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Ling-Ling Chen, Ph.D. - Publications

Affiliations: 
2009 University of Connecticut, Storrs, CT, United States 
Area:
Genetics, Molecular Biology
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105 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Shan L, Xu G, Yao RW, Luan PF, Huang Y, Zhang PH, Pan YH, Zhang L, Gao X, Li Y, Cao SM, Gao SX, Yang ZH, Li S, Yang LZ, ... ... Chen LL, et al. Nucleolar URB1 ensures 3' ETS rRNA removal to prevent exosome surveillance. Nature. PMID 36890225 DOI: 10.1038/s41586-023-05767-5  0.801
2023 Huang Y, Gao BQ, Meng Q, Yang LZ, Ma XK, Wu H, Pan YH, Yang L, Li D, Chen LL. CRISPR-dCas13-tracing reveals transcriptional memory and limited mRNA export in developing zebrafish embryos. Genome Biology. 24: 15. PMID 36658633 DOI: 10.1186/s13059-023-02848-6  0.406
2023 Chen LL, Bindereif A, Bozzoni I, Chang HY, Matera AG, Gorospe M, Hansen TB, Kjems J, Ma XK, Pek JW, Rajewsky N, Salzman J, Wilusz JE, Yang L, Zhao F. A guide to naming eukaryotic circular RNAs. Nature Cell Biology. PMID 36658223 DOI: 10.1038/s41556-022-01066-9  0.513
2023 Mattick JS, Amaral PP, Carninci P, Carpenter S, Chang HY, Chen LL, Chen R, Dean C, Dinger ME, Fitzgerald KA, Gingeras TR, Guttman M, Hirose T, Huarte M, Johnson R, et al. Long non-coding RNAs: definitions, functions, challenges and recommendations. Nature Reviews. Molecular Cell Biology. PMID 36596869 DOI: 10.1038/s41580-022-00566-8  0.557
2022 Yang LZ, Gao BQ, Huang Y, Wang Y, Yang L, Chen LL. Multi-color RNA imaging with CRISPR-Cas13b systems in living cells. Cell Insight. 1: 100044. PMID 37192858 DOI: 10.1016/j.cellin.2022.100044  0.519
2022 Zhu XT, Zhou R, Che J, Zheng YY, Tahir Ul Qamar M, Feng JW, Zhang J, Gao J, Chen LL. Ribosome profiling reveals the translational landscape and allele-specific translational efficiency in rice. Plant Communications. 100457. PMID 36199246 DOI: 10.1016/j.xplc.2022.100457  0.405
2022 Li S, Wu H, Chen LL. Screening circular RNAs with functional potential using the RfxCas13d/BSJ-gRNA system. Nature Protocols. PMID 35831613 DOI: 10.1038/s41596-022-00715-5  0.515
2022 Liu CX, Chen LL. Circular RNAs: Characterization, cellular roles, and applications. Cell. 185: 2390. PMID 35750036 DOI: 10.1016/j.cell.2022.06.001  0.491
2022 Yang L, Wilusz JE, Chen LL. Biogenesis and Regulatory Roles of Circular RNAs. Annual Review of Cell and Developmental Biology. PMID 35609906 DOI: 10.1146/annurev-cellbio-120420-125117  0.568
2022 Liu CX, Chen LL. Circular RNAs: Characterization, cellular roles, and applications. Cell. 185: 2016-2034. PMID 35584701 DOI: 10.1016/j.cell.2022.04.021  0.54
2022 Gao X, Ma XK, Li X, Li GW, Liu CX, Zhang J, Wang Y, Wei J, Chen J, Chen LL, Yang L. Knockout of circRNAs by base editing back-splice sites of circularized exons. Genome Biology. 23: 16. PMID 35012611 DOI: 10.1186/s13059-021-02563-0  0.505
