Germline Immortality. Developmental Cell. 41: 408-423.e7. PMID 28535375 DOI: 10.1016/J.Devcel.2017.04.023 |
0.465 |
|
| 2017 |
Wollmann H, Stroud H, Yelagandula R, Tarutani Y, Jiang D, Jing L, Jamge B, Takeuchi H, Holec S, Nie X, Kakutani T, Jacobsen SE, Berger F. The histone H3 variant H3.3 regulates gene body DNA methylation in Arabidopsis thaliana. Genome Biology. 18: 94. PMID 28521766 DOI: 10.1186/S13059-017-1221-3 |
0.574 |
|
| 2017 |
Johnson LM, Du J, Hale CJ, Bischof S, Feng S, Chodavarapu RK, Zhong X, Marson G, Pellegrini M, Segal DJ, Patel DJ, Jacobsen SE. Corrigendum: SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation. Nature. 543: 136. PMID 28178234 DOI: 10.1038/Nature21398 |
0.808 |
|
| 2017 |
Feng W, Hale CJ, Over RS, Cokus SJ, Jacobsen SE, Michaels SD. Large-scale heterochromatin remodeling linked to overreplication-associated DNA damage. Proceedings of the National Academy of Sciences of the United States of America. 114: 406-411. PMID 28028228 DOI: 10.1073/Pnas.1619774114 |
0.495 |
|
| 2016 |
Lahmy S, Pontier D, Bies-Etheve N, Laudié M, Feng S, Jobet E, Hale CJ, Cooke R, Hakimi MA, Angelov D, Jacobsen SE, Lagrange T. Evidence for ARGONAUTE4-DNA interactions in RNA-directed DNA methylation in plants. Genes & Development. 30: 2565-2570. PMID 27986858 DOI: 10.1101/Gad.289553.116 |
0.58 |
|
| 2016 |
Ausin I, Feng S, Yu C, Liu W, Kuo HY, Jacobsen EL, Zhai J, Gallego-Bartolome J, Wang L, Egertsdotter U, Street NR, Jacobsen SE, Wang H. DNA methylome of the 20-gigabase Norway spruce genome. Proceedings of the National Academy of Sciences of the United States of America. 113: E8106-E8113. PMID 27911846 DOI: 10.1073/Pnas.1618019113 |
0.875 |
|
| 2016 |
Li S, Yen L, Pastor WA, Johnston JB, Du J, Shew CJ, Liu W, Ho J, Stender B, Clark AT, Burlingame AL, Daxinger L, Patel DJ, Jacobsen SE. Mouse MORC3 is a GHKL ATPase that localizes to H3K4me3 marked chromatin. Proceedings of the National Academy of Sciences of the United States of America. 113: E5108-16. PMID 27528681 DOI: 10.1073/Pnas.1609709113 |
0.683 |
|
| 2016 |
Bewick AJ, Ji L, Niederhuth CE, Willing EM, Hofmeister BT, Shi X, Wang L, Lu Z, Rohr NA, Hartwig B, Kiefer C, Deal RB, Schmutz J, Grimwood J, Stroud H, Jacobsen SE, et al. On the origin and evolutionary consequences of gene body DNA methylation. Proceedings of the National Academy of Sciences of the United States of America. 113: 9111-6. PMID 27457936 DOI: 10.1073/Pnas.1604666113 |
0.696 |
|
| 2016 |
Groth M, Moissiard G, Wirtz M, Wang H, Garcia-Salinas C, Ramos-Parra PA, Bischof S, Feng S, Cokus SJ, John A, Smith DC, Zhai J, Hale CJ, Long JA, Hell R, ... Jacobsen SE, et al. MTHFD1 controls DNA methylation in Arabidopsis. Nature Communications. 7: 11640. PMID 27291711 DOI: 10.1038/Ncomms11640 |
0.879 |
|
| 2016 |
Hale CJ, Potok ME, Lopez J, Do T, Liu A, Gallego-Bartolome J, Michaels SD, Jacobsen SE. Identification of Multiple Proteins Coupling Transcriptional Gene Silencing to Genome Stability in Arabidopsis thaliana. Plos Genetics. 12: e1006092. PMID 27253878 DOI: 10.1371/Journal.Pgen.1006092 |
0.829 |
|
| 2016 |
Harris CJ, Husmann D, Liu W, Kasmi FE, Wang H, Papikian A, Pastor WA, Moissiard G, Vashisht AA, Dangl JL, Wohlschlegel JA, Jacobsen SE. Arabidopsis AtMORC4 and AtMORC7 Form Nuclear Bodies and Repress a Large Number of Protein-Coding Genes. Plos Genetics. 12: e1005998. PMID 27171361 DOI: 10.1371/Journal.Pgen.1005998 |
0.892 |
|
| 2016 |
Li S, Yang Z, Du X, Liu R, Wilkinson AW, Gozani O, Jacobsen SE, Patel DJ, Du J. Structural Basis for the Unique Multivalent Readout of Unmodified H3 Tail by Arabidopsis ORC1b BAH-PHD Cassette. Structure (London, England : 1993). 24: 486-94. PMID 26876097 DOI: 10.1016/J.Str.2016.01.004 |
0.435 |
|
| 2016 |
Pastor WA, Chen D, Liu W, Kim R, Sahakyan A, Lukianchikov A, Plath K, Jacobsen SE, Clark AT. Naive Human Pluripotent Cells Feature a Methylation Landscape Devoid of Blastocyst or Germline Memory. Cell Stem Cell. 18: 323-329. PMID 26853856 DOI: 10.1016/J.Stem.2016.01.019 |
0.678 |
|
| 2015 |
Zhang S, Zhou B, Kang Y, Cui X, Liu A, Deleris A, Greenberg MV, Cui X, Qiu Q, Lu F, Wohlschlegel JA, Jacobsen SE, Cao X. C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association. Cell Discovery. 1. PMID 26617990 DOI: 10.1038/Celldisc.2015.3 |
0.83 |
|
| 2015 |
Wang H, Beyene G, Zhai J, Feng S, Fahlgren N, Taylor NJ, Bart R, Carrington JC, Jacobsen SE, Ausin I. CG gene body DNA methylation changes and evolution of duplicated genes in cassava. Proceedings of the National Academy of Sciences of the United States of America. 112: 13729-34. PMID 26483493 DOI: 10.1073/Pnas.1519067112 |
0.874 |
|
| 2015 |
Zhai J, Bischof S, Wang H, Feng S, Lee TF, Teng C, Chen X, Park SY, Liu L, Gallego-Bartolome J, Liu W, Henderson IR, Meyers BC, Ausin I, Jacobsen SE. A One Precursor One siRNA Model for Pol IV-Dependent siRNA Biogenesis. Cell. 163: 445-55. PMID 26451488 DOI: 10.1016/J.Cell.2015.09.032 |
0.863 |
|
| 2015 |
Yazdi PG, Pedersen BA, Taylor JF, Khattab OS, Chen YH, Chen Y, Jacobsen SE, Wang PH. Increasing Nucleosome Occupancy Is Correlated with an Increasing Mutation Rate so Long as DNA Repair Machinery Is Intact. Plos One. 10: e0136574. PMID 26308346 DOI: 10.1371/Journal.Pone.0136574 |
0.47 |
|
| 2015 |
Yazdi PG, Pedersen BA, Taylor JF, Khattab OS, Chen YH, Chen Y, Jacobsen SE, Wang PH. Nucleosome Organization in Human Embryonic Stem Cells. Plos One. 10: e0136314. PMID 26305225 DOI: 10.1371/Journal.Pone.0136314 |
0.587 |
|
| 2015 |
Du J, Johnson LM, Jacobsen SE, Patel DJ. DNA methylation pathways and their crosstalk with histone methylation. Nature Reviews. Molecular Cell Biology. 16: 519-32. PMID 26296162 DOI: 10.1038/Nrm4043 |
0.647 |
|
| 2015 |
