| Year |
Citation |
Score |
| 2024 |
Medina-Munoz HC, Kofman E, Jagannatha P, Boyle EA, Yu T, Jones KL, Mueller JR, Lykins GD, Doudna AT, Park SS, Blue SM, Ranzau BL, Kohli RM, Komor AC, Yeo GW. Expanded palette of RNA base editors for comprehensive RBP-RNA interactome studies. Nature Communications. 15: 875. PMID 38287010 DOI: 10.1038/s41467-024-45009-4 |
0.344 |
|
| 2024 |
Schmok JC, Jain M, Street LA, Tankka AT, Schafer D, Her HL, Elmsaouri S, Gosztyla ML, Boyle EA, Jagannatha P, Luo EC, Kwon EJ, Jovanovic M, Yeo GW. Large-scale evaluation of the ability of RNA-binding proteins to activate exon inclusion. Nature Biotechnology. PMID 38168984 DOI: 10.1038/s41587-023-02014-0 |
0.362 |
|
| 2023 |
Boyle EA, Goldberg G, Schmok JC, Burgado J, Izidro Layng F, Grunwald HA, Balotin KM, Cuoco MS, Chang KC, Ecklu-Mensah G, Arakaki AKS, Ahmed N, Garcia Arceo X, Jagannatha P, Pekar J, ... ... Yeo GW, et al. Junior scientists spotlight social bonds in seminars for diversity, equity, and inclusion in STEM. Plos One. 18: e0293322. PMID 37917746 DOI: 10.1371/journal.pone.0293322 |
0.773 |
|
| 2023 |
Medina-Munoz HC, Kofman E, Jagannatha P, Boyle EA, Yu T, Jones KL, Mueller JR, Lykins GD, Doudna AT, Park SS, Blue SM, Ranzau BL, Kohli RM, Komor AC, Yeo GW. Expanded palette of RNA base editors for comprehensive RBP-RNA interactome studies. Biorxiv : the Preprint Server For Biology. PMID 37808757 DOI: 10.1101/2023.09.25.558915 |
0.344 |
|
| 2023 |
Kofman E, Yee B, Medina-Munoz HC, Yeo GW. FLARE: a fast and flexible workflow for identifying RNA editing foci. Bmc Bioinformatics. 24: 370. PMID 37784060 DOI: 10.1186/s12859-023-05452-4 |
0.321 |
|
| 2023 |
Okholm TLH, Kamstrup AB, Nielsen MM, Hollensen AK, Graversgaard ML, Kristensen LS, Vang S, Park SS, Yeo GW, Dyrskjøt L, Kjems J, Pedersen JS, Damgaard CK. circHIPK3 nucleates IGF2BP2 and functions as a competing endogenous RNA. Biorxiv : the Preprint Server For Biology. PMID 37745562 DOI: 10.1101/2023.09.14.557527 |
0.39 |
|
| 2023 |
Antal CE, Oh TG, Aigner S, Luo EC, Yee BA, Campos T, Tiriac H, Rothamel KL, Cheng Z, Jiao H, Wang A, Hah N, Lenkiewicz E, Lumibao JC, Truitt ML, ... ... Yeo GW, et al. A super-enhancer-regulated RNA-binding protein cascade drives pancreatic cancer. Nature Communications. 14: 5195. PMID 37673892 DOI: 10.1038/s41467-023-40798-6 |
0.802 |
|
| 2023 |
Jin W, Brannan KW, Kapeli K, Park SS, Tan HQ, Gosztyla ML, Mujumdar M, Ahdout J, Henroid B, Rothamel K, Xiang JS, Wong L, Yeo GW. HydRA: Deep-learning models for predicting RNA-binding capacity from protein interaction association context and protein sequence. Molecular Cell. 83: 2595-2611.e11. PMID 37421941 DOI: 10.1016/j.molcel.2023.06.019 |
0.331 |
|
| 2023 |
Street L, Rothamel K, Brannan K, Jin W, Bokor B, Dong K, Rhine K, Madrigal A, Al-Azzam N, Kim JK, Ma Y, Abdou A, Wolin E, Doron-Mandel E, Ahdout J, ... ... Yeo GW, et al. Large-scale map of RNA binding protein interactomes across the mRNA life-cycle. Biorxiv : the Preprint Server For Biology. PMID 37333282 DOI: 10.1101/2023.06.08.544225 |
0.815 |
|
| 2023 |
Kathman SG, Koo SJ, Lindsey GL, Her HL, Blue SM, Li H, Jaensch S, Remsberg JR, Ahn K, Yeo GW, Ghosh B, Cravatt BF. Remodeling oncogenic transcriptomes by small molecules targeting NONO. Nature Chemical Biology. PMID 36864190 DOI: 10.1038/s41589-023-01270-0 |
0.327 |
|
| 2023 |
Vujovic A, de Rooij L, Keyvani Chahi A, Chen HT, Yee BA, Loganathan SK, Liu L, Chan DCH, Tajik A, Tsao E, Moreira S, Joshi P, Xu J, Wong N, Balde Z, ... ... Yeo GW, et al. In vivo screening unveils pervasive RNA-binding protein dependencies in leukemic stem cells and identifies ELAVL1 as a therapeutic target. Blood Cancer Discovery. PMID 36763002 DOI: 10.1158/2643-3230.BCD-22-0086 |
0.329 |
|
| 2023 |
Morelli KH, Smargon AA, Yeo GW. Programmable Macromolecule-based RNA-targeting Therapies To Treat Human Neurological Disorders. Rna (New York, N.Y.). PMID 36693761 DOI: 10.1261/rna.079519.122 |
0.315 |
|
| 2023 |
Kameda-Smith MM, Zhu H, Luo EC, Suk Y, Xella A, Yee B, Chokshi C, Xing S, Tan F, Fox RG, Adile AA, Bakhshinyan D, Brown K, Gwynne WD, Subapanditha M, ... ... Yeo GW, et al. Author Correction: Characterization of an RNA binding protein interactome reveals a context-specific post-transcriptional landscape of MYC-amplified medulloblastoma. Nature Communications. 14: 136. PMID 36627300 DOI: 10.1038/s41467-023-35816-6 |
0.806 |
|
| 2022 |
Morelli KH, Wu Q, Gosztyla ML, Liu H, Yao M, Zhang C, Chen J, Marina RJ, Lee K, Jones KL, Huang MY, Li A, Smith-Geater C, Thompson LM, Duan W, ... Yeo GW, et al. An RNA-targeting CRISPR-Cas13d system alleviates disease-related phenotypes in Huntington's disease models. Nature Neuroscience. PMID 36510111 DOI: 10.1038/s41593-022-01207-1 |
0.315 |
|
| 2022 |
Kameda-Smith MM, Zhu H, Luo EC, Suk Y, Xella A, Yee B, Chokshi C, Xing S, Tan F, Fox RG, Adile AA, Bakhshinyan D, Brown K, Gwynne WD, Subapanditha M, ... ... Yeo GW, et al. Characterization of an RNA binding protein interactome reveals a context-specific post-transcriptional landscape of MYC-amplified medulloblastoma. Nature Communications. 13: 7506. PMID 36473869 DOI: 10.1038/s41467-022-35118-3 |
0.788 |
|
| 2022 |
Benoit Bouvrette LP, Wang X, Boulais J, Kong J, Syed EU, Blue SM, Zhan L, Olson S, Stanton R, Wei X, Yee B, Van Nostrand EL, Fu XD, Burge CB, Graveley BR, ... Yeo GW, et al. RBP Image Database: A resource for the systematic characterization of the subcellular distribution properties of human RNA binding proteins. Nucleic Acids Research. PMID 36321651 DOI: 10.1093/nar/gkac971 |
0.607 |
|
| 2022 |
Rhine K, Al-Azzam N, Yu T, Yeo GW. Aging RNA granule dynamics in neurodegeneration. Frontiers in Molecular Biosciences. 9: 991641. PMID 36188213 DOI: 10.3389/fmolb.2022.991641 |
0.818 |
|
| 2022 |
Le P, Ahmed N, Yeo GW. Illuminating RNA biology through imaging. Nature Cell Biology. 24: 815-824. PMID 35697782 DOI: 10.1038/s41556-022-00933-9 |
0.803 |
|
| 2022 |
Moore JE, Purcaro MJ, Pratt HE, Epstein CB, Shoresh N, Adrian J, Kawli T, Davis CA, Dobin A, Kaul R, Halow J, Van Nostrand EL, Freese P, Gorkin DU, Shen Y, ... ... Yeo GW, et al. Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes. Nature. PMID 35474001 DOI: 10.1038/s41586-021-04226-3 |
0.493 |
|
| 2022 |
Nicholson-Shaw AL, Kofman ER, Yeo GW, Pasquinelli AE. Nuclear and cytoplasmic poly(A) binding proteins (PABPs) favor distinct transcripts and isoforms. Nucleic Acids Research. 50: 4685-4702. PMID 35438785 DOI: 10.1093/nar/gkac263 |
0.373 |
|
| 2022 |
Lee DP, Ray WJ, Mei TP, Hoon S, Scolnick J, Yeo GW. Antibody-Oligonucleotide Conjugation Using a SPAAC Copper-Free Method Compatible with 10× Genomics' Single-Cell RNA-Seq. Methods in Molecular Biology (Clifton, N.J.). 2463: 67-80. PMID 35344168 DOI: 10.1007/978-1-0716-2160-8_6 |
0.802 |
|
| 2022 |