2021 Liu CX, Guo SK, Nan F, Xu YF, Yang L, Chen LL. RNA circles with minimized immunogenicity as potent PKR inhibitors. Molecular Cell. PMID 34951963 DOI: 10.1016/j.molcel.2021.11.019  0.506
2021 Liu J, Yang LZ, Chen LL. Understanding lncRNA-protein assemblies with imaging and single-molecule approaches. Current Opinion in Genetics & Development. 72: 128-137. PMID 34933201 DOI: 10.1016/j.gde.2021.11.005  0.471
2021 Cable J, Heard E, Hirose T, Prasanth KV, Chen LL, Henninger JE, Quinodoz SA, Spector DL, Diermeier SD, Porman AM, Kumar D, Feinberg MW, Shen X, Unfried JP, Johnson R, et al. Noncoding RNAs: biology and applications-a Keystone Symposia report. Annals of the New York Academy of Sciences. PMID 34791665 DOI: 10.1111/nyas.14713  0.546
2021 Liu CX, Chen LL. Expanded regulation of circular RNA translation. Molecular Cell. 81: 4111-4113. PMID 34686312 DOI: 10.1016/j.molcel.2021.09.023  0.358
2021 Chen LL, Wilusz JE. Methods for circular RNAs. Methods (San Diego, Calif.). PMID 34601050 DOI: 10.1016/j.ymeth.2021.09.011  0.462
2021 Wu M, Yang LZ, Chen LL. Long noncoding RNA and protein abundance in lncRNPs. Rna (New York, N.Y.). PMID 34526358 DOI: 10.1261/rna.078971.121  0.447
2021 Li X, Zhang JL, Lei YN, Liu XQ, Xue W, Zhang Y, Nan F, Gao X, Zhang J, Wei J, Yang L, Chen LL. Linking circular intronic RNA degradation and function in transcription by RNase H1. Science China. Life Sciences. PMID 34453665 DOI: 10.1007/s11427-021-1993-6  0.438
2021 Zhang Y, Yang L, Chen LL. Characterization of Circular RNAs. Methods in Molecular Biology (Clifton, N.J.). 2372: 179-192. PMID 34417752 DOI: 10.1007/978-1-0716-1697-0_16  0.526
2021 Li GW, Nan F, Yuan GH, Liu CX, Liu X, Chen LL, Tian B, Yang L. SCAPTURE: a deep learning-embedded pipeline that captures polyadenylation information from 3' tag-based RNA-seq of single cells. Genome Biology. 22: 221. PMID 34376223 DOI: 10.1186/s13059-021-02437-5  0.377
2021 Wu M, Xu G, Han C, Luan PF, Xing YH, Nan F, Yang LZ, Huang Y, Yang ZH, Shan L, Yang L, Liu J, Chen LL. lncRNA controls phase separation of FC/DFCs to facilitate Pol I transcription. Science (New York, N.Y.). 373: 547-555. PMID 34326237 DOI: 10.1126/science.abf6582  0.526
2021 Wang XW, Liu CX, Chen LL, Zhang QC. RNA structure probing uncovers RNA structure-dependent biological functions. Nature Chemical Biology. 17: 755-766. PMID 34172967 DOI: 10.1038/s41589-021-00805-7  0.518
2021 Yao RW, Luan PF, Chen LL. An optimized fixation method containing glyoxal and paraformaldehyde for imaging nuclear bodies. Rna (New York, N.Y.). PMID 33846273 DOI: 10.1261/rna.078671.120  0.79
2021 Ma XK, Xue W, Chen LL, Yang L. CIRCexplorer pipelines for circRNA annotation and quantification from non-polyadenylated RNA-seq datasets. Methods (San Diego, Calif.). PMID 33588028 DOI: 10.1016/j.ymeth.2021.02.008  0.51