Pastor WA, Stroud H, Nee K, Liu W, Pezic D, Manakov S, Lee SA, Moissiard G, Zamudio N, Bourc'his D, Aravin AA, Clark AT, Jacobsen SE. Erratum: MORC1 represses transposable elements in the mouse male germline. Nature Communications. 6: 7604. PMID 26159654 DOI: 10.1038/Ncomms8604 |
0.75 |
|
| 2015 |
Morselli M, Pastor WA, Montanini B, Nee K, Ferrari R, Fu K, Bonora G, Rubbi L, Clark AT, Ottonello S, Jacobsen SE, Pellegrini M. In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse. Elife. 4: e06205. PMID 25848745 DOI: 10.7554/Elife.06205 |
0.645 |
|
| 2015 |
Zhong X, Hale CJ, Nguyen M, Ausin I, Groth M, Hetzel J, Vashisht AA, Henderson IR, Wohlschlegel JA, Jacobsen SE. Domains rearranged methyltransferase3 controls DNA methylation and regulates RNA polymerase V transcript abundance in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 112: 911-6. PMID 25561521 DOI: 10.1073/Pnas.1423603112 |
0.877 |
|
| 2015 |
Song XJ, Kuroha T, Ayano M, Furuta T, Nagai K, Komeda N, Segami S, Miura K, Ogawa D, Kamura T, Suzuki T, Higashiyama T, Yamasaki M, Mori H, Inukai Y, ... ... Jacobsen SE, et al. Rare allele of a previously unidentified histone H4 acetyltransferase enhances grain weight, yield, and plant biomass in rice. Proceedings of the National Academy of Sciences of the United States of America. 112: 76-81. PMID 25535376 DOI: 10.1073/Pnas.1421127112 |
0.37 |
|
| 2014 |
Pastor WA, Stroud H, Nee K, Liu W, Pezic D, Manakov S, Lee SA, Moissiard G, Zamudio N, Bourc'his D, Aravin AA, Clark AT, Jacobsen SE. MORC1 represses transposable elements in the mouse male germline. Nature Communications. 5: 5795. PMID 25503965 DOI: 10.1038/Ncomms6795 |
0.865 |
|
| 2014 |
Groth M, Stroud H, Feng S, Greenberg MV, Vashisht AA, Wohlschlegel JA, Jacobsen SE, Ausin I. SNF2 chromatin remodeler-family proteins FRG1 and -2 are required for RNA-directed DNA methylation. Proceedings of the National Academy of Sciences of the United States of America. 111: 17666-71. PMID 25425661 DOI: 10.1073/Pnas.1420515111 |
0.882 |
|
| 2014 |
Feng S, Cokus SJ, Schubert V, Zhai J, Pellegrini M, Jacobsen SE. Genome-wide Hi-C analyses in wild-type and mutants reveal high-resolution chromatin interactions in Arabidopsis. Molecular Cell. 55: 694-707. PMID 25132175 DOI: 10.1016/J.Molcel.2014.07.008 |
0.588 |
|
| 2014 |
Tsagaratou A, Äijö T, Lio CW, Yue X, Huang Y, Jacobsen SE, Lähdesmäki H, Rao A. Dissecting the dynamic changes of 5-hydroxymethylcytosine in T-cell development and differentiation. Proceedings of the National Academy of Sciences of the United States of America. 111: E3306-15. PMID 25071199 DOI: 10.1073/Pnas.1412327111 |
0.421 |
|
| 2014 |
Du J, Johnson LM, Groth M, Feng S, Hale CJ, Li S, Vashisht AA, Wohlschlegel JA, Patel DJ, Jacobsen SE. Mechanism of DNA methylation-directed histone methylation by KRYPTONITE. Molecular Cell. 55: 495-504. PMID 25018018 DOI: 10.1016/J.Molcel.2014.06.009 |
0.622 |
|
| 2014 |
Yelagandula R, Stroud H, Holec S, Zhou K, Feng S, Zhong X, Muthurajan UM, Nie X, Kawashima T, Groth M, Luger K, Jacobsen SE, Berger F. The histone variant H2A.W defines heterochromatin and promotes chromatin condensation in Arabidopsis. Cell. 158: 98-109. PMID 24995981 DOI: 10.1016/J.Cell.2014.06.006 |
0.743 |
|
| 2014 |
Sequeira-Mendes J, Aragüez I, Peiró R, Mendez-Giraldez R, Zhang X, Jacobsen SE, Bastolla U, Gutierrez C. The Functional Topography of the Arabidopsis Genome Is Organized in a Reduced Number of Linear Motifs of Chromatin States. The Plant Cell. 26: 2351-2366. PMID 24934173 DOI: 10.1105/Tpc.114.124578 |
0.605 |
|
| 2014 |
Zhong X, Du J, Hale CJ, Gallego-Bartolome J, Feng S, Vashisht AA, Chory J, Wohlschlegel JA, Patel DJ, Jacobsen SE. Molecular mechanism of action of plant DRM de novo DNA methyltransferases. Cell. 157: 1050-60. PMID 24855943 DOI: 10.1016/J.Cell.2014.03.056 |
0.88 |
|
| 2014 |
Moissiard G, Bischof S, Husmann D, Pastor WA, Hale CJ, Yen L, Stroud H, Papikian A, Vashisht AA, Wohlschlegel JA, Jacobsen SE. Transcriptional gene silencing by Arabidopsis microrchidia homologues involves the formation of heteromers. Proceedings of the National Academy of Sciences of the United States of America. 111: 7474-9. PMID 24799676 DOI: 10.1073/Pnas.1406611111 |
0.885 |
|
| 2014 |
Huang Y, Chavez L, Chang X, Wang X, Pastor WA, Kang J, Zepeda-Martínez JA, Pape UJ, Jacobsen SE, Peters B, Rao A. Distinct roles of the methylcytosine oxidases Tet1 and Tet2 in mouse embryonic stem cells. Proceedings of the National Academy of Sciences of the United States of America. 111: 1361-6. PMID 24474761 DOI: 10.1073/Pnas.1322921111 |
0.432 |
|
| 2014 |
Johnson LM, Du J, Hale CJ, Bischof S, Feng S, Chodavarapu RK, Zhong X, Marson G, Pellegrini M, Segal DJ, Patel DJ, Jacobsen SE. SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation. Nature. 507: 124-128. PMID 24463519 DOI: 10.1038/Nature12931 |
0.838 |
|
| 2014 |
Stroud H, Do T, Du J, Zhong X, Feng S, Johnson L, Patel DJ, Jacobsen SE. Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis. Nature Structural & Molecular Biology. 21: 64-72. PMID 24336224 DOI: 10.1038/Nsmb.2735 |
0.817 |
|
| 2014 |
Widman N, Feng S, Jacobsen SE, Pellegrini M. Epigenetic differences between shoots and roots in Arabidopsis reveals tissue-specific regulation. Epigenetics. 9: 236-42. PMID 24169618 DOI: 10.4161/Epi.26869 |
0.615 |
|
| 2013 |
Greenberg MV, Deleris A, Hale CJ, Liu A, Feng S, Jacobsen SE. Interplay between active chromatin marks and RNA-directed DNA methylation in Arabidopsis thaliana. Plos Genetics. 9: e1003946. PMID 24244201 DOI: 10.1371/Journal.Pgen.1003946 |
0.883 |
|
| 2013 |
Li-Byarlay H, Li Y, Stroud H, Feng S, Newman TC, Kaneda M, Hou KK, Worley KC, Elsik CG, Wickline SA, Jacobsen SE, Ma J, Robinson GE. RNA interference knockdown of DNA methyl-transferase 3 affects gene alternative splicing in the honey bee. Proceedings of the National Academy of Sciences of the United States of America. 110: 12750-5. PMID 23852726 DOI: 10.1073/Pnas.1310735110 |