Blue SM, Yee BA, Pratt GA, Mueller JR, Park SS, Shishkin AA, Starner AC, Van Nostrand EL, Yeo GW. Transcriptome-wide identification of RNA-binding protein binding sites using seCLIP-seq. Nature Protocols. PMID 35322209 DOI: 10.1038/s41596-022-00680-z |
0.337 |
|
| 2022 |
Yeo G, Xiang J, Mueller J, Luo EC, Yee B, Schafer D, Schmok J, Tan F, Rothamel K, McVicar R, Kwong E, Croker B, Jones K, Her HL, Chen CY, et al. Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions. Research Square. PMID 35313591 DOI: 10.21203/rs.3.rs-1394331/v1 |
0.809 |
|
| 2022 |
Smargon AA, Madrigal AA, Yee BA, Dong KD, Mueller JR, Yeo GW. Crosstalk between CRISPR-Cas9 and the human transcriptome. Nature Communications. 13: 1125. PMID 35236841 DOI: 10.1038/s41467-022-28719-5 |
0.346 |
|
| 2022 |
Xiang JS, Mueller JR, Luo EC, Yee BA, Schafer D, Schmok JC, Tan FE, Rothamel K, McVicar RN, Kwong EM, Jones KL, Her HL, Chen CY, Vu AQ, Jin W, ... ... Yeo GW, et al. Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions. Biorxiv : the Preprint Server For Biology. PMID 35233578 DOI: 10.1101/2022.02.21.481223 |
0.809 |
|
| 2022 |
Desi N, Tong QY, Teh V, Chan JJ, Zhang B, Tabatabaeian H, Tan HQ, Kapeli K, Jin W, Lim CY, Kwok ZH, Tan HT, Wang S, Siew BE, Lee KC, ... ... Yeo GW, et al. Global analysis of RNA-binding proteins identifies a positive feedback loop between LARP1 and MYC that promotes tumorigenesis. Cellular and Molecular Life Sciences : Cmls. 79: 147. PMID 35195778 DOI: 10.1007/s00018-021-04093-1 |
0.33 |
|
| 2021 |
Long T, Abbasi N, Hernandez JE, Li Y, Sayed IM, Ma S, Iemolo A, Yee BA, Yeo GW, Telese F, Ghosh P, Das S, Huang WJM. RNA binding protein DDX5 directs tuft cell specification and function to regulate microbial repertoire and disease susceptibility in the intestine. Gut. PMID 34853057 DOI: 10.1136/gutjnl-2021-324984 |
0.331 |
|
| 2021 |
Markmiller S, Sathe S, Server KL, Nguyen TB, Fulzele A, Cody N, Javaherian A, Broski S, Finkbeiner S, Bennett EJ, Lécuyer E, Yeo GW. Persistent mRNA localization defects and cell death in ALS neurons caused by transient cellular stress. Cell Reports. 36: 109685. PMID 34496257 DOI: 10.1016/j.celrep.2021.109685 |
0.334 |
|
| 2021 |
Brannan KW, Chaim IA, Marina RJ, Yee BA, Kofman ER, Lorenz DA, Jagannatha P, Dong KD, Madrigal AA, Underwood JG, Yeo GW. Robust single-cell discovery of RNA targets of RNA-binding proteins and ribosomes. Nature Methods. 18: 507-519. PMID 33963355 DOI: 10.1038/s41592-021-01128-0 |
0.401 |
|
| 2021 |
Jourdain AA, Begg BE, Mick E, Shah H, Calvo SE, Skinner OS, Sharma R, Blue SM, Yeo GW, Burge CB, Mootha VK. Loss of LUC7L2 and U1 snRNP subunits shifts energy metabolism from glycolysis to OXPHOS. Molecular Cell. PMID 33852893 DOI: 10.1016/j.molcel.2021.02.033 |
0.54 |
|
| 2021 |
Davis AG, Einstein JM, Zheng D, Jayne ND, Fu XD, Tian B, Yeo GW, Zhang DE. A CRISPR RNA-binding protein screen reveals regulators of RUNX1 isoform generation. Blood Advances. 5: 1310-1323. PMID 33656539 DOI: 10.1182/bloodadvances.2020002090 |
0.376 |
|
| 2021 |
Trujillo CA, Rice ES, Schaefer NK, Chaim IA, Wheeler EC, Madrigal AA, Buchanan J, Preissl S, Wang A, Negraes PD, Szeto RA, Herai RH, Huseynov A, Ferraz MSA, Borges FS, ... ... Yeo GW, et al. Reintroduction of the archaic variant of in cortical organoids alters neurodevelopment. Science (New York, N.Y.). 371. PMID 33574182 DOI: 10.1126/science.aax2537 |
0.555 |
|
| 2021 |
Van Nostrand EL, Freese P, Pratt GA, Wang X, Wei X, Xiao R, Blue SM, Chen JY, Cody NAL, Dominguez D, Olson S, Sundararaman B, Zhan L, Bazile C, Bouvrette LPB, ... ... Yeo GW, et al. Author Correction: A large-scale binding and functional map of human RNA-binding proteins. Nature. PMID 33402748 DOI: 10.1038/s41586-020-03067-w |
0.572 |
|
| 2020 |
Bajaj J, Hamilton M, Shima Y, Chambers K, Spinler K, Van Nostrand EL, Yee BA, Blue SM, Chen M, Rizzeri D, Chuah C, Oehler VG, Broome HE, Sasik R, Scott-Browne J, ... ... Yeo GW, et al. An in vivo genome-wide CRISPR screen identifies the RNA-binding protein Staufen2 as a key regulator of myeloid leukemia. Nature Cancer. 1: 410-422. PMID 34109316 DOI: 10.1038/s43018-020-0054-2 |
0.302 |
|
| 2020 |
Okholm TLH, Sathe S, Park SS, Kamstrup AB, Rasmussen AM, Shankar A, Chua ZM, Fristrup N, Nielsen MM, Vang S, Dyrskjøt L, Aigner S, Damgaard CK, Yeo GW, Pedersen JS. Transcriptome-wide profiles of circular RNA and RNA-binding protein interactions reveal effects on circular RNA biogenesis and cancer pathway expression. Genome Medicine. 12: 112. PMID 33287884 DOI: 10.1186/s13073-020-00812-8 |
0.341 |
|
| 2020 |
Corley M, Flynn RA, Lee B, Blue SM, Chang HY, Yeo GW. Footprinting SHAPE-eCLIP Reveals Transcriptome-wide Hydrogen Bonds at RNA-Protein Interfaces. Molecular Cell. PMID 33242392 DOI: 10.1016/j.molcel.2020.11.014 |
0.371 |
|
| 2020 |
Marina RJ, Brannan KW, Dong KD, Yee BA, Yeo GW. Evaluation of Engineered CRISPR-Cas-Mediated Systems for Site-Specific RNA Editing. Cell Reports. 33: 108350. PMID 33147453 DOI: 10.1016/j.celrep.2020.108350 |
0.329 |
|
| 2020 |
Lasman L, Krupalnik V, Viukov S, Mor N, Aguilera-Castrejon A, Schneir D, Bayerl J, Mizrahi O, Peles S, Tawil S, Sathe S, Nachshon A, Shani T, Zerbib M, Kilimnik I, ... ... Yeo GW, et al. Context-dependent functional compensation between Ythdf mA reader proteins. Genes & Development. PMID 32943573 DOI: 10.1101/Gad.340695.120 |
0.432 |
|
| 2020 |
Batra R, Nelles DA, Roth DM, Krach F, Nutter CA, Tadokoro T, Thomas JD, Sznajder ŁJ, Blue SM, Gutierrez HL, Liu P, Aigner S, Platoshyn O, Miyanohara A, Marsala M, ... ... Yeo GW, et al. The sustained expression of Cas9 targeting toxic RNAs reverses disease phenotypes in mouse models of myotonic dystrophy type 1. Nature Biomedical Engineering. PMID 32929188 DOI: 10.1038/S41551-020-00607-7 |
0.448 |
|
| 2020 |
Van Nostrand JL, Hellberg K, Luo EC, Van Nostrand EL, Dayn A, Yu J, Shokhirev MN, Dayn Y, Yeo GW, Shaw RJ. AMPK regulation of Raptor and TSC2 mediate metformin effects on transcriptional control of anabolism and inflammation. Genes & Development. PMID 32912901 DOI: 10.1101/Gad.339895.120 |
0.77 |
|
| 2020 |
Tavares CDJ, Aigner S, Sharabi K, Sathe S, Mutlu B, Yeo GW, Puigserver P. Transcriptome-wide analysis of PGC-1α-binding RNAs identifies genes linked to glucagon metabolic action. Proceedings of the National Academy of Sciences of the United States of America. PMID 32848060 DOI: 10.1073/Pnas.2000643117 |
0.413 |
|
| 2020 |
Boland BS, He Z, Tsai MS, Olvera JG, Omilusik KD, Duong HG, Kim ES, Limary AE, Jin W, Milner JJ, Yu B, Patel SA, Louis TL, Tysl T, Kurd NS, ... ... Yeo GW, et al. Heterogeneity and clonal relationships of adaptive immune cells in ulcerative colitis revealed by single-cell analyses. Science Immunology. 5. PMID 32826341 DOI: 10.1126/Sciimmunol.Abb4432 |
0.34 |
|
| 2020 |
Luo EC, Nathanson JL, Tan FE, Schwartz JL, Schmok JC, Shankar A, Markmiller S, Yee BA, Sathe S, Pratt GA, Scaletta DB, Ha Y, Hill DE, Aigner S, Yeo GW. Large-scale tethered function assays identify factors that regulate mRNA stability and translation. Nature Structural & Molecular Biology. PMID 32807991 DOI: 10.1038/S41594-020-0477-6 |