2021 Guo SK, Nan F, Liu CX, Yang L, Chen LL. Mapping circular RNA structures in living cells by SHAPE-MaP. Methods (San Diego, Calif.). PMID 33571668 DOI: 10.1016/j.ymeth.2021.01.011  0.485
2021 Zhou R, Sanz-Jimenez P, Zhu XT, Feng JW, Shao L, Song JM, Chen LL. Analysis of Rice Transcriptome Reveals the LncRNA/CircRNA Regulation in Tissue Development. Rice (New York, N.Y.). 14: 14. PMID 33507446 DOI: 10.1186/s12284-021-00455-2  0.468
2021 Statello L, Guo CJ, Chen LL, Huarte M. Author Correction: Gene regulation by long non-coding RNAs and its biological functions. Nature Reviews. Molecular Cell Biology. 22: 159. PMID 33420484 DOI: 10.1038/s41580-021-00330-4  0.434
2020 Statello L, Guo CJ, Chen LL, Huarte M. Gene regulation by long non-coding RNAs and its biological functions. Nature Reviews. Molecular Cell Biology. PMID 33353982 DOI: 10.1038/s41580-020-00315-9  0.485
2020 Li S, Li X, Xue W, Zhang L, Yang LZ, Cao SM, Lei YN, Liu CX, Guo SK, Shan L, Wu M, Tao X, Zhang JL, Gao X, Zhang J, ... ... Chen LL, et al. Screening for functional circular RNAs using the CRISPR-Cas13 system. Nature Methods. PMID 33288960 DOI: 10.1038/s41592-020-01011-4  0.516
2020 Tahir Ul Qamar M, Zhu X, Khan MS, Xing F, Chen LL. Pan-genome: A promising resource for noncoding RNA discovery in plants. The Plant Genome. 13: e20046. PMID 33217199 DOI: 10.1002/Tpg2.20046  0.353
2020 Wang Y, Yang LZ, Chen LL. Protocol for Dynamic Imaging of RNA in Living Cells by CRISPR-Cas13 System. Star Protocols. 1: 100037. PMID 33111085 DOI: 10.1016/j.xpro.2020.100037  0.519
2020 Wang Y, Chen LL. Organization and function of paraspeckles. Essays in Biochemistry. PMID 32830222 DOI: 10.1042/Ebc20200010  0.628
2020 Guo CJ, Xu G, Chen LL. Mechanisms of Long Noncoding RNA Nuclear Retention. Trends in Biochemical Sciences. PMID 32800670 DOI: 10.1016/J.Tibs.2020.07.001  0.588
2020 Chen LL. The expanding regulatory mechanisms and cellular functions of circular RNAs. Nature Reviews. Molecular Cell Biology. PMID 32366901 DOI: 10.1038/S41580-020-0243-Y  0.569
2020 Guo CJ, Ma XK, Xing YH, Zheng CC, Xu YF, Shan L, Zhang J, Wang S, Wang Y, Carmichael GG, Yang L, Chen LL. Distinct Processing of lncRNAs Contributes to Non-conserved Functions in Stem Cells. Cell. PMID 32259487 DOI: 10.1016/J.Cell.2020.03.006  0.683
2020 Seal RL, Chen LL, Griffiths-Jones S, Lowe TM, Mathews MB, O'Reilly D, Pierce AJ, Stadler PF, Ulitsky I, Wolin SL, Bruford EA. A guide to naming human non-coding RNA genes. The Embo Journal. e103777. PMID 32090359 DOI: 10.15252/Embj.2019103777  0.422
2020 Yao RW, Liu CX, Chen LL. Linking RNA Processing and Function. Cold Spring Harbor Symposia On Quantitative Biology. PMID 32019863 DOI: 10.1101/Sqb.2019.84.039495  0.842
2020 Ma XK, Wang MR, Liu CX, Dong R, Carmichael GG, Chen LL, Yang L. CIRCexplorer3-CLEAR: A Pipeline for Direct Comparison of Circular and Linear RNA Expression. Genomics, Proteomics & Bioinformatics. PMID 31904419 DOI: 10.1016/J.Gpb.2019.11.004  0.752