0.68 |
|
| 2013 |
Chen PY, Ganguly A, Rubbi L, Orozco LD, Morselli M, Ashraf D, Jaroszewicz A, Feng S, Jacobsen SE, Nakano A, Devaskar SU, Pellegrini M. Intrauterine calorie restriction affects placental DNA methylation and gene expression. Physiological Genomics. 45: 565-76. PMID 23695884 DOI: 10.1152/Physiolgenomics.00034.2013 |
0.383 |
|
| 2013 |
Law JA, Du J, Hale CJ, Feng S, Krajewski K, Palanca AM, Strahl BD, Patel DJ, Jacobsen SE. Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1. Nature. 498: 385-9. PMID 23636332 DOI: 10.1038/Nature12178 |
0.867 |
|
| 2013 |
Stroud H, Ding B, Simon SA, Feng S, Bellizzi M, Pellegrini M, Wang GL, Meyers BC, Jacobsen SE. Plants regenerated from tissue culture contain stable epigenome changes in rice. Elife. 2: e00354. PMID 23539454 DOI: 10.7554/Elife.00354 |
0.488 |
|
| 2013 |
Vincent JJ, Huang Y, Chen PY, Feng S, Calvopiña JH, Nee K, Lee SA, Le T, Yoon AJ, Faull K, Fan G, Rao A, Jacobsen SE, Pellegrini M, Clark AT. Stage-specific roles for tet1 and tet2 in DNA demethylation in primordial germ cells. Cell Stem Cell. 12: 470-8. PMID 23415914 DOI: 10.1016/J.Stem.2013.01.016 |
0.566 |
|
| 2013 |
Xu Y, Wang Y, Stroud H, Gu X, Sun B, Gan ES, Ng KH, Jacobsen SE, He Y, Ito T. A matrix protein silences transposons and repeats through interaction with retinoblastoma-associated proteins. Current Biology : Cb. 23: 345-50. PMID 23394836 DOI: 10.1016/J.Cub.2013.01.030 |
0.735 |
|
| 2013 |
Stroud H, Greenberg MV, Feng S, Bernatavichute YV, Jacobsen SE. Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome. Cell. 152: 352-64. PMID 23313553 DOI: 10.1016/J.Cell.2012.10.054 |
0.88 |
|
| 2012 |
Deleris A, Stroud H, Bernatavichute Y, Johnson E, Klein G, Schubert D, Jacobsen SE. Loss of the DNA methyltransferase MET1 Induces H3K9 hypermethylation at PcG target genes and redistribution of H3K27 trimethylation to transposons in Arabidopsis thaliana. Plos Genetics. 8: e1003062. PMID 23209430 DOI: 10.1371/Journal.Pgen.1003062 |
0.881 |
|
| 2012 |
Caro E, Stroud H, Greenberg MV, Bernatavichute YV, Feng S, Groth M, Vashisht AA, Wohlschlegel J, Jacobsen SE. The SET-domain protein SUVR5 mediates H3K9me2 deposition and silencing at stimulus response genes in a DNA methylation-independent manner. Plos Genetics. 8: e1002995. PMID 23071452 DOI: 10.1371/Journal.Pgen.1002995 |
0.883 |
|
| 2012 |
Du J, Zhong X, Bernatavichute YV, Stroud H, Feng S, Caro E, Vashisht AA, Terragni J, Chin HG, Tu A, Hetzel J, Wohlschlegel JA, Pradhan S, Patel DJ, Jacobsen SE. Dual binding of chromomethylase domains to H3K9me2-containing nucleosomes directs DNA methylation in plants. Cell. 151: 167-80. PMID 23021223 DOI: 10.1016/J.Cell.2012.07.034 |
0.872 |
|
| 2012 |
Colomé-Tatché M, Cortijo S, Wardenaar R, Morgado L, Lahouze B, Sarazin A, Etcheverry M, Martin A, Feng S, Duvernois-Berthet E, Labadie K, Wincker P, Jacobsen SE, Jansen RC, Colot V, et al. Features of the Arabidopsis recombination landscape resulting from the combined loss of sequence variation and DNA methylation. Proceedings of the National Academy of Sciences of the United States of America. 109: 16240-5. PMID 22988127 DOI: 10.1073/Pnas.1212955109 |
0.538 |
|
| 2012 |
Zhong X, Hale CJ, Law JA, Johnson LM, Feng S, Tu A, Jacobsen SE. DDR complex facilitates global association of RNA polymerase V to promoters and evolutionarily young transposons. Nature Structural & Molecular Biology. 19: 870-5. PMID 22864289 DOI: 10.1038/Nsmb.2354 |
0.856 |
|
| 2012 |
Stroud H, Hale CJ, Feng S, Caro E, Jacob Y, Michaels SD, Jacobsen SE. DNA methyltransferases are required to induce heterochromatic re-replication in Arabidopsis. Plos Genetics. 8: e1002808. PMID 22792077 DOI: 10.1371/Journal.Pgen.1002808 |
0.652 |
|
| 2012 |
Chodavarapu RK, Feng S, Ding B, Simon SA, Lopez D, Jia Y, Wang GL, Meyers BC, Jacobsen SE, Pellegrini M. Transcriptome and methylome interactions in rice hybrids. Proceedings of the National Academy of Sciences of the United States of America. 109: 12040-5. PMID 22778444 DOI: 10.1073/Pnas.1209297109 |
0.417 |
|
| 2012 |
Berger F, Cao X, Chandler V, Dennis L, Martienssen R, Meyers B, Pikaard C, Peacock J, Richards E, Wagner D, Weigel D, Colot V, Deal R, Dean C, Ecker J, ... ... Jacobsen S, et al. Reading the second code: Mapping epigenomes to understand plant growth, development, and adaptation to the environment Plant Cell. 24: 2257-2261. PMID 22751210 DOI: 10.1105/tpc.112.100636 |
0.623 |
|
| 2012 |
Talbert PB, Ahmad K, Almouzni G, Ausió J, Berger F, Bhalla PL, Bonner WM, Cande WZ, Chadwick BP, Chan SW, Cross GA, Cui L, Dimitrov SI, Doenecke D, Eirin-López JM, ... ... Jacobsen SE, et al. A unified phylogeny-based nomenclature for histone variants. Epigenetics & Chromatin. 5: 7. PMID 22650316 DOI: 10.1186/1756-8935-5-7 |
0.688 |
|
| 2012 |
Ausin I, Greenberg MV, Simanshu DK, Hale CJ, Vashisht AA, Simon SA, Lee TF, Feng S, Española SD, Meyers BC, Wohlschlegel JA, Patel DJ, Jacobsen SE. INVOLVED IN DE NOVO 2-containing complex involved in RNA-directed DNA methylation in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 109: 8374-81. PMID 22592791 DOI: 10.1073/Pnas.1206638109 |
0.889 |
|
| 2012 |
Kinoshita T, Jacobsen SE. Opening the door to epigenetics in PCP. Plant & Cell Physiology. 53: 763-5. PMID 22566217 DOI: 10.1093/Pcp/Pcs061 |
0.566 |
|
| 2012 |
Moissiard G, Cokus SJ, Cary J, Feng S, Billi AC, Stroud H, Husmann D, Zhan Y, Lajoie BR, McCord RP, Hale CJ, Feng W, Michaels SD, Frand AR, Pellegrini M, ... Jacobsen SE, et al. MORC family ATPases required for heterochromatin condensation and gene silencing. Science (New York, N.Y.). 336: 1448-51. PMID 22555433 DOI: 10.1126/Science.1221472 |