0.818 |
|
| 2020 |
Moore JE, Purcaro MJ, Pratt HE, Epstein CB, Shoresh N, Adrian J, Kawli T, Davis CA, Dobin A, Kaul R, Halow J, Van Nostrand EL, Freese P, Gorkin DU, ... ... Yeo GW, et al. Expanded encyclopaedias of DNA elements in the human and mouse genomes. Nature. 583: 699-710. PMID 32728249 DOI: 10.1038/S41586-020-2493-4 |
0.648 |
|
| 2020 |
Van Nostrand EL, Freese P, Pratt GA, Wang X, Wei X, Xiao R, Blue SM, Chen JY, Cody NAL, Dominguez D, Olson S, Sundararaman B, Zhan L, Bazile C, Bouvrette LPB, ... ... Yeo GW, et al. A large-scale binding and functional map of human RNA-binding proteins. Nature. 583: 711-719. PMID 32728246 DOI: 10.1038/S41586-020-2077-3 |
0.672 |
|
| 2020 |
Coyne AN, Zaepfel BL, Hayes L, Fitchman B, Salzberg Y, Luo EC, Bowen K, Trost H, Aigner S, Rigo F, Yeo GW, Harel A, Svendsen CN, Sareen D, Rothstein JD. GC Repeat RNA Initiates a POM121-Mediated Reduction in Specific Nucleoporins in C9orf72 ALS/FTD. Neuron. PMID 32673563 DOI: 10.1016/J.Neuron.2020.06.027 |
0.806 |
|
| 2020 |
Donsbach P, Yee BA, Sanchez-Hevia D, Berenguer J, Aigner S, Yeo GW, Klostermeier D. The Thermus thermophilus DEAD-box protein Hera is a general RNA binding protein and plays a key role in tRNA metabolism. Rna (New York, N.Y.). PMID 32669294 DOI: 10.1261/Rna.075580.120 |
0.446 |
|
| 2020 |
Kerman BE, Genoud S, Kurt Vatandaslar B, Denli AM, Ghosh SG, Xu X, Yeo GW, Aimone JB, Gage FH. Motoneuron expression profiling identifies an association between an axonal splice variant of HDGF-related protein 3 and peripheral myelination. The Journal of Biological Chemistry. PMID 32647008 DOI: 10.1074/Jbc.Ra120.014329 |
0.754 |
|
| 2020 |
Marcheva B, Perelis M, Weidemann BJ, Taguchi A, Lin H, Omura C, Kobayashi Y, Newman MV, Wyatt EJ, McNally EM, Fox JEM, Hong H, Shankar A, Wheeler EC, Ramsey KM, ... ... Yeo GW, et al. A role for alternative splicing in circadian control of exocytosis and glucose homeostasis. Genes & Development. PMID 32616519 DOI: 10.1101/Gad.338178.120 |
0.399 |
|
| 2020 |
Milner JJ, Toma C, He Z, Kurd NS, Nguyen QP, McDonald B, Quezada L, Widjaja CE, Witherden DA, Crowl JT, Shaw LA, Yeo GW, Chang JT, Omilusik KD, Goldrath AW. Heterogenous Populations of Tissue-Resident CD8 T Cells Are Generated in Response to Infection and Malignancy. Immunity. 52: 808-824.e7. PMID 32433949 DOI: 10.1016/J.Immuni.2020.04.007 |
0.329 |
|
| 2020 |
Kurd NS, He Z, Louis TL, Milner JJ, Omilusik KD, Jin W, Tsai MS, Widjaja CE, Kanbar JN, Olvera JG, Tysl T, Quezada LK, Boland BS, Huang WJ, Murre C, ... ... Yeo GW, et al. Early precursors and molecular determinants of tissue-resident memory CD8 T lymphocytes revealed by single-cell RNA sequencing. Science Immunology. 5. PMID 32414833 DOI: 10.1126/Sciimmunol.Aaz6894 |
0.338 |
|
| 2020 |
Wheeler EC, Vu AQ, Einstein JM, DiSalvo M, Ahmed N, Van Nostrand EL, Shishkin AA, Jin W, Allbritton NL, Yeo GW. Pooled CRISPR screens with imaging on microraft arrays reveals stress granule-regulatory factors. Nature Methods. PMID 32393832 DOI: 10.1038/S41592-020-0826-8 |
0.789 |
|
| 2020 |
Van Nostrand EL, Pratt GA, Yee BA, Wheeler EC, Blue SM, Mueller J, Park SS, Garcia KE, Gelboin-Burkhart C, Nguyen TB, Rabano I, Stanton R, Sundararaman B, Wang R, Fu XD, ... ... Yeo GW, et al. Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins. Genome Biology. 21: 90. PMID 32252787 DOI: 10.1186/S13059-020-01982-9 |
0.432 |
|
| 2020 |
Corley M, Burns MC, Yeo GW. How RNA-Binding Proteins Interact with RNA: Molecules and Mechanisms. Molecular Cell. 78: 9-29. PMID 32243832 DOI: 10.1016/J.Molcel.2020.03.011 |
0.438 |
|
| 2020 |
Smargon AA, Shi YJ, Yeo GW. RNA-targeting CRISPR systems from metagenomic discovery to transcriptomic engineering. Nature Cell Biology. PMID 32015437 DOI: 10.1038/S41556-019-0454-7 |
0.373 |
|
| 2020 |
Yeo GW, Hammell M. Decision letter: Spen links RNA-mediated endogenous retrovirus silencing and X chromosome inactivation Elife. DOI: 10.7554/Elife.54508.Sa1 |
0.324 |
|
| 2020 |
Bajaj J, Hamilton M, Shima Y, Chambers K, Spinler K, Van Nostrand EL, Yee BA, Blue SM, Chen M, Rizzeri D, Chuah C, Oehler VG, Broome HE, Sasik R, Scott-Browne J, ... ... Yeo GW, et al. An in vivo genome-wide CRISPR screen identifies the RNA-binding protein Staufen2 as a key regulator of myeloid leukemia Nature Cancer. 1: 410-422. DOI: 10.1038/S43018-020-0054-2 |
0.426 |
|
| 2019 |
Quinones-Valdez G, Tran SS, Jun HI, Bahn JH, Yang EW, Zhan L, Brümmer A, Wei X, Van Nostrand EL, Pratt GA, Yeo GW, Graveley BR, Xiao X. Regulation of RNA editing by RNA-binding proteins in human cells. Communications Biology. 2: 19. PMID 31924889 DOI: 10.1038/s42003-018-0271-8 |
0.384 |
|
| 2019 |
Lorenz DA, Sathe S, Einstein JM, Yeo GW. Direct RNA sequencing enables m6A detection in endogenous transcript isoforms at base specific resolution. Rna (New York, N.Y.). PMID 31624092 DOI: 10.1261/Rna.072785.119 |
0.43 |
|
| 2019 |
Di Stefano B, Luo EC, Haggerty C, Aigner S, Charlton J, Brumbaugh J, Ji F, Rabano Jiménez I, Clowers KJ, Huebner AJ, Clement K, Lipchina I, de Kort MAC, Anselmo A, Pulice J, ... ... Yeo GW, et al. The RNA Helicase DDX6 Controls Cellular Plasticity by Modulating P-Body Homeostasis. Cell Stem Cell. PMID 31588046 DOI: 10.1016/J.Stem.2019.08.018 |
0.813 |
|
| 2019 |
Trujillo CA, Gao R, Negraes PD, Gu J, Buchanan J, Preissl S, Wang A, Wu W, Haddad GG, Chaim IA, Domissy A, Vandenberghe M, Devor A, Yeo GW, Voytek B, et al. Complex Oscillatory Waves Emerging from Cortical Organoids Model Early Human Brain Network Development. Cell Stem Cell. PMID 31474560 DOI: 10.1016/J.Stem.2019.08.002 |
0.556 |
|
| 2019 |
Gianneschi NC, Blum A, Nelles D, Hidalgo F, Touve M, Sim D, Madrigal AA, Yeo G. Efficient Delivery of a Gene Editing Protein to Stem Cells via Peptide Brush Polymers. Angewandte Chemie (International Ed. in English). PMID 31404473 DOI: 10.1002/ANIE.201904894 |
0.326 |
|
| 2019 |
Kaiser RWJ, Ignarski M, Van Nostrand EL, Frese CK, Jain M, Cukoski S, Heinen H, Schaechter M, Seufert L, Bunte K, Frommolt P, Keller P, Helm M, Bohl K, Höhne M, ... ... Yeo GW, et al. A protein-RNA interaction atlas of the ribosome biogenesis factor AATF. Scientific Reports. 9: 11071. PMID 31363146 DOI: 10.1038/S41598-019-47552-3 |
0.47 |
|
| 2019 |
Fang MY, Markmiller S, Vu AQ, Javaherian A, Dowdle WE, Jolivet P, Bushway PJ, Castello NA, Baral A, Chan MY, Linsley JW, Linsley D, Mercola M, Finkbeiner S, Lecuyer E, ... ... Yeo GW, et al. Small-Molecule Modulation of TDP-43 Recruitment to Stress Granules Prevents Persistent TDP-43 Accumulation in ALS/FTD. Neuron. PMID 31272829 DOI: 10.1016/J.Neuron.2019.05.048 |
0.354 |
|
| 2019 |