2019 Yang LZ, Wang Y, Li SQ, Yao RW, Luan PF, Wu H, Carmichael GG, Chen LL. Dynamic Imaging of RNA in Living Cells by CRISPR-Cas13 Systems. Molecular Cell. PMID 31757757 DOI: 10.1016/J.Molcel.2019.10.024  0.815
2019 Yao RW, Xu G, Wang Y, Shan L, Luan PF, Wang Y, Wu M, Yang LZ, Xing YH, Yang L, Chen LL. Nascent Pre-rRNA Sorting via Phase Separation Drives the Assembly of Dense Fibrillar Components in the Human Nucleolus. Molecular Cell. PMID 31540874 DOI: 10.1016/J.Molcel.2019.08.014  0.795
2019 Song Q, Lv F, Tahir Ul Qamar M, Xing F, Zhou R, Li H, Chen LL. Identification and Analysis of Micro-Exon Genes in the Rice Genome. International Journal of Molecular Sciences. 20. PMID 31159166 DOI: 10.3390/ijms20112685  0.32
2019 Yao RW, Wang Y, Chen LL. Cellular functions of long noncoding RNAs. Nature Cell Biology. 21: 542-551. PMID 31048766 DOI: 10.1038/S41556-019-0311-8  0.837
2019 Liu CX, Li X, Nan F, Jiang S, Gao X, Guo SK, Xue W, Cui Y, Dong K, Ding H, Qu B, Zhou Z, Shen N, Yang L, Chen LL. Structure and Degradation of Circular RNAs Regulate PKR Activation in Innate Immunity. Cell. PMID 31031002 DOI: 10.1016/J.Cell.2019.03.046  0.57
2019 Ke L, Zhou Z, Xu XW, Wang X, Liu Y, Xu Y, Huang Y, Wang S, Deng X, Chen LL, Xu Q. Evolutionary dynamics of lincRNA transcription in nine citrus species. The Plant Journal : For Cell and Molecular Biology. PMID 30739398 DOI: 10.1111/tpj.14279  0.391
2019 Dong R, Ma XK, Chen LL, Yang L. Genome-Wide Annotation of circRNAs and Their Alternative Back-Splicing/Splicing with CIRCexplorer Pipeline. Methods in Molecular Biology (Clifton, N.J.). 1870: 137-149. PMID 30539552 DOI: 10.1007/978-1-4939-8808-2_10  0.547
2019 CHEN L, FENG S, FAN Z, GONG C, LIU B, LIU Z, LI C, SONG E, SUN S, WU G, WU H, WU M, XU G, YUAN J, ZENG C, et al. Progress in non-coding RNA research Scientia Sinica Vitae. 49: 1573-1605. DOI: 10.1360/ssv-2019-0179  0.387
2018 Xing YH, Chen LL. Processing and roles of snoRNA-ended long noncoding RNAs. Critical Reviews in Biochemistry and Molecular Biology. 1-11. PMID 30252509 DOI: 10.1080/10409238.2018.1508411  0.631
2018 Wang Y, Hu SB, Wang MR, Yao RW, Wu D, Yang L, Chen LL. Genome-wide screening of NEAT1 regulators reveals cross-regulation between paraspeckles and mitochondria. Nature Cell Biology. PMID 30250064 DOI: 10.1038/S41556-018-0204-2  0.79
2018 Li X, Yang L, Chen LL. The Biogenesis, Functions, and Challenges of Circular RNAs. Molecular Cell. 71: 428-442. PMID 30057200 DOI: 10.1016/J.Molcel.2018.06.034  0.582
2018 Xiang JF, Yang Q, Liu CX, Wu M, Chen LL, Yang L. N6-Methyladenosines Modulate A-to-I RNA Editing. Molecular Cell. 69: 126-135.e6. PMID 29304330 DOI: 10.1016/J.Molcel.2017.12.006  0.584
2017 Liang D, Tatomer DC, Luo Z, Wu H, Yang L, Chen LL, Cherry S, Wilusz JE. The Output of Protein-Coding Genes Shifts to Circular RNAs When the Pre-mRNA Processing Machinery Is Limiting. Molecular Cell. 68: 940-954.e3. PMID 29174924 DOI: 10.1016/J.Molcel.2017.10.034  0.629