0.869 |
|
| 2012 |
Pontvianne F, Blevins T, Chandrasekhara C, Feng W, Stroud H, Jacobsen SE, Michaels SD, Pikaard CS. Histone methyltransferases regulating rRNA gene dose and dosage control in Arabidopsis. Genes & Development. 26: 945-57. PMID 22549957 DOI: 10.1101/Gad.182865.111 |
0.536 |
|
| 2012 |
Stroud H, Otero S, Desvoyes B, Ramírez-Parra E, Jacobsen SE, Gutierrez C. Genome-wide analysis of histone H3.1 and H3.3 variants in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. 109: 5370-5. PMID 22431625 DOI: 10.1073/Pnas.1203145109 |
0.483 |
|
| 2012 |
Foret S, Kucharski R, Pellegrini M, Feng S, Jacobsen SE, Robinson GE, Maleszka R. DNA methylation dynamics, metabolic fluxes, gene splicing, and alternative phenotypes in honey bees. Proceedings of the National Academy of Sciences of the United States of America. 109: 4968-73. PMID 22416128 DOI: 10.1073/Pnas.1202392109 |
0.592 |
|
| 2012 |
Ausin I, Greenberg MV, Li CF, Jacobsen SE. The splicing factor SR45 affects the RNA-directed DNA methylation pathway in Arabidopsis. Epigenetics. 7: 29-33. PMID 22274613 DOI: 10.4161/Epi.7.1.18782 |
0.878 |
|
| 2012 |
Hale CJ, Jacobsen SE. Plant biology: Equal-parenting policy. Nature. 482: 42-4. PMID 22266937 DOI: 10.1038/Nature10869 |
0.354 |
|
| 2011 |
Law JA, Vashisht AA, Wohlschlegel JA, Jacobsen SE. SHH1, a homeodomain protein required for DNA methylation, as well as RDR2, RDM4, and chromatin remodeling factors, associate with RNA polymerase IV. Plos Genetics. 7: e1002195. PMID 21811420 DOI: 10.1371/Journal.Pgen.1002195 |
0.845 |
|
| 2011 |
Chen PY, Feng S, Joo JWJ, Jacobsen SE, Pellegrini M. A comparative analysis of DNA methylation across human embryonic stem cell lines Genome Biology. 12. PMID 21733148 DOI: 10.1186/gb-2011-12-7-r62 |
0.456 |
|
| 2011 |
Stroud H, Feng S, Morey Kinney S, Pradhan S, Jacobsen SE. 5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cells. Genome Biology. 12: R54. PMID 21689397 DOI: 10.1186/Gb-2011-12-6-R54 |
0.327 |
|
| 2011 |
Kinney SM, Chin HG, Vaisvila R, Bitinaite J, Zheng Y, Estève PO, Feng S, Stroud H, Jacobsen SE, Pradhan S. Tissue-specific distribution and dynamic changes of 5-hydroxymethylcytosine in mammalian genomes. The Journal of Biological Chemistry. 286: 24685-93. PMID 21610077 DOI: 10.1074/Jbc.M110.217083 |
0.503 |
|
| 2011 |
Feng S, Rubbi L, Jacobsen SE, Pellegrini M. Determining DNA methylation profiles using sequencing. Methods in Molecular Biology (Clifton, N.J.). 733: 223-38. PMID 21431774 DOI: 10.1007/978-1-61779-089-8_16 |
0.601 |
|
| 2011 |
Costas C, de la Paz Sanchez M, Stroud H, Yu Y, Oliveros JC, Feng S, Benguria A, López-Vidriero I, Zhang X, Solano R, Jacobsen SE, Gutierrez C. Genome-wide mapping of Arabidopsis thaliana origins of DNA replication and their associated epigenetic marks. Nature Structural & Molecular Biology. 18: 395-400. PMID 21297636 DOI: 10.1038/Nsmb.1988 |
0.608 |
|
| 2011 |
Rajakumara E, Law JA, Simanshu DK, Voigt P, Johnson LM, Reinberg D, Patel DJ, Jacobsen SE. A dual flip-out mechanism for 5mC recognition by the Arabidopsis SUVH5 SRA domain and its impact on DNA methylation and H3K9 dimethylation in vivo. Genes & Development. 25: 137-52. PMID 21245167 DOI: 10.1101/Gad.1980311 |
0.841 |
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| 2011 |
Yuan B, Zhang J, Wang H, Xiong L, Cai Q, Wang T, Jacobsen S, Pradhan S, Wang Y. 6-Thioguanine reactivates epigenetically silenced genes in acute lymphoblastic leukemia cells by facilitating proteasome-mediated degradation of DNMT1. Cancer Research. 71: 1904-11. PMID 21239472 DOI: 10.1158/0008-5472.Can-10-3430 |
0.472 |
|
| 2011 |
Feng S, Jacobsen SE. Epigenetic modifications in plants: an evolutionary perspective. Current Opinion in Plant Biology. 14: 179-86. PMID 21233005 DOI: 10.1016/J.Pbi.2010.12.002 |
0.525 |
|
| 2011 |
Greenberg MV, Ausin I, Chan SW, Cokus SJ, Cuperus JT, Feng S, Law JA, Chu C, Pellegrini M, Carrington JC, Jacobsen SE. Identification of genes required for de novo DNA methylation in Arabidopsis. Epigenetics. 6: 344-54. PMID 21150311 DOI: 10.4161/Epi.6.3.14242 |
0.879 |
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| 2011 |
Lindroth AM, Shultis D, Jasencakova Z, Fuchs J, Johnson L, Schubert D, Patnaik D, Pradhan S, Goodrich J, Schubert I, Jenuwein T, Khorasanizadeh S, Jacobsen SE. Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMETHYLASE3, (vol 23, pg 4286, 2004) The Embo Journal. 30: 1874-1874. DOI: 10.1038/Emboj.2011.130 |
0.478 |
|
| 2010 |
Henderson IR, Deleris A, Wong W, Zhong X, Chin HG, Horwitz GA, Kelly KA, Pradhan S, Jacobsen SE. The de novo cytosine methyltransferase DRM2 requires intact UBA domains and a catalytically mutated paralog DRM3 during RNA-directed DNA methylation in Arabidopsis thaliana. Plos Genetics. 6: e1001182. PMID 21060858 DOI: 10.1371/Journal.Pgen.1001182 |
0.882 |
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| 2010 |
Deleris A, Greenberg MV, Ausin I, Law RW, Moissiard G, Schubert D, Jacobsen SE. Involvement of a Jumonji-C domain-containing histone demethylase in DRM2-mediated maintenance of DNA methylation. Embo Reports. 11: 950-5. PMID 21052090 DOI: 10.1038/Embor.2010.158 |
0.871 |
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| 2010 |
Feng S, Jacobsen SE, Reik W. Epigenetic reprogramming in plant and animal development. Science (New York, N.Y.). 330: 622-7. PMID 21030646 DOI: 10.1126/Science.1190614 |
0.617 |
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| 2010 |
Jacob Y, Stroud H, Leblanc C, Feng S, Zhuo L, Caro E, Hassel C, Gutierrez C, Michaels SD, Jacobsen SE. Regulation of heterochromatic DNA replication by histone H3 lysine 27 methyltransferases. Nature. 466: 987-91. PMID 20631708 DOI: 10.1038/Nature09290 |