Xiao R, Chen JY, Liang Z, Luo D, Chen G, Lu ZJ, Chen Y, Zhou B, Li H, Du X, Yang Y, San M, Wei X, Liu W, Lécuyer E, ... ... Yeo GW, et al. Pervasive Chromatin-RNA Binding Protein Interactions Enable RNA-Based Regulation of Transcription. Cell. 178: 107-121.e18. PMID 31251911 DOI: 10.1016/J.Cell.2019.06.001 |
0.672 |
|
| 2019 |
van den Hurk M, Erwin JA, Yeo GW, Gage FH, Bardy C. Corrigendum: Patch-Seq Protocol to Analyze the Electrophysiology, Morphology and Transcriptome of Whole Single Neurons Derived From Human Pluripotent Stem Cells. Frontiers in Molecular Neuroscience. 12: 150. PMID 31244603 DOI: 10.3389/Fnmol.2019.00150 |
0.752 |
|
| 2019 |
Sommer A, Marxreiter F, Krach F, Fadler T, Grosch J, Maroni M, Graef D, Eberhardt E, Riemenschneider MJ, Yeo GW, Kohl Z, Xiang W, Gage FH, Winkler J, Prots I, et al. Th17 Lymphocytes Induce Neuronal Cell Death in a Human iPSC-Based Model of Parkinson's Disease. Cell Stem Cell. 24: 1006. PMID 31173705 DOI: 10.1016/j.stem.2019.04.019 |
0.369 |
|
| 2019 |
Ganem NS, Ben-Asher N, Manning AC, Deffit SN, Washburn MC, Wheeler EC, Yeo GW, Zgayer OB, Mantsur E, Hundley HA, Lamm AT. Disruption in A-to-I Editing Levels Affects C. elegans Development More Than a Complete Lack of Editing. Cell Reports. 27: 1244-1253.e4. PMID 31018137 DOI: 10.1016/J.Celrep.2019.03.095 |
0.464 |
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| 2019 |
Nussbacher JK, Tabet R, Yeo GW, Lagier-Tourenne C. Disruption of RNA Metabolism in Neurological Diseases and Emerging Therapeutic Interventions. Neuron. 102: 294-320. PMID 30998900 DOI: 10.1016/J.Neuron.2019.03.014 |
0.467 |
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| 2019 |
Yang EW, Bahn JH, Hsiao EY, Tan BX, Sun Y, Fu T, Zhou B, Van Nostrand EL, Pratt GA, Freese P, Wei X, Quinones-Valdez G, Urban AE, Graveley BR, Burge CB, ... Yeo GW, et al. Allele-specific binding of RNA-binding proteins reveals functional genetic variants in the RNA. Nature Communications. 10: 1338. PMID 30902979 DOI: 10.1038/S41467-019-09292-W |
0.764 |
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| 2019 |
Gould TW, Dominguez B, de Winter F, Yeo GW, Liu P, Sundararaman B, Stark T, Vu A, Degen JL, Lin W, Lee KF. Glial cells maintain synapses by inhibiting an activity-dependent retrograde protease signal. Plos Genetics. 15: e1007948. PMID 30870413 DOI: 10.1371/Journal.Pgen.1007948 |
0.312 |
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| 2019 |
Ling SC, Dastidar SG, Tokunaga S, Ho WY, Lim K, Ilieva H, Parone PA, Tyan SH, Tse TM, Chang JC, Platoshyn O, Bui NB, Bui A, Vetto A, Sun S, ... ... Yeo GW, et al. Overriding FUS autoregulation in mice triggers gain-of-toxic dysfunctions in RNA metabolism and autophagy-lysosome axis. Elife. 8. PMID 30747709 DOI: 10.7554/Elife.40811 |
0.414 |
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| 2019 |
Quinones-Valdez G, Tran SS, Jun HI, Bahn JH, Yang EW, Zhan L, Brümmer A, Wei X, Van Nostrand EL, Pratt GA, Yeo GW, Graveley BR, Xiao X. Regulation of RNA editing by RNA-binding proteins in human cells. Communications Biology. 2: 19. PMID 30652130 DOI: 10.1038/s42003-018-0271-8 |
0.674 |
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| 2019 |
Tran SS, Jun HI, Bahn JH, Azghadi A, Ramaswami G, Van Nostrand EL, Nguyen TB, Hsiao YE, Lee C, Pratt GA, Martínez-Cerdeño V, Hagerman RJ, Yeo GW, Geschwind DH, Xiao X. Widespread RNA editing dysregulation in brains from autistic individuals. Nature Neuroscience. 22: 25-36. PMID 30559470 DOI: 10.1038/S41593-018-0287-X |
0.647 |
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| 2019 |
Yeo GW, Ceman S. Decision letter: FMRP promotes RNA localization to neuronal projections through interactions between its RGG domain and G-quadruplex RNA sequences Elife. DOI: 10.7554/Elife.52621.Sa1 |
0.4 |
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| 2019 |
Ling S, Dastidar SG, Tokunaga S, Ho WY, Lim K, Ilieva H, Parone PA, Tyan S, Tse TM, Chang J, Platoshyn O, Bui NB, Bui A, Vetto A, Sun S, ... ... Yeo GW, et al. Author response: Overriding FUS autoregulation in mice triggers gain-of-toxic dysfunctions in RNA metabolism and autophagy-lysosome axis Elife. DOI: 10.7554/Elife.40811.039 |
0.327 |
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| 2019 |
Koga T, Chaim I, Markmiller S, Benitez J, Parisian A, Miki S, Hessenauer F, Turner K, Venneti S, Malicki D, Wechsler-Reya R, Mischel P, Chen C, Yeo G, Furnari F. TMOD-28. AUTHENTIC HUMAN GLIOMA MODELING USING GENETICALLY ENGINEERED INDUCED PLURIPOTENT STEM CELLS Neuro-Oncology. 21: vi268-vi269. DOI: 10.1093/Neuonc/Noz175.1127 |
0.351 |
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| 2019 |
Kameda-Smith M, Brown K, Zhu H, Luo E, Yee B, Xing S, Venugopal C, Nostrand Ev, Bakhshinyan D, Subapanditha M, Adile A, Provias J, Fleming A, Hope K, Reimand J, ... ... Yeo G, et al. MEDU-44. MUSASHI-1 IS A MASTER REGULATOR OF ABERRANT TRANSLATION IN GROUP 3 MEDULLOBLASTOMA Neuro-Oncology. 21: ii112-ii113. DOI: 10.1093/Neuonc/Noz036.202 |
0.762 |
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| 2018 |
Tan FE, Sathe S, Wheeler EC, Nussbacher JK, Peter S, Yeo GW. A Transcriptome-wide Translational Program Defined by LIN28B Expression Level. Molecular Cell. PMID 30527666 DOI: 10.1016/J.Molcel.2018.10.041 |
0.41 |
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| 2018 |
Yee B, Pratt G, Graveley B, Van Nostrand E, Yeo G. RBP-Maps enables robust generation of splicing regulatory maps. Rna (New York, N.Y.). PMID 30413564 DOI: 10.1261/Rna.069237.118 |
0.435 |
|
| 2018 |
van den Hurk M, Erwin JA, Yeo GW, Gage FH, Bardy C. Patch-Seq Protocol to Analyze the Electrophysiology, Morphology and Transcriptome of Whole Single Neurons Derived From Human Pluripotent Stem Cells. Frontiers in Molecular Neuroscience. 11: 261. PMID 30147644 DOI: 10.3389/Fnmol.2018.00261 |
0.76 |
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| 2018 |
Sommer A, Maxreiter F, Krach F, Fadler T, Grosch J, Maroni M, Graef D, Eberhardt E, Riemenschneider MJ, Yeo GW, Kohl Z, Xiang W, Gage FH, Winkler J, Prots I, et al. Th17 Lymphocytes Induce Neuronal Cell Death in a Human iPSC-Based Model of Parkinson's Disease. Cell Stem Cell. 23: 123-131.e6. PMID 29979986 DOI: 10.1016/J.Stem.2018.06.015 |
0.41 |
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| 2018 |
Parra M, Booth BW, Weiszmann R, Yee BA, Yeo GW, Brown JB, Celniker SE, Conboy JG. An important class of intron retention events in human erythroblasts is regulated by cryptic exons proposed to function as splicing decoys. Rna (New York, N.Y.). PMID 29959282 DOI: 10.1261/Rna.066951.118 |
0.456 |
|
| 2018 |
Dominguez D, Freese P, Alexis MS, Su A, Hochman M, Palden T, Bazile C, Lambert NJ, Van Nostrand EL, Pratt GA, Yeo GW, Graveley BR, Burge CB. Sequence, Structure, and Context Preferences of Human RNA Binding Proteins. Molecular Cell. 70: 854-867.e9. PMID 29883606 DOI: 10.1016/J.Molcel.2018.05.001 |
0.669 |
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| 2018 |