2017 Yang L, Chen LL. Enhancing the RNA engineering toolkit. Science (New York, N.Y.). 358: 996-997. PMID 29170221 DOI: 10.1126/Science.Aar2400  0.476
2017 Wu H, Yang L, Chen LL. The Diversity of Long Noncoding RNAs and Their Generation. Trends in Genetics : Tig. PMID 28629949 DOI: 10.1016/J.Tig.2017.05.004  0.617
2017 Li X, Liu CX, Xue W, Zhang Y, Jiang S, Yin QF, Wei J, Yao RW, Yang L, Chen LL. Coordinated circRNA Biogenesis and Function with NF90/NF110 in Viral Infection. Molecular Cell. PMID 28625552 DOI: 10.1016/J.Molcel.2017.05.023  0.797
2017 Xing YH, Yao RW, Zhang Y, Guo CJ, Jiang S, Xu G, Dong R, Yang L, Chen LL. SLERT Regulates DDX21 Rings Associated with Pol I Transcription. Cell. 169: 664-678.e16. PMID 28475895 DOI: 10.1016/J.Cell.2017.04.011  0.835
2017 Yang Y, Fan X, Mao M, Song X, Wu P, Zhang Y, Jin Y, Yang Y, Chen L, Wang Y, Wong CC, Xiao X, Wang Z. Extensive translation of circular RNAs driven by N(6)-methyladenosine. Cell Research. PMID 28281539 DOI: 10.1038/Cr.2017.31  0.454
2017 Chen LL, Yang L. ALUternative Regulation for Gene Expression. Trends in Cell Biology. PMID 28209295 DOI: 10.1016/J.Tcb.2017.01.002  0.569
2017 Niu N, Xiang JF, Yang Q, Wang L, Wei Z, Chen LL, Yang L, Zou W. RNA-binding protein SAMD4 regulates skeleton development through translational inhibition of Mig6 expression. Cell Discovery. 3: 16050. PMID 28163927 DOI: 10.1038/Celldisc.2016.50  0.434
2017 Wang L, Guo J, Chang J, Qamar MTu, Chen L. Inference of Transcriptional Regulation from Expression Data Using Model Integration Current Bioinformatics. 12: 426-434. DOI: 10.2174/1574893612666171006162012  0.33
2016 Dong R, Ma XK, Chen LL, Yang L. Increased complexity of circRNA expression during species evolution. Rna Biology. 0. PMID 27982734 DOI: 10.1080/15476286.2016.1269999  0.441
2016 Wu H, Yin QF, Luo Z, Yao RW, Zheng CC, Zhang J, Xiang JF, Yang L, Chen LL. Unusual Processing Generates SPA LncRNAs that Sequester Multiple RNA Binding Proteins. Molecular Cell. 64: 534-548. PMID 27871485 DOI: 10.1016/J.Molcel.2016.10.007  0.837
2016 Xing YH, Bai Z, Liu CX, Hu SB, Ruan M, Chen LL. Research progress of long noncoding RNA in China. Iubmb Life. PMID 27699981 DOI: 10.1002/Iub.1564  0.582
2016 Hu SB, Yao RW, Chen LL. Shedding light on paraspeckle structure by super-resolution microscopy. The Journal of Cell Biology. PMID 27646270 DOI: 10.1083/Jcb.201609008  0.752
2016 Chen LL. Linking Long Noncoding RNA Localization and Function. Trends in Biochemical Sciences. PMID 27499234 DOI: 10.1016/J.Tibs.2016.07.003  0.601
2016 Chen LL. Ling-Ling Chen: Linking Long Noncoding RNA Processing and Function to RNA Biology. Trends in Biochemical Sciences. PMID 27473297 DOI: 10.1016/J.Tibs.2016.07.006  0.612