0.526 |
|
| 2010 |
Chodavarapu RK, Feng S, Bernatavichute YV, Chen PY, Stroud H, Yu Y, Hetzel JA, Kuo F, Kim J, Cokus SJ, Casero D, Bernal M, Huijser P, Clark AT, Krämer U, ... ... Jacobsen SE, et al. Relationship between nucleosome positioning and DNA methylation. Nature. 466: 388-92. PMID 20512117 DOI: 10.1038/Nature09147 |
0.881 |
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| 2010 |
Law JA, Ausin I, Johnson LM, Vashisht AA, Zhu JK, Wohlschlegel JA, Jacobsen SE. A protein complex required for polymerase V transcripts and RNA- directed DNA methylation in Arabidopsis. Current Biology : Cb. 20: 951-6. PMID 20409711 DOI: 10.1016/J.Cub.2010.03.062 |
0.884 |
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| 2010 |
Feng S, Cokus SJ, Zhang X, Chen PY, Bostick M, Goll MG, Hetzel J, Jain J, Strauss SH, Halpern ME, Ukomadu C, Sadler KC, Pradhan S, Pellegrini M, Jacobsen SE. Conservation and divergence of methylation patterning in plants and animals. Proceedings of the National Academy of Sciences of the United States of America. 107: 8689-94. PMID 20395551 DOI: 10.1073/Pnas.1002720107 |
0.681 |
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| 2010 |
Law JA, Jacobsen SE. Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nature Reviews. Genetics. 11: 204-20. PMID 20142834 DOI: 10.1038/Nrg2719 |
0.859 |
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| 2010 |
Popp C, Dean W, Feng S, Cokus SJ, Andrews S, Pellegrini M, Jacobsen SE, Reik W. Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency. Nature. 463: 1101-5. PMID 20098412 DOI: 10.1038/Nature08829 |
0.599 |
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| 2010 |
Henderson IR, Chan SR, Cao X, Johnson L, Jacobsen SE. Accurate sodium bisulfite sequencing in plants. Epigenetics. 5: 47-9. PMID 20081358 DOI: 10.4161/Epi.5.1.10560 |
0.814 |
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| 2009 |
Ausin I, Mockler TC, Chory J, Jacobsen SE. IDN1 and IDN2 are required for de novo DNA methylation in Arabidopsis thaliana. Nature Structural & Molecular Biology. 16: 1325-7. PMID 19915591 DOI: 10.1038/Nsmb.1690 |
0.877 |
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| 2009 |
Pradhan S, Chin HG, Estève PO, Jacobsen SE. SET7/9 mediated methylation of non-histone proteins in mammalian cells. Epigenetics. 4: 383-7. PMID 19684477 DOI: 10.4161/Epi.4.6.9450 |
0.568 |
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| 2009 |
Miura K, Agetsuma M, Kitano H, Yoshimura A, Matsuoka M, Jacobsen SE, Ashikari M. A metastable DWARF1 epigenetic mutant affecting plant stature in rice. Proceedings of the National Academy of Sciences of the United States of America. 106: 11218-23. PMID 19541604 DOI: 10.1073/Pnas.0901942106 |
0.565 |
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| 2009 |
Zhang X, Bernatavichute YV, Cokus S, Pellegrini M, Jacobsen SE. Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana. Genome Biology. 10: R62. PMID 19508735 DOI: 10.1186/Gb-2009-10-6-R62 |
0.848 |
|
| 2009 |
Jacob Y, Feng S, LeBlanc CA, Bernatavichute YV, Stroud H, Cokus S, Johnson LM, Pellegrini M, Jacobsen SE, Michaels SD. ATXR5 and ATXR6 are H3K27 monomethyltransferases required for chromatin structure and gene silencing. Nature Structural & Molecular Biology. 16: 763-8. PMID 19503079 DOI: 10.1038/Nsmb.1611 |
0.884 |
|
| 2009 |
Widman N, Jacobsen SE, Pellegrini M. Determining the conservation of DNA methylation in Arabidopsis. Epigenetics. 4: 119-24. PMID 19384058 DOI: 10.4161/Epi.4.2.8214 |
0.601 |
|
| 2009 |
Law JA, Jacobsen SE. Molecular biology. Dynamic DNA methylation. Science (New York, N.Y.). 323: 1568-9. PMID 19299607 DOI: 10.1126/Science.1172782 |
0.819 |
|
| 2009 |
Estève PO, Chin HG, Benner J, Feehery GR, Samaranayake M, Horwitz GA, Jacobsen SE, Pradhan S. Regulation of DNMT1 stability through SET7-mediated lysine methylation in mammalian cells. Proceedings of the National Academy of Sciences of the United States of America. 106: 5076-81. PMID 19282482 DOI: 10.1073/Pnas.0810362106 |
0.548 |
|
| 2009 |
Kim JK, Estève PO, Jacobsen SE, Pradhan S. UHRF1 binds G9a and participates in p21 transcriptional regulation in mammalian cells. Nucleic Acids Research. 37: 493-505. PMID 19056828 DOI: 10.1093/Nar/Gkn961 |
0.455 |
|
| 2008 |
Meyers BC, Axtell MJ, Bartel B, Bartel DP, Baulcombe D, Bowman JL, Cao X, Carrington JC, Chen X, Green PJ, Griffiths-Jones S, Jacobsen SE, Mallory AC, Martienssen RA, Poethig RS, et al. Criteria for annotation of plant MicroRNAs. The Plant Cell. 20: 3186-90. PMID 19074682 DOI: 10.1105/Tpc.108.064311 |
0.787 |
|
| 2008 |
Johnson LM, Law JA, Khattar A, Henderson IR, Jacobsen SE. SRA-domain proteins required for DRM2-mediated de novo DNA methylation. Plos Genetics. 4: e1000280. PMID 19043555 DOI: 10.1371/Journal.Pgen.1000280 |
0.879 |
|
| 2008 |
Bernatavichute YV, Zhang X, Cokus S, Pellegrini M, Jacobsen SE. Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana. Plos One. 3: e3156. PMID 18776934 DOI: 10.1371/Journal.Pone.0003156 |
0.872 |
|
| 2008 |
Hashimoto H, Horton JR, Zhang X, Bostick M, Jacobsen SE, Cheng X. The SRA domain of UHRF1 flips 5-methylcytosine out of the DNA helix. Nature. 455: 826-9. PMID 18772888 DOI: 10.1038/Nature07280 |
0.641 |
|
| 2008 |
Henderson IR, Jacobsen SE. Sequencing sliced ends reveals microRNA targets. Nature Biotechnology. 26: 881-2. PMID 18688239 DOI: 10.1038/Nbt0808-881 |
0.494 |
|
| 2008 |
Kraft E, Bostick M, Jacobsen SE, Callis J. ORTH/VIM proteins that regulate DNA methylation are functional ubiquitin E3 ligases. The Plant Journal : For Cell and Molecular Biology. 56: 704-15. PMID 18643997 DOI: 10.1111/J.1365-313X.2008.03631.X |
0.557 |
|
| 2008 |