Krach F, Batra R, C Wheeler E, Vu AQ, Wang R, Hutt K, Rabin SJ, Baughn MW, Libby RT, Diaz-Garcia S, Stauffer J, Pirie E, Saberi S, Rodriguez M, Madrigal AA, ... ... Yeo GW, et al. Transcriptome-pathology correlation identifies interplay between TDP-43 and the expression of its kinase CK1E in sporadic ALS. Acta Neuropathologica. PMID 29881994 DOI: 10.1007/S00401-018-1870-7 |
0.43 |
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| 2018 |
Huang H, Kapeli K, Jin W, Wong YP, Arumugam TV, Koh JH, Srimasorn S, Mallilankaraman K, Chua JJE, Yeo GW, Soong TW. Tissue-selective restriction of RNA editing of CaV1.3 by splicing factor SRSF9. Nucleic Acids Research. PMID 29733375 DOI: 10.1093/Nar/Gky348 |
0.463 |
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| 2018 |
Klann JE, Kim SH, Remedios KA, He Z, Metz PJ, Lopez J, Tysl T, Olvera JG, Ablack JN, Cantor JM, Boland BS, Yeo G, Zheng Y, Lu LF, Bui JD, et al. Integrin Activation Controls Regulatory T Cell-Mediated Peripheral Tolerance. Journal of Immunology (Baltimore, Md. : 1950). PMID 29703862 DOI: 10.4049/Jimmunol.1800112 |
0.34 |
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| 2018 |
Markmiller S, Soltanieh S, Server KL, Mak R, Jin W, Fang MY, Luo EC, Krach F, Yang D, Sen A, Fulzele A, Wozniak JM, Gonzalez DJ, Kankel MW, Gao FB, ... ... Yeo GW, et al. Context-Dependent and Disease-Specific Diversity in Protein Interactions within Stress Granules. Cell. 172: 590-604.e13. PMID 29373831 DOI: 10.1016/J.Cell.2017.12.032 |
0.789 |
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| 2017 |
Roloff A, Nelles DA, Thompson MP, Yeo GW, Gianneschi NC. Self-Transfecting Micellar RNA: Modulating Nanoparticle Cell Interactions via High Density Display of Small Molecule Ligands on Micelle Coronas. Bioconjugate Chemistry. PMID 29286237 DOI: 10.1021/Acs.Bioconjchem.7B00657 |
0.423 |
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| 2017 |
Lima SA, Chipman LB, Nicholson AL, Chen YH, Yee BA, Yeo GW, Coller J, Pasquinelli AE. Short poly(A) tails are a conserved feature of highly expressed genes. Nature Structural & Molecular Biology. PMID 29106412 DOI: 10.1038/Nsmb.3499 |
0.397 |
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| 2017 |
Scott DD, Trahan C, Zindy PJ, Aguilar LC, Delubac MY, Van Nostrand EL, Adivarahan S, Wei KE, Yeo GW, Zenklusen D, Oeffinger M. Nol12 is a multifunctional RNA binding protein at the nexus of RNA and DNA metabolism. Nucleic Acids Research. PMID 29069457 DOI: 10.1093/Nar/Gkx963 |
0.391 |
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| 2017 |
Deffit SN, Yee BA, Manning AC, Rajendren S, Vadlamani P, Wheeler EC, Domissy A, Washburn MC, Yeo GW, Hundley HA. The C. elegans neural editome reveals an ADAR target mRNA required for proper chemotaxis. Elife. 6. PMID 28925356 DOI: 10.7554/Elife.28625 |
0.415 |
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| 2017 |
Wheeler EC, Van Nostrand EL, Yeo GW. Advances and challenges in the detection of transcriptome-wide protein-RNA interactions. Wiley Interdisciplinary Reviews. Rna. PMID 28853213 DOI: 10.1002/Wrna.1436 |
0.464 |
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| 2017 |
Jiang L, Shao C, Wu QJ, Chen G, Zhou J, Yang B, Li H, Gou LT, Zhang Y, Wang Y, Yeo GW, Zhou Y, Fu XD. NEAT1 scaffolds RNA-binding proteins and the Microprocessor to globally enhance pri-miRNA processing. Nature Structural & Molecular Biology. PMID 28846091 DOI: 10.1038/Nsmb.3455 |
0.355 |
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| 2017 |
Batra R, Nelles DA, Pirie E, Blue SM, Marina RJ, Wang H, Chaim IA, Thomas JD, Zhang N, Nguyen V, Aigner S, Markmiller S, Xia G, Corbett KD, Swanson MS, ... Yeo GW, et al. Elimination of Toxic Microsatellite Repeat Expansion RNA by RNA-Targeting Cas9. Cell. PMID 28803727 DOI: 10.1016/J.Cell.2017.07.010 |
0.44 |
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| 2017 |
Van Nostrand EL, Shishkin A, Pratt GA, Nguyen TB, Yeo GW. Variation in single-nucleotide sensitivity of eCLIP derived from reverse transcription conditions. Methods (San Diego, Calif.). PMID 28790018 DOI: 10.1016/J.Ymeth.2017.08.002 |
0.394 |
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| 2017 |
Van Nostrand EL, Nguyen TB, Gelboin-Burkhart C, Wang R, Blue SM, Pratt GA, Louie AL, Yeo GW. Robust, Cost-Effective Profiling of RNA Binding Protein Targets with Single-end Enhanced Crosslinking and Immunoprecipitation (seCLIP). Methods in Molecular Biology (Clifton, N.J.). 1648: 177-200. PMID 28766298 DOI: 10.1007/978-1-4939-7204-3_14 |
0.451 |
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| 2017 |
Kapeli K, Martinez FJ, Yeo GW. Genetic mutations in RNA-binding proteins and their roles in ALS. Human Genetics. PMID 28762175 DOI: 10.1007/S00439-017-1830-7 |
0.419 |
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| 2017 |
Song Y, Botvinnik OB, Lovci MT, Kakaradov B, Liu P, Xu JL, Yeo GW. Single-Cell Alternative Splicing Analysis with Expedition Reveals Splicing Dynamics during Neuron Differentiation. Molecular Cell. PMID 28673540 DOI: 10.1016/J.Molcel.2017.06.003 |
0.8 |
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| 2017 |
Zeng C, Mulas F, Sui Y, Guan T, Miller N, Tan Y, Liu F, Jin W, Carrano AC, Huising MO, Shirihai OS, Yeo GW, Sander M. Pseudotemporal Ordering of Single Cells Reveals Metabolic Control of Postnatal β Cell Proliferation. Cell Metabolism. 25: 1160-1175.e11. PMID 28467932 DOI: 10.1016/J.Cmet.2017.04.014 |
0.328 |
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| 2017 |
D'Antonio M, Woodruff G, Nathanson JL, D'Antonio-Chronowska A, Arias A, Matsui H, Williams R, Herrera C, Reyna SM, Yeo GW, Goldstein LSB, Panopoulos AD, Frazer KA. High-Throughput and Cost-Effective Characterization of Induced Pluripotent Stem Cells. Stem Cell Reports. 8: 1101-1111. PMID 28410643 DOI: 10.1016/J.Stemcr.2017.03.011 |
0.361 |
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| 2017 |
Panopoulos AD, D'Antonio M, Benaglio P, Williams R, Hashem SI, Schuldt BM, DeBoever C, Arias AD, Garcia M, Nelson BC, Harismendy O, Jakubosky DA, Donovan MKR, Greenwald WW, Farnam K, ... ... Yeo GW, et al. iPSCORE: A Resource of 222 iPSC Lines Enabling Functional Characterization of Genetic Variation across a Variety of Cell Types. Stem Cell Reports. 8: 1086-1100. PMID 28410642 DOI: 10.1016/J.Stemcr.2017.03.012 |
0.339 |
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| 2017 |
Kakaradov B, Arsenio J, Widjaja CE, He Z, Aigner S, Metz PJ, Yu B, Wehrens EJ, Lopez J, Kim SH, Zuniga EI, Goldrath AW, Chang JT, Yeo GW. Early transcriptional and epigenetic regulation of CD8(+) T cell differentiation revealed by single-cell RNA sequencing. Nature Immunology. PMID 28218746 DOI: 10.1038/Ni.3688 |
0.78 |
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| 2017 |