2016 Zhang XO, Dong R, Zhang Y, Zhang JL, Luo Z, Zhang J, Chen LL, Yang L. Diverse alternative back-splicing and alternative splicing landscape of circular RNAs. Genome Research. PMID 27365365 DOI: 10.1101/Gr.202895.115  0.544
2016 Zhang Y, Xue W, Li X, Zhang J, Chen S, Zhang JL, Yang L, Chen LL. The Biogenesis of Nascent Circular RNAs. Cell Reports. PMID 27068474 DOI: 10.1016/J.Celrep.2016.03.058  0.593
2016 Chen LL. The biogenesis and emerging roles of circular RNAs. Nature Reviews. Molecular Cell Biology. PMID 26908011 DOI: 10.1038/Nrm.2015.32  0.584
2016 Xu XW, Zhou XH, Wang RR, Peng WL, An Y, Chen LL. Functional analysis of long intergenic non-coding RNAs in phosphate-starved rice using competing endogenous RNA network. Scientific Reports. 6: 20715. PMID 26860696 DOI: 10.1038/srep20715  0.467
2016 Zhang Y, Yang L, Chen LL. Characterization of Circular RNAs. Methods in Molecular Biology (Clifton, N.J.). 1402: 215-27. PMID 26721494 DOI: 10.1007/978-1-4939-3378-5_17  0.602
2015 Xiang JF, Yang L, Chen LL. The long noncoding RNA regulation at the MYC locus. Current Opinion in Genetics & Development. 33: 41-48. PMID 26254776 DOI: 10.1016/J.Gde.2015.07.001  0.533
2015 Guo J, Cheng G, Gou XY, Xing F, Li S, Han YC, Wang L, Song JM, Shu CC, Chen SW, Chen LL. Comprehensive transcriptome and improved genome annotation of Bacillus licheniformis WX-02. Febs Letters. PMID 26226425 DOI: 10.1016/j.febslet.2015.07.029  0.398
2015 Zhong C, Yin Q, Xie Z, Bai M, Dong R, Tang W, Xing YH, Zhang H, Yang S, Chen LL, Bartolomei MS, Ferguson-Smith A, Li D, Yang L, Wu Y, et al. CRISPR-Cas9-Mediated Genetic Screening in Mice with Haploid Embryonic Stem Cells Carrying a Guide RNA Library. Cell Stem Cell. PMID 26165924 DOI: 10.1016/J.Stem.2015.06.005  0.324
2015 Chen LL, Yang L. Gear Up in Circles. Molecular Cell. 58: 715-7. PMID 26046645 DOI: 10.1016/J.Molcel.2015.05.027  0.38
2015 Hu SB, Xiang JF, Li X, Xu Y, Xue W, Huang M, Wong CC, Sagum CA, Bedford MT, Yang L, Cheng D, Chen LL. Protein arginine methyltransferase CARM1 attenuates the paraspeckle-mediated nuclear retention of mRNAs containing IRAlus. Genes & Development. 29: 630-45. PMID 25792598 DOI: 10.1101/Gad.257048.114  0.472
2015 Chen LL, Yang L. Regulation of circRNA biogenesis. Rna Biology. 12: 381-8. PMID 25746834 DOI: 10.1080/15476286.2015.1020271  0.618
2015 Chen T, Xiang JF, Zhu S, Chen S, Yin QF, Zhang XO, Zhang J, Feng H, Dong R, Li XJ, Yang L, Chen LL. ADAR1 is required for differentiation and neural induction by regulating microRNA processing in a catalytically independent manner. Cell Research. 25: 459-76. PMID 25708366 DOI: 10.1038/cr.2015.24  0.308
2015 Yin QF, Hu SB, Xu YF, Yang L, Carmichael GG, Chen LL. SnoVectors for nuclear expression of RNA. Nucleic Acids Research. 43: e5. PMID 25378317 DOI: 10.1093/Nar/Gku1050  0.769