Henderson IR, Jacobsen SE. Tandem repeats upstream of the Arabidopsis endogene SDC recruit non-CG DNA methylation and initiate siRNA spreading. Genes & Development. 22: 1597-606. PMID 18559476 DOI: 10.1101/Gad.1667808 |
0.784 |
|
| 2008 |
Jones AM, Chory J, Dangl JL, Estelle M, Jacobsen SE, Meyerowitz EM, Nordborg M, Weigel D. The impact of Arabidopsis on human health: diversifying our portfolio. Cell. 133: 939-43. PMID 18555767 DOI: 10.1016/J.Cell.2008.05.040 |
0.602 |
|
| 2008 |
Cokus SJ, Feng S, Zhang X, Chen Z, Merriman B, Haudenschild CD, Pradhan S, Nelson SF, Pellegrini M, Jacobsen SE. Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature. 452: 215-9. PMID 18278030 DOI: 10.1038/Nature06745 |
0.654 |
|
| 2008 |
Li CF, Henderson IR, Song L, Fedoroff N, Lagrange T, Jacobsen SE. Dynamic regulation of ARGONAUTE4 within multiple nuclear bodies in Arabidopsis thaliana. Plos Genetics. 4: e27. PMID 18266474 DOI: 10.1371/Journal.Pgen.0040027 |
0.866 |
|
| 2008 |
Oh JJ, Boctor BN, Jimenez CA, Lopez R, Koegel AK, Taschereau EO, Phan DT, Jacobsen SE, Slamon DJ. Promoter methylation study of the H37/RBM5 tumor suppressor gene from the 3p21.3 human lung cancer tumor suppressor locus. Human Genetics. 123: 55-64. PMID 18038152 DOI: 10.1007/S00439-007-0449-5 |
0.358 |
|
| 2007 |
El-Shami M, Pontier D, Lahmy S, Braun L, Picart C, Vega D, Hakimi MA, Jacobsen SE, Cooke R, Lagrange T. Reiterated WG/GW motifs form functionally and evolutionarily conserved ARGONAUTE-binding platforms in RNAi-related components. Genes & Development. 21: 2539-44. PMID 17938239 DOI: 10.1101/Gad.451207 |
0.461 |
|
| 2007 |
Zhang X, Germann S, Blus BJ, Khorasanizadeh S, Gaudin V, Jacobsen SE. The Arabidopsis LHP1 protein colocalizes with histone H3 Lys27 trimethylation. Nature Structural & Molecular Biology. 14: 869-71. PMID 17676062 DOI: 10.1038/Nsmb1283 |
0.538 |
|
| 2007 |
Bostick M, Kim JK, Estève PO, Clark A, Pradhan S, Jacobsen SE. UHRF1 plays a role in maintaining DNA methylation in mammalian cells. Science (New York, N.Y.). 317: 1760-4. PMID 17673620 DOI: 10.1126/Science.1147939 |
0.623 |
|
| 2007 |
Henderson IR, Jacobsen SE. Epigenetic inheritance in plants. Nature. 447: 418-24. PMID 17522675 DOI: 10.1038/Nature05917 |
0.732 |
|
| 2007 |
Zhang X, Clarenz O, Cokus S, Bernatavichute YV, Pellegrini M, Goodrich J, Jacobsen SE. Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis. Plos Biology. 5: e129. PMID 17439305 DOI: 10.1371/Journal.Pbio.0050129 |
0.849 |
|
| 2007 |
Zhang X, Henderson IR, Lu C, Green PJ, Jacobsen SE. Role of RNA polymerase IV in plant small RNA metabolism. Proceedings of the National Academy of Sciences of the United States of America. 104: 4536-41. PMID 17360559 DOI: 10.1073/Pnas.0611456104 |
0.653 |
|
| 2007 |
Johnson LM, Bostick M, Zhang X, Kraft E, Henderson I, Callis J, Jacobsen SE. The SRA methyl-cytosine-binding domain links DNA and histone methylation. Current Biology : Cb. 17: 379-84. PMID 17239600 DOI: 10.1016/J.Cub.2007.01.009 |
0.781 |
|
| 2006 |
Zhang X, Jacobsen SE. Genetic analyses of DNA methyltransferases in Arabidopsis thaliana. Cold Spring Harbor Symposia On Quantitative Biology. 71: 439-47. PMID 17381326 DOI: 10.1101/sqb.2006.71.047 |
0.679 |
|
| 2006 |
Chan SW, Zhang X, Bernatavichute YV, Jacobsen SE. Two-step recruitment of RNA-directed DNA methylation to tandem repeats. Plos Biology. 4: e363. PMID 17105345 DOI: 10.1371/Journal.Pbio.0040363 |
0.892 |
|
| 2006 |
Peng P, Chan SW, Shah GA, Jacobsen SE. Plant genetics: increased outcrossing in hothead mutants. Nature. 443: E8; discussion E8-9. PMID 17006468 DOI: 10.1038/nature05251 |
0.537 |
|
| 2006 |
Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC. MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant. Genome Research. 16: 1276-88. PMID 16954541 DOI: 10.1101/Gr.5530106 |
0.542 |
|
| 2006 |
Zhang X, Yazaki J, Sundaresan A, Cokus S, Chan SW, Chen H, Henderson IR, Shinn P, Pellegrini M, Jacobsen SE, Ecker JR. Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis. Cell. 126: 1189-201. PMID 16949657 DOI: 10.1016/J.Cell.2006.08.003 |
0.84 |
|
| 2006 |
Li CF, Pontes O, El-Shami M, Henderson IR, Bernatavichute YV, Chan SW, Lagrange T, Pikaard CS, Jacobsen SE. An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana. Cell. 126: 93-106. PMID 16839879 DOI: 10.1016/J.Cell.2006.05.032 |
0.844 |
|
| 2006 |
Pontes O, Li CF, Costa Nunes P, Haag J, Ream T, Vitins A, Jacobsen SE, Pikaard CS. The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center. Cell. 126: 79-92. PMID 16839878 DOI: 10.1016/J.Cell.2006.05.031 |
0.827 |
|
| 2006 |
Chan SW, Henderson IR, Zhang X, Shah G, Chien JS, Jacobsen SE. RNAi, DRD1, and histone methylation actively target developmentally important non-CG DNA methylation in arabidopsis. Plos Genetics. 2: e83. PMID 16741558 DOI: 10.1371/Journal.Pgen.0020083 |
0.853 |
|
| 2006 |
Henderson IR, Zhang X, Lu C, Johnson L, Meyers BC, Green PJ, Jacobsen SE. Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning. Nature Genetics. 38: 721-5. PMID 16699516 DOI: 10.1038/Ng1804 |
0.739 |
|
| 2006 |
Sung S, He Y, Eshoo TW, Tamada Y, Johnson L, Nakahigashi K, Goto K, Jacobsen SE, Amasino RM. Epigenetic maintenance of the vernalized state in Arabidopsis thaliana requires LIKE HETEROCHROMATIN PROTEIN 1. Nature Genetics. 38: 706-10. PMID 16682972 DOI: 10.1038/Ng1795 |
0.378 |
|
| 2006 |
Mylne JS, Barrett L, Tessadori F, Mesnage S, Johnson L, Bernatavichute YV, Jacobsen SE, Fransz P, Dean C. LHP1, the Arabidopsis homologue of HETEROCHROMATIN PROTEIN1, is required for epigenetic silencing of FLC. Proceedings of the National Academy of Sciences of the United States of America. 103: 5012-7. PMID 16549797 DOI: 10.1073/Pnas.0507427103 |
0.845 |
|
| 2006 |