Carter H, Marty R, Hofree M, Gross A, Jensen J, Fisch KM, Wu X, DeBoever C, Van Nostrand EL, Song Y, Wheeler E, Kreisberg JF, Lippman SM, Yeo G, Gutkind S, et al. Interaction Landscape of Inherited Polymorphisms with Somatic Events in Cancer. Cancer Discovery. PMID 28188128 DOI: 10.1158/2159-8290.Cd-16-1045 |
0.311 |
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| 2017 |
Lardelli RM, Schaffer AE, Eggens VR, Zaki MS, Grainger S, Sathe S, Van Nostrand EL, Schlachetzki Z, Rosti B, Akizu N, Scott E, Silhavy JL, Heckman LD, Rosti RO, Dikoglu E, ... ... Yeo GW, et al. Biallelic mutations in the 3' exonuclease TOE1 cause pontocerebellar hypoplasia and uncover a role in snRNA processing. Nature Genetics. PMID 28092684 DOI: 10.1038/Ng.3762 |
0.386 |
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| 2017 |
Davis AG, Einstein J, Nostrand ELV, Yeo GW, Zhang D. A CRISPR RNA-Binding Protein Screen Reveals Novel Regulators of RUNX1 Alternative Polyadenylation Blood. 130: 2428-2428. DOI: 10.1182/Blood.V130.Suppl_1.2428.2428 |
0.429 |
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| 2017 |
Koga T, Benitez J, Markmiller S, D’Antonio M, Parisian A, Saberi S, Turner K, Hessenauer M, Thorne AH, Zanca C, Mischel P, Frazer K, Yeo G, Cavenee W, Furnari F. TMOD-42. CRISPR/Cas9-EDITED HUMAN NEURAL STEM CELLS GIVE RISE TO BRAIN TUMORS RESEMBLING GLIOBLASTOMAS Neuro-Oncology. 19: vi263-vi263. DOI: 10.1093/Neuonc/Nox168.1078 |
0.303 |
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| 2016 |
Van Nostrand EL, Gelboin-Burkhart C, Wang R, Pratt GA, Blue SM, Yeo GW. CRISPR/Cas9-mediated integration enables TAG-eCLIP of endogenously tagged RNA binding proteins. Methods (San Diego, Calif.). PMID 28003131 DOI: 10.1016/J.Ymeth.2016.12.007 |
0.426 |
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| 2016 |
Einstein JM, Yeo GW. Making the cut in the dark genome. Science (New York, N.Y.). 354: 705-706. PMID 27846591 DOI: 10.1126/Science.Aak9849 |
0.386 |
|
| 2016 |
Brannan KW, Yeo GW. From Protein-RNA Predictions toward a Peptide-RNA Code. Molecular Cell. 64: 437-438. PMID 27814488 DOI: 10.1016/J.Molcel.2016.10.023 |
0.397 |
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| 2016 |
Batra R, Stark TJ, Clark E, Belzile JP, Wheeler EC, Yee BA, Huang H, Gelboin-Burkhart C, Huelga SC, Aigner S, Roberts BT, Bos TJ, Sathe S, Donohue JP, Rigo F, ... ... Yeo GW, et al. RNA-binding protein CPEB1 remodels host and viral RNA landscapes. Nature Structural & Molecular Biology. PMID 27775709 DOI: 10.1038/Nsmb.3310 |
0.398 |
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| 2016 |
Martinez FJ, Pratt GA, Van Nostrand EL, Batra R, Huelga SC, Kapeli K, Freese P, Chun SJ, Ling K, Gelboin-Burkhart C, Fijany L, Wang HC, Nussbacher JK, Broski SM, Kim HJ, ... ... Yeo GW, et al. Protein-RNA Networks Regulated by Normal and ALS-Associated Mutant HNRNPA2B1 in the Nervous System. Neuron. PMID 27773581 DOI: 10.1016/J.Neuron.2016.09.050 |
0.609 |
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| 2016 |
Gómez-Salinero JM, López-Olañeta MM, Ortiz-Sánchez P, Larrasa-Alonso J, Gatto A, Felkin LE, Barton PJ, Navarro-Lérida I, Ángel Del Pozo M, García-Pavía P, Sundararaman B, Giovinazo G, Yeo GW, Lara-Pezzi E. The Calcineurin Variant CnAβ1 Controls Mouse Embryonic Stem Cell Differentiation by Directing mTORC2 Membrane Localization and Activation. Cell Chemical Biology. PMID 27746127 DOI: 10.1016/J.Chembiol.2016.09.010 |
0.372 |
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| 2016 |
Brannan KW, Jin W, Huelga SC, Banks CA, Gilmore JM, Florens L, Washburn MP, Van Nostrand EL, Pratt GA, Schwinn MK, Daniels DL, Yeo GW. SONAR Discovers RNA-Binding Proteins from Analysis of Large-Scale Protein-Protein Interactomes. Molecular Cell. PMID 27720645 DOI: 10.1016/J.Molcel.2016.09.003 |
0.444 |
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| 2016 |
Bardy C, van den Hurk M, Kakaradov B, Erwin JA, Jaeger BN, Hernandez RV, Eames T, Paucar AA, Gorris M, Marchand C, Jappelli R, Barron J, Bryant AK, Kellogg M, Lasken RS, ... ... Yeo GW, et al. Predicting the functional states of human iPSC-derived neurons with single-cell RNA-seq and electrophysiology. Molecular Psychiatry. PMID 27698428 DOI: 10.1038/Mp.2016.158 |
0.794 |
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| 2016 |
Grabole N, Zhang JD, Aigner S, Ruderisch N, Costa V, Weber FC, Theron M, Berntenis N, Spleiss O, Ebeling M, Yeo GW, Jagasia R, Kiialainen A. Genomic analysis of the molecular neuropathology of tuberous sclerosis using a human stem cell model. Genome Medicine. 8: 94. PMID 27655340 DOI: 10.1186/S13073-016-0347-3 |
0.334 |
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| 2016 |
Verma SK, Deshmukh V, Nutter CA, Jaworski E, Jin W, Wadhwa L, Abata J, Ricci M, Lincoln J, Martin JF, Yeo GW, Kuyumcu-Martinez MN. Rbfox2 function in RNA metabolism is impaired in hypoplastic left heart syndrome patient hearts. Scientific Reports. 6: 30896. PMID 27485310 DOI: 10.1038/Srep30896 |
0.359 |
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| 2016 |
Kapeli K, Pratt GA, Vu AQ, Hutt KR, Martinez FJ, Sundararaman B, Batra R, Freese P, Lambert NJ, Huelga SC, Chun SJ, Liang TY, Chang J, Donohue JP, Shiue L, ... ... Yeo GW, et al. Distinct and shared functions of ALS-associated proteins TDP-43, FUS and TAF15 revealed by multisystem analyses. Nature Communications. 7: 12143. PMID 27378374 DOI: 10.1038/Ncomms12143 |
0.671 |
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| 2016 |
Bos TJ, Nussbacher JK, Aigner S, Yeo GW. Tethered Function Assays as Tools to Elucidate the Molecular Roles of RNA-Binding Proteins. Advances in Experimental Medicine and Biology. 907: 61-88. PMID 27256382 DOI: 10.1007/978-3-319-29073-7_3 |
0.471 |
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| 2016 |
Van Nostrand EL, Huelga SC, Yeo GW. Experimental and Computational Considerations in the Study of RNA-Binding Protein-RNA Interactions. Advances in Experimental Medicine and Biology. 907: 1-28. PMID 27256380 DOI: 10.1007/978-3-319-29073-7_1 |
0.444 |
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| 2016 |
Nutter CA, Jaworski EA, Verma SK, Deshmukh V, Wang Q, Botvinnik OB, Lozano MJ, Abass IJ, Ijaz T, Brasier AR, Garg NJ, Wehrens XH, Yeo GW, Kuyumcu-Martinez MN. Dysregulation of RBFOX2 Is an Early Event in Cardiac Pathogenesis of Diabetes. Cell Reports. PMID 27239029 DOI: 10.1016/J.Celrep.2016.05.002 |
0.766 |
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| 2016 |
Rentas S, Holzapfel NT, Belew MS, Pratt GA, Voisin V, Wilhelm BT, Bader GD, Yeo GW, Hope KJ. Musashi-2 attenuates AHR signalling to expand human haematopoietic stem cells. Nature. 532: 508-11. PMID 27121842 DOI: 10.1038/Nature17665 |
0.444 |
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| 2016 |
Conway AE, Van Nostrand EL, Pratt GA, Aigner S, Wilbert ML, Sundararaman B, Freese P, Lambert NJ, Sathe S, Liang TY, Essex A, Landais S, Burge CB, Jones DL, Yeo GW. Enhanced CLIP Uncovers IMP Protein-RNA Targets in Human Pluripotent Stem Cells Important for Cell Adhesion and Survival. Cell Reports. PMID 27068461 DOI: 10.1016/J.Celrep.2016.03.052 |