2015 Yin QF, Chen LL, Yang L. Fractionation of non-polyadenylated and ribosomal-free RNAs from mammalian cells. Methods in Molecular Biology (Clifton, N.J.). 1206: 69-80. PMID 25240887 DOI: 10.1007/978-1-4939-1369-5_6  0.622
2014 Zhang XO, Yin QF, Chen LL, Yang L. Gene expression profiling of non-polyadenylated RNA-seq across species. Genomics Data. 2: 237-41. PMID 26484100 DOI: 10.1016/J.Gdata.2014.07.005  0.628
2014 Yang L, Chen LL. Microexons go big. Cell. 159: 1488-9. PMID 25525868 DOI: 10.1016/J.Cell.2014.12.004  0.512
2014 Yang L, Chen LL. Competition of RNA splicing: line in or circle up. Science China. Life Sciences. 57: 1232-3. PMID 25398364 DOI: 10.1007/S11427-014-4770-7  0.626
2014 Zhang XO, Wang HB, Zhang Y, Lu X, Chen LL, Yang L. Complementary sequence-mediated exon circularization. Cell. 159: 134-47. PMID 25242744 DOI: 10.1016/J.Cell.2014.09.001  0.553
2014 Chen LL, Zhao JC. Functional analysis of long noncoding RNAs in development and disease. Advances in Experimental Medicine and Biology. 825: 129-58. PMID 25201105 DOI: 10.1007/978-1-4939-1221-6_4  0.545
2014 Zhang XO, Yin QF, Wang HB, Zhang Y, Chen T, Zheng P, Lu X, Chen LL, Yang L. Species-specific alternative splicing leads to unique expression of sno-lncRNAs. Bmc Genomics. 15: 287. PMID 24734784 DOI: 10.1186/1471-2164-15-287  0.5
2014 Lei Y, Lu L, Liu HY, Li S, Xing F, Chen LL. CRISPR-P: a web tool for synthetic single-guide RNA design of CRISPR-system in plants. Molecular Plant. 7: 1494-6. PMID 24719468 DOI: 10.1093/mp/ssu044  0.314
2014 Xiang JF, Yin QF, Chen T, Zhang Y, Zhang XO, Wu Z, Zhang S, Wang HB, Ge J, Lu X, Yang L, Chen LL. Human colorectal cancer-specific CCAT1-L lncRNA regulates long-range chromatin interactions at the MYC locus. Cell Research. 24: 513-31. PMID 24662484 DOI: 10.1038/Cr.2014.35  0.416
2014 Zhang Y, Yang L, Chen LL. Life without A tail: new formats of long noncoding RNAs. The International Journal of Biochemistry & Cell Biology. 54: 338-49. PMID 24513732 DOI: 10.1016/J.Biocel.2013.10.009  0.602
2014 Wang J, Chen D, Lei Y, Chang JW, Hao BH, Xing F, Li S, Xu Q, Deng XX, Chen LL. Citrus sinensis annotation project (CAP): a comprehensive database for sweet orange genome. Plos One. 9: e87723. PMID 24489955 DOI: 10.1371/journal.pone.0087723  0.35
2013 Zhang Y, Zhang XO, Chen T, Xiang JF, Yin QF, Xing YH, Zhu S, Yang L, Chen LL. Circular intronic long noncoding RNAs. Molecular Cell. 51: 792-806. PMID 24035497 DOI: 10.1016/J.Molcel.2013.08.017  0.579
2013 Wong MS, Chen L, Foster C, Kainthla R, Shay JW, Wright WE. Regulation of telomerase alternative splicing: a target for chemotherapy. Cell Reports. 3: 1028-35. PMID 23562158 DOI: 10.1016/J.Celrep.2013.03.011  0.451
2013 Zhu S, Xiang JF, Chen T, Chen LL, Yang L. Prediction of constitutive A-to-I editing sites from human transcriptomes in the absence of genomic sequences. Bmc Genomics. 14: 206. PMID 23537002 DOI: 10.1186/1471-2164-14-206  0.55