Chin HG, Patnaik D, Estève PO, Jacobsen SE, Pradhan S. Catalytic properties and kinetic mechanism of human recombinant Lys-9 histone H3 methyltransferase SUV39H1: participation of the chromodomain in enzymatic catalysis. Biochemistry. 45: 3272-84. PMID 16519522 DOI: 10.1021/Bi051997R |
0.382 |
|
| 2006 |
Goll MG, Kirpekar F, Maggert KA, Yoder JA, Hsieh CL, Zhang X, Golic KG, Jacobsen SE, Bestor TH. Methylation of tRNAAsp by the DNA methyltransferase homolog Dnmt2. Science (New York, N.Y.). 311: 395-8. PMID 16424344 DOI: 10.1126/Science.1120976 |
0.695 |
|
| 2005 |
Tran RK, Zilberman D, de Bustos C, Ditt RF, Henikoff JG, Lindroth AM, Delrow J, Boyle T, Kwong S, Bryson TD, Jacobsen SE, Henikoff S. Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis. Genome Biology. 6: R90. PMID 16277745 DOI: 10.1186/Gb-2005-6-11-R90 |
0.884 |
|
| 2005 |
Chan SW, Henderson IR, Jacobsen SE. Gardening the genome: DNA methylation in Arabidopsis thaliana. Nature Reviews. Genetics. 6: 351-60. PMID 15861207 DOI: 10.1038/Nrg1601 |
0.841 |
|
| 2005 |
Zemach A, Li Y, Wayburn B, Ben-Meir H, Kiss V, Avivi Y, Kalchenko V, Jacobsen SE, Grafi G. DDM1 binds Arabidopsis methyl-CpG binding domain proteins and affects their subnuclear localization. The Plant Cell. 17: 1549-58. PMID 15805479 DOI: 10.1105/Tpc.105.031567 |
0.811 |
|
| 2005 |
Tran RK, Henikoff JG, Zilberman D, Ditt RF, Jacobsen SE, Henikoff S. DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes. Current Biology : Cb. 15: 154-9. PMID 15668172 DOI: 10.1016/J.Cub.2005.01.008 |
0.829 |
|
| 2005 |
Mockler TC, Chan S, Sundaresan A, Chen H, Jacobsen SE, Ecker JR. Applications of DNA tiling arrays for whole-genome analysis. Genomics. 85: 1-15. PMID 15607417 DOI: 10.1016/J.Ygeno.2004.10.005 |
0.615 |
|
| 2005 |
Chan SW-, Henderson IR, Jacobsen SE. Erratum: Gardening The Genome: DNA Methylation in Arabidopsis thaliana Nature Reviews Genetics. 6: 590-590. DOI: 10.1038/Nrg1664 |
0.592 |
|
| 2005 |
Mockler TC, Chan S, Sundaresan A, Chen H, Jacobsen SE, Ecker JR. Corrigendum to ‘‘Applications of DNA tiling arrays for whole-genome analysis’’ [Genomics 85 (2005) 1–15] Genomics. 85: 655. DOI: 10.1016/J.Ygeno.2005.01.004 |
0.643 |
|
| 2004 |
Johnson L, Mollah S, Garcia BA, Muratore TL, Shabanowitz J, Hunt DF, Jacobsen SE. Mass spectrometry analysis of Arabidopsis histone H3 reveals distinct combinations of post-translational modifications. Nucleic Acids Research. 32: 6511-8. PMID 15598823 DOI: 10.1093/Nar/Gkh992 |
0.451 |
|
| 2004 |
Patnaik D, Chin HG, Estève PO, Benner J, Jacobsen SE, Pradhan S. Substrate specificity and kinetic mechanism of mammalian G9a histone H3 methyltransferase. The Journal of Biological Chemistry. 279: 53248-58. PMID 15485804 DOI: 10.1074/Jbc.M409604200 |
0.339 |
|
| 2004 |
Lindroth AM, Shultis D, Jasencakova Z, Fuchs J, Johnson L, Schubert D, Patnaik D, Pradhan S, Goodrich J, Schubert I, Jenuwein T, Khorasanizadeh S, Jacobsen SE. Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMETHYLASE3. The Embo Journal. 23: 4286-96. PMID 15457214 DOI: 10.1038/Sj.Emboj.7600430 |
0.792 |
|
| 2004 |
Morris KV, Chan SW, Jacobsen SE, Looney DJ. Small interfering RNA-induced transcriptional gene silencing in human cells. Science (New York, N.Y.). 305: 1289-92. PMID 15297624 DOI: 10.1126/Science.1101372 |
0.71 |
|
| 2004 |
Zilberman D, Cao X, Johansen LK, Xie Z, Carrington JC, Jacobsen SE. Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats. Current Biology : Cb. 14: 1214-20. PMID 15242620 DOI: 10.1016/J.Cub.2004.06.055 |
0.824 |
|
| 2004 |
Xie Z, Johansen LK, Gustafson AM, Kasschau KD, Lellis AD, Zilberman D, Jacobsen SE, Carrington JC. Genetic and functional diversification of small RNA pathways in plants. Plos Biology. 2: E104. PMID 15024409 DOI: 10.1371/Journal.Pbio.0020104 |
0.734 |
|
| 2004 |
Jackson JP, Johnson L, Jasencakova Z, Zhang X, PerezBurgos L, Singh PB, Cheng X, Schubert I, Jenuwein T, Jacobsen SE. Dimethylation of histone H3 lysine 9 is a critical mark for DNA methylation and gene silencing in Arabidopsis thaliana. Chromosoma. 112: 308-15. PMID 15014946 DOI: 10.1007/S00412-004-0275-7 |
0.628 |
|
| 2004 |
Chan SW, Zilberman D, Xie Z, Johansen LK, Carrington JC, Jacobsen SE. RNA silencing genes control de novo DNA methylation. Science (New York, N.Y.). 303: 1336. PMID 14988555 DOI: 10.1126/Science.1095989 |
0.868 |
|
| 2004 |
Kinoshita T, Miura A, Choi Y, Kinoshita Y, Cao X, Jacobsen SE, Fischer RL, Kakutani T. One-way control of FWA imprinting in Arabidopsis endosperm by DNA methylation. Science (New York, N.Y.). 303: 521-3. PMID 14631047 DOI: 10.1126/Science.1089835 |
0.641 |
|
| 2003 |
Cao X, Aufsatz W, Zilberman D, Mette MF, Huang MS, Matzke M, Jacobsen SE. Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation. Current Biology : Cb. 13: 2212-7. PMID 14680640 DOI: 10.1016/J.Cub.2003.11.052 |
0.837 |
|
| 2003 |
Kato M, Miura A, Bender J, Jacobsen SE, Kakutani T. Role of CG and non-CG methylation in immobilization of transposons in Arabidopsis. Current Biology : Cb. 13: 421-6. PMID 12620192 DOI: 10.1016/S0960-9822(03)00106-4 |
0.626 |
|
| 2003 |
Zilberman D, Cao X, Jacobsen SE. ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation. Science (New York, N.Y.). 299: 716-9. PMID 12522258 DOI: 10.1126/Science.1079695 |
0.847 |
|
| 2002 |
Soppe WJ, Jasencakova Z, Houben A, Kakutani T, Meister A, Huang MS, Jacobsen SE, Schubert I, Fransz PF. DNA methylation controls histone H3 lysine 9 methylation and heterochromatin assembly in Arabidopsis. The Embo Journal. 21: 6549-59. PMID 12456661 DOI: 10.1093/Emboj/Cdf657 |
0.636 |
|
| 2002 |
Schauer SE, Jacobsen SE, Meinke DW, Ray A. DICER-LIKE1: blind men and elephants in Arabidopsis development. Trends in Plant Science. 7: 487-91. PMID 12417148 DOI: 10.1016/S1360-1385(02)02355-5 |
0.431 |
|
| 2002 |