0.763 |
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| 2016 |
Gerson-Gurwitz A, Wang S, Sathe S, Green R, Yeo GW, Oegema K, Desai A. A Small RNA-Catalytic Argonaute Pathway Tunes Germline Transcript Levels to Ensure Embryonic Divisions. Cell. PMID 27020753 DOI: 10.1016/J.Cell.2016.02.040 |
0.463 |
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| 2016 |
Van Nostrand EL, Pratt GA, Shishkin AA, Gelboin-Burkhart C, Fang MY, Sundararaman B, Blue SM, Nguyen TB, Surka C, Elkins K, Stanton R, Rigo F, Guttman M, Yeo GW. Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP). Nature Methods. PMID 27018577 DOI: 10.1038/Nmeth.3810 |
0.441 |
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| 2016 |
Nelles DA, Fang MY, O'Connell MR, Xu JL, Markmiller SJ, Doudna JA, Yeo GW. Programmable RNA Tracking in Live Cells with CRISPR/Cas9. Cell. 165: 488-96. PMID 26997482 DOI: 10.1016/J.Cell.2016.02.054 |
0.448 |
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| 2016 |
Sundararaman B, Zhan L, Blue SM, Stanton R, Elkins K, Olson S, Wei X, Van Nostrand EL, Pratt GA, Huelga SC, Smalec BM, Wang X, Hong EL, Davidson JM, Lécuyer E, ... ... Yeo GW, et al. Resources for the Comprehensive Discovery of Functional RNA Elements. Molecular Cell. 61: 903-913. PMID 26990993 DOI: 10.1016/J.Molcel.2016.02.012 |
0.43 |
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| 2016 |
Tan FE, Yeo GW. Blurred Boundaries: The RNA Binding Protein Lin28A Is Also an Epigenetic Regulator. Molecular Cell. 61: 1-2. PMID 26748607 DOI: 10.1016/J.Molcel.2015.12.018 |
0.394 |
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| 2016 |
Parra M, Yeo G, Conboy JG. Intron Retention Mechanisms That Regulate SF3B1 and Mitoferrin Gene Expression during Late Erythropoiesis Blood. 128: 1200-1200. DOI: 10.1182/Blood.V128.22.1200.1200 |
0.432 |
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| 2015 |
Dickey AS, Pineda VV, Tsunemi T, Liu PP, Miranda HC, Gilmore-Hall SK, Lomas N, Sampat KR, Buttgereit A, Torres MM, Flores AL, Arreola M, Arbez N, Akimov SS, Gaasterland T, ... ... Yeo GW, et al. PPAR-δ is repressed in Huntington's disease, is required for normal neuronal function and can be targeted therapeutically. Nature Medicine. PMID 26642438 DOI: 10.1038/Nm.4003 |
0.337 |
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| 2015 |
Shih HP, Seymour PA, Patel NA, Xie R, Wang A, Liu PP, Yeo GW, Magnuson MA, Sander M. A Gene Regulatory Network Cooperatively Controlled by Pdx1 and Sox9 Governs Lineage Allocation of Foregut Progenitor Cells. Cell Reports. PMID 26440894 DOI: 10.1016/J.Celrep.2015.08.082 |
0.343 |
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| 2015 |
Hung T, Pratt G, Sundararaman B, Townsend MJ, Chaivorapol C, Bhangale T, Graham RR, Ortmann W, Criswell LA, Yeo G, Behrens TW. The Ro60 autoantigen binds endogenous retroelements and regulates inflammatory gene expression. Science (New York, N.Y.). PMID 26382853 DOI: 10.1126/Science.Aac7442 |
0.466 |
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| 2015 |
Arsenio J, Kakaradov B, Metz PJ, Yeo GW, Chang JT. Reply to: "CD8(+) T cell diversification by asymmetric cell division". Nature Immunology. 16: 893-4. PMID 26287585 DOI: 10.1038/Ni.3234 |
0.753 |
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| 2015 |
Lee SR, Pratt GA, Martinez FJ, Yeo GW, Lykke-Andersen J. Target Discrimination in Nonsense-Mediated mRNA Decay Requires Upf1 ATPase Activity. Molecular Cell. 59: 413-25. PMID 26253027 DOI: 10.1016/J.Molcel.2015.06.036 |
0.406 |
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| 2015 |
Nelles DA, Fang MY, Aigner S, Yeo GW. Applications of Cas9 as an RNA-programmed RNA-binding protein. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 37: 732-9. PMID 25880497 DOI: 10.1002/Bies.201500001 |
0.464 |
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| 2015 |
Concepcion D, Ross KD, Hutt KR, Yeo GW, Hamilton BA. Nxf1 natural variant E610G is a semi-dominant suppressor of IAP-induced RNA processing defects. Plos Genetics. 11: e1005123. PMID 25835743 DOI: 10.1371/Journal.Pgen.1005123 |
0.403 |
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| 2015 |
Singh G, Pratt G, Yeo GW, Moore MJ. The Clothes Make the mRNA: Past and Present Trends in mRNP Fashion. Annual Review of Biochemistry. 84: 325-54. PMID 25784054 DOI: 10.1146/Annurev-Biochem-080111-092106 |
0.395 |
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| 2015 |
Nussbacher JK, Batra R, Lagier-Tourenne C, Yeo GW. RNA-binding proteins in neurodegeneration: Seq and you shall receive. Trends in Neurosciences. 38: 226-36. PMID 25765321 DOI: 10.1016/J.Tins.2015.02.003 |
0.459 |
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| 2015 |
Kurian L, Aguirre A, Sancho-Martinez I, Benner C, Hishida T, Nguyen TB, Reddy P, Nivet E, Krause MN, Nelles DA, Rodriguez Esteban C, Campistol JM, Yeo GW, Izpisua Belmonte JC. Identification of novel long noncoding RNAs underlying vertebrate cardiovascular development. Circulation. 131: 1278-90. PMID 25739401 DOI: 10.1161/Circulationaha.114.013303 |
0.421 |
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| 2015 |
Sun S, Ling SC, Qiu J, Albuquerque CP, Zhou Y, Tokunaga S, Li H, Qiu H, Bui A, Yeo GW, Huang EJ, Eggan K, Zhou H, Fu XD, Lagier-Tourenne C, et al. ALS-causative mutations in FUS/TLS confer gain and loss of function by altered association with SMN and U1-snRNP. Nature Communications. 6: 6171. PMID 25625564 DOI: 10.1038/Ncomms7171 |
0.377 |
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| 2015 |
Metz PJ, Arsenio J, Kakaradov B, Kim SH, Remedios KA, Oakley K, Akimoto K, Ohno S, Yeo GW, Chang JT. Regulation of asymmetric division and CD8+ T lymphocyte fate specification by protein kinase Cζ and protein kinase Cλ/ι. Journal of Immunology (Baltimore, Md. : 1950). 194: 2249-59. PMID 25617472 DOI: 10.4049/Jimmunol.1401652 |
0.75 |
|
| 2014 |
Arsenio J, Kakaradov B, Metz PJ, Kim SH, Yeo GW, Chang JT. Early specification of CD8+ T lymphocyte fates during adaptive immunity revealed by single-cell gene-expression analyses. Nature Immunology. 15: 365-72. PMID 24584088 DOI: 10.1038/Ni.2842 |
0.749 |
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| 2014 |
Washburn MC, Kakaradov B, Sundararaman B, Wheeler E, Hoon S, Yeo GW, Hundley HA. The dsRBP and inactive editor ADR-1 utilizes dsRNA binding to regulate A-to-I RNA editing across the C. elegans transcriptome. Cell Reports. 6: 599-607. PMID 24508457 DOI: 10.1016/J.Celrep.2014.01.011 |
0.798 |
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| 2014 |
Belzile JP, Stark TJ, Yeo GW, Spector DH. Human cytomegalovirus infection of human embryonic stem cell-derived primitive neural stem cells is restricted at several steps but leads to the persistence of viral DNA. Journal of Virology. 88: 4021-39. PMID 24453373 DOI: 10.1128/Jvi.03492-13 |