2012 Yin QF, Yang L, Zhang Y, Xiang JF, Wu YW, Carmichael GG, Chen LL. Long noncoding RNAs with snoRNA ends. Molecular Cell. 48: 219-30. PMID 22959273 DOI: 10.1016/J.Molcel.2012.07.033  0.744
2012 Chen LL, Carmichael GG. Nuclear Editing of mRNA 3'-UTRs. Current Topics in Microbiology and Immunology. 353: 111-21. PMID 21725897 DOI: 10.1007/82_2011_149  0.641
2011 Chen D, Meng Y, Yuan C, Bai L, Huang D, Lv S, Wu P, Chen LL, Chen M. Plant siRNAs from introns mediate DNA methylation of host genes. Rna (New York, N.Y.). 17: 1012-24. PMID 21518803 DOI: 10.1261/Rna.2589011  0.341
2011 Peng S, Chen LL, Lei XX, Yang L, Lin H, Carmichael GG, Huang Y. Genome-wide studies reveal that Lin28 enhances the translation of genes important for growth and survival of human embryonic stem cells. Stem Cells (Dayton, Ohio). 29: 496-504. PMID 21425412 DOI: 10.1002/Stem.591  0.706
2011 Yang L, Duff MO, Graveley BR, Carmichael GG, Chen LL. Genomewide characterization of non-polyadenylated RNAs. Genome Biology. 12: R16. PMID 21324177 DOI: 10.1186/Gb-2011-12-2-R16  0.732
2010 Chen LL, Carmichael GG. Long noncoding RNAs in mammalian cells: what, where, and why? Wiley Interdisciplinary Reviews. Rna. 1: 2-21. PMID 21956903 DOI: 10.1002/Wrna.5  0.769
2010 Chen LL, Yang L, Carmichael GG. Molecular basis for an attenuated cytoplasmic dsRNA response in human embryonic stem cells. Cell Cycle (Georgetown, Tex.). 9: 3552-64. PMID 20814227 DOI: 10.4161/Cc.9.17.12792  0.627
2010 Chen LL, Carmichael GG. Decoding the function of nuclear long non-coding RNAs. Current Opinion in Cell Biology. 22: 357-64. PMID 20356723 DOI: 10.1016/J.Ceb.2010.03.003  0.751
2009 Chen LL, Carmichael GG. Altered nuclear retention of mRNAs containing inverted repeats in human embryonic stem cells: functional role of a nuclear noncoding RNA. Molecular Cell. 35: 467-78. PMID 19716791 DOI: 10.1016/J.Molcel.2009.06.027  0.751
2008 Chen LL, Carmichael GG. Gene regulation by SINES and inosines: biological consequences of A-to-I editing of Alu element inverted repeats. Cell Cycle (Georgetown, Tex.). 7: 3294-301. PMID 18948735 DOI: 10.4161/Cc.7.21.6927  0.711
2008 Zhou J, Wang Q, Chen LL, Carmichael GG. On the mechanism of induction of heterochromatin by the RNA-binding protein vigilin. Rna (New York, N.Y.). 14: 1773-81. PMID 18648073 DOI: 10.1261/Rna.1036308  0.721
2008 Chen LL, DeCerbo JN, Carmichael GG. Alu element-mediated gene silencing. The Embo Journal. 27: 1694-705. PMID 18497743 DOI: 10.1038/Emboj.2008.94  0.714
1993 Chen LL, Clawson ML, Bilgrami S, Carmichael G. A sequence-specific single-stranded DNA-binding protein that is responsive to epidermal growth factor recognizes an S1 nuclease-sensitive region in the epidermal growth factor receptor promoter. Cell Growth & Differentiation : the Molecular Biology Journal of the American Association For Cancer Research. 4: 975-83. PMID 8117624  0.549
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