Johnson LM, Cao X, Jacobsen SE. Interplay between two epigenetic marks: DNA methylation and histone H3 lysine 9 methylation Current Biology. 12: 1360-1367. PMID 12194816 DOI: 10.1016/S0960-9822(02)00976-4 |
0.575 |
|
| 2002 |
Cao X, Jacobsen SE. Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes. Proceedings of the National Academy of Sciences of the United States of America. 99: 16491-8. PMID 12151602 DOI: 10.1073/Pnas.162371599 |
0.621 |
|
| 2002 |
Choi Y, Gehring M, Johnson L, Hannon M, Harada JJ, Goldberg RB, Jacobsen SE, Fischer RL. DEMETER, a DNA glycosylase domain protein, is required for endosperm gene imprinting and seed viability in arabidopsis. Cell. 110: 33-42. PMID 12150995 DOI: 10.1016/S0092-8674(02)00807-3 |
0.481 |
|
| 2002 |
Cao X, Jacobsen SE. Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing. Current Biology : Cb. 12: 1138-44. PMID 12121623 DOI: 10.1016/S0960-9822(02)00925-9 |
0.629 |
|
| 2002 |
Jackson JP, Lindroth AM, Cao X, Jacobsen SE. Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase. Nature. 416: 556-60. PMID 11898023 DOI: 10.1038/Nature731 |
0.799 |
|
| 2001 |
Malone CS, Miner MD, Doerr JR, Jackson JP, Jacobsen SE, Wall R, Teitell M. CmC(A/T)GG DNA methylation in mature B cell lymphoma gene silencing. Proceedings of the National Academy of Sciences of the United States of America. 98: 10404-9. PMID 11504918 DOI: 10.1073/Pnas.181206898 |
0.532 |
|
| 2001 |
Kishimoto N, Sakai H, Jackson J, Jacobsen SE, Meyerowitz EM, Dennis ES, Finnegan EJ. Site specificity of the Arabidopsis METI DNA methyltransferase demonstrated through hypermethylation of the superman locus. Plant Molecular Biology. 46: 171-83. PMID 11442057 DOI: 10.1023/A:1010636222327 |
0.718 |
|
| 2001 |
Lindroth AM, Cao X, Jackson JP, Zilberman D, McCallum CM, Henikoff S, Jacobsen SE. Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation Science. 292: 2077-2080. PMID 11349138 DOI: 10.1126/Science.1059745 |
0.861 |
|
| 2000 |
Soppe WJJ, Jacobsen SE, Alonso-Blanco C, Jackson JP, Kakutani T, Koornneef M, Peeters AJM. The late flowering phenotype of fwa mutants is caused by gain-of-function epigenetic alleles of a homeodomain gene Molecular Cell. 6: 791-802. PMID 11090618 DOI: 10.1016/S1097-2765(05)00090-0 |
0.502 |
|
| 2000 |
Sakai H, Krizek BA, Jacobsen SE, Meyerowitz EM. Regulation of SUP expression identifies multiple regulators involved in arabidopsis floral meristem development. The Plant Cell. 12: 1607-18. PMID 11006335 DOI: 10.1105/Tpc.12.9.1607 |
0.753 |
|
| 2000 |
Cao X, Springer NM, Muszynski MG, Phillips RL, Kaeppler S, Jacobsen SE. Conserved plant genes with similarity to mammalian de novo DNA methyltransferases. Proceedings of the National Academy of Sciences of the United States of America. 97: 4979-84. PMID 10781108 DOI: 10.1073/Pnas.97.9.4979 |
0.622 |
|
| 2000 |
Jacobsen SE, Sakai H, Finnegan EJ, Cao X, Meyerowitz EM. Ectopic hypermethylation of flower-specific genes in Arabidopsis. Current Biology : Cb. 10: 179-86. PMID 10704409 DOI: 10.1016/S0960-9822(00)00324-9 |
0.717 |
|
| 1999 |
Jacobsen SE, Running MP, Meyerowitz EM. Disruption of an RNA helicase/RNAse III gene in Arabidopsis causes unregulated cell division in floral meristems. Development (Cambridge, England). 126: 5231-43. PMID 10556049 |
0.772 |
|
| 1999 |
Jacobsen SE. Gene silencing: Maintaining methylation patterns Current Biology : Cb. 9. PMID 10469582 DOI: 10.1016/S0960-9822(99)80388-1 |
0.537 |
|
| 1998 |
Jacobsen SE, Olszewski NE, Meyerowitz EM. SPINDLY's role in the gibberellin response pathway. Symposia of the Society For Experimental Biology. 51: 73-8. PMID 10645426 |
0.7 |
|
| 1997 |
Jacobsen SE, Meyerowitz EM. Hypermethylated SUPERMAN epigenetic alleles in Arabidopsis Science. 277: 1100-1103. PMID 9262479 DOI: 10.1126/Science.277.5329.1100 |
0.642 |
|
| 1996 |
Léon-Kloosterziel KM, Gil MA, Ruijs GJ, Jacobsen SE, Olszewski NE, Schwartz SH, Zeevaart JAD, Koornneef M. Isolation and characterization of abscisic acid-deficient Arabidopsis mutants at two new loci Plant Journal. 10: 655-661. PMID 8893542 DOI: 10.1046/J.1365-313X.1996.10040655.X |
0.612 |
|
| 1996 |
Jacobsen SE, Binkowski KA, Olszewski NE. SPINDLY, a tetratricopeptide repeat protein involved in gibberellin signal transduction in Arabidopsis Proceedings of the National Academy of Sciences of the United States of America. 93: 9292-9296. PMID 8799194 DOI: 10.1073/Pnas.93.17.9292 |
0.638 |
|
| 1996 |
Clark SE, Jacobsen SE, Levin JZ, Meyerowitz EM. The CLAVATA and SHOOT MERISTEMLESS loci competitively regulate meristem activity in Arabidopsis. Development (Cambridge, England). 122: 1567-75. PMID 8625843 |
0.646 |
|
| 1996 |
Jacobsen SE, Olszewski NE. Gibberellins regulate the abundance of RNAs with sequence similarity to proteinase inhibitors, dioxygenases and dehydrogenases Planta. 198: 78-86. PMID 8580773 DOI: 10.1007/Bf00197589 |
0.662 |
|
| 1994 |
Jacobsen SE, Shi L, Xin Z, Olszewski NE. Gibberellin-induced changes in the translatable mRNA populations of stamens and shoots of gibberellin-deficient tomato Planta. 192: 372-378. PMID 7764403 DOI: 10.1007/Bf00198573 |
0.597 |
|
| 1993 |
Jacobsen SE, Olszewski NE. Mutations at the SPINDLY locus of Arabidopsis alter gibberellin signal transduction Plant Cell. 5: 887-896. PMID 8400871 DOI: 10.1105/Tpc.5.8.887 |
0.6 |
|
| 1991 |
Jacobsen SE, Olszewski NE. Characterization of the Arrest in Anther Development Associated with Gibberellin Deficiency of the gib-1 Mutant of Tomato. Plant Physiology. 97: 409-14. PMID 16668400 DOI: 10.1104/Pp.97.1.409 |
0.641 |
|
| 1991 |
Jacobsen SE, Olszewski NE. Characterization of the arrest in anther development associated with gibberellin deficiency of the gib-1 mutant of tomato Plant Physiology. 97: 409-414. |
0.607 |
|
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