0.357 |
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| 2013 |
Lovci MT, Ghanem D, Marr H, Arnold J, Gee S, Parra M, Liang TY, Stark TJ, Gehman LT, Hoon S, Massirer KB, Pratt GA, Black DL, Gray JW, Conboy JG, ... Yeo GW, et al. Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges. Nature Structural & Molecular Biology. 20: 1434-42. PMID 24213538 DOI: 10.1038/Nsmb.2699 |
0.484 |
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| 2013 |
Cai W, Albini S, Wei K, Willems E, Guzzo RM, Tsuda M, Giordani L, Spiering S, Kurian L, Yeo GW, Puri PL, Mercola M. Coordinate Nodal and BMP inhibition directs Baf60c-dependent cardiomyocyte commitment. Genes & Development. 27: 2332-44. PMID 24186978 DOI: 10.1101/Gad.225144.113 |
0.379 |
|
| 2013 |
Lagier-Tourenne C, Baughn M, Rigo F, Sun S, Liu P, Li HR, Jiang J, Watt AT, Chun S, Katz M, Qiu J, Sun Y, Ling SC, Zhu Q, Polymenidou M, ... ... Yeo GW, et al. Targeted degradation of sense and antisense C9orf72 RNA foci as therapy for ALS and frontotemporal degeneration. Proceedings of the National Academy of Sciences of the United States of America. 110: E4530-9. PMID 24170860 DOI: 10.1073/Pnas.1318835110 |
0.451 |
|
| 2013 |
Marchetto MC, Narvaiza I, Denli AM, Benner C, Lazzarini TA, Nathanson JL, Paquola AC, Desai KN, Herai RH, Weitzman MD, Yeo GW, Muotri AR, Gage FH. Differential L1 regulation in pluripotent stem cells of humans and apes. Nature. 503: 525-9. PMID 24153179 DOI: 10.1038/Nature12686 |
0.788 |
|
| 2013 |
Verma SK, Deshmukh V, Liu P, Nutter CA, Espejo R, Hung ML, Wang GS, Yeo GW, Kuyumcu-Martinez MN. Reactivation of fetal splicing programs in diabetic hearts is mediated by protein kinase C signaling. The Journal of Biological Chemistry. 288: 35372-86. PMID 24151077 DOI: 10.1074/Jbc.M113.507426 |
0.341 |
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| 2013 |
Pandit S, Zhou Y, Shiue L, Coutinho-Mansfield G, Li H, Qiu J, Huang J, Yeo GW, Ares M, Fu XD. Genome-wide analysis reveals SR protein cooperation and competition in regulated splicing. Molecular Cell. 50: 223-35. PMID 23562324 DOI: 10.1016/J.Molcel.2013.03.001 |
0.402 |
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| 2013 |
Hunter SE, Finnegan EF, Zisoulis DG, Lovci MT, Melnik-Martinez KV, Yeo GW, Pasquinelli AE. Functional genomic analysis of the let-7 regulatory network in Caenorhabditis elegans. Plos Genetics. 9: e1003353. PMID 23516374 DOI: 10.1371/Journal.Pgen.1003353 |
0.362 |
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| 2013 |
Arnold ES, Ling SC, Huelga SC, Lagier-Tourenne C, Polymenidou M, Ditsworth D, Kordasiewicz HB, McAlonis-Downes M, Platoshyn O, Parone PA, Da Cruz S, Clutario KM, Swing D, Tessarollo L, Marsala M, ... ... Yeo GW, et al. ALS-linked TDP-43 mutations produce aberrant RNA splicing and adult-onset motor neuron disease without aggregation or loss of nuclear TDP-43. Proceedings of the National Academy of Sciences of the United States of America. 110: E736-45. PMID 23382207 DOI: 10.1073/Pnas.1222809110 |
0.39 |
|
| 2012 |
Vollmers C, Schmitz RJ, Nathanson J, Yeo G, Ecker JR, Panda S. Circadian oscillations of protein-coding and regulatory RNAs in a highly dynamic mammalian liver epigenome Cell Metabolism. 16: 833-845. PMID 23217262 DOI: 10.1016/J.Cmet.2012.11.004 |
0.358 |
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| 2012 |
Kapeli K, Yeo GW. Genome-wide approaches to dissect the roles of RNA binding proteins in translational control: implications for neurological diseases. Frontiers in Neuroscience. 6: 144. PMID 23060744 DOI: 10.3389/Fnins.2012.00144 |
0.438 |
|
| 2012 |
Lagier-Tourenne C, Polymenidou M, Hutt KR, Vu AQ, Baughn M, Huelga SC, Clutario KM, Ling SC, Liang TY, Mazur C, Wancewicz E, Kim AS, Watt A, Freier S, Hicks GG, ... ... Yeo GW, et al. Divergent roles of ALS-linked proteins FUS/TLS and TDP-43 intersect in processing long pre-mRNAs. Nature Neuroscience. 15: 1488-97. PMID 23023293 DOI: 10.1038/Nn.3230 |
0.462 |
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| 2012 |
Dembowski JA, An P, Scoulos-Hanson M, Yeo G, Han J, Fu XD, Grabowski PJ. Alternative Splicing of a Novel Inducible Exon Diversifies the CASK Guanylate Kinase Domain. Journal of Nucleic Acids. 2012: 816237. PMID 23008758 DOI: 10.1155/2012/816237 |
0.406 |
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| 2012 |
Wilbert ML, Huelga SC, Kapeli K, Stark TJ, Liang TY, Chen SX, Yan BY, Nathanson JL, Hutt KR, Lovci MT, Kazan H, Vu AQ, Massirer KB, Morris Q, Hoon S, ... Yeo GW, et al. LIN28 binds messenger RNAs at GGAGA motifs and regulates splicing factor abundance. Molecular Cell. 48: 195-206. PMID 22959275 DOI: 10.1016/J.Molcel.2012.08.004 |
0.485 |
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| 2012 |
Zhu W, Kuo D, Nathanson J, Satoh A, Pao GM, Yeo GW, Bryant SV, Voss SR, Gardiner DM, Hunter T. Retrotransposon long interspersed nucleotide element-1 (LINE-1) is activated during salamander limb regeneration. Development, Growth & Differentiation. 54: 673-85. PMID 22913491 DOI: 10.1111/J.1440-169X.2012.01368.X |
0.336 |
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| 2012 |
Andrade LN, Nathanson JL, Yeo GW, Menck CF, Muotri AR. Evidence for premature aging due to oxidative stress in iPSCs from Cockayne syndrome. Human Molecular Genetics. 21: 3825-34. PMID 22661500 DOI: 10.1093/Hmg/Dds211 |
0.61 |
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| 2012 |
Huelga SC, Vu AQ, Arnold JD, Liang TY, Liu PP, Yan BY, Donohue JP, Shiue L, Hoon S, Brenner S, Ares M, Yeo GW. Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins. Cell Reports. 1: 167-78. PMID 22574288 DOI: 10.1016/J.Celrep.2012.02.001 |
0.479 |
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| 2012 |
Polymenidou M, Lagier-Tourenne C, Hutt KR, Bennett CF, Cleveland DW, Yeo GW. Misregulated RNA processing in amyotrophic lateral sclerosis. Brain Research. 1462: 3-15. PMID 22444279 DOI: 10.1016/J.Brainres.2012.02.059 |
0.434 |
|
| 2011 |
Zisoulis DG, Yeo GW, Pasquinelli AE. Comprehensive identification of miRNA target sites in live animals. Methods in Molecular Biology (Clifton, N.J.). 732: 169-85. PMID 21431713 DOI: 10.1007/978-1-61779-083-6_13 |
0.342 |
|
| 2011 |
Lovci MT, Li HR, Fu XD, Yeo GW. RNA-seq analysis of gene expression and alternative splicing by double-random priming strategy. Methods in Molecular Biology (Clifton, N.J.). 729: 247-55. PMID 21365495 DOI: 10.1007/978-1-61779-065-2_16 |
0.441 |
|
| 2011 |
Polymenidou M, Lagier-Tourenne C, Hutt KR, Huelga SC, Moran J, Liang TY, Ling SC, Sun E, Wancewicz E, Mazur C, Kordasiewicz H, Sedaghat Y, Donohue JP, Shiue L, Bennett CF, ... Yeo GW, et al. Long pre-mRNA depletion and RNA missplicing contribute to neuronal vulnerability from loss of TDP-43. Nature Neuroscience. 14: 459-68. PMID 21358643 DOI: 10.1038/Nn.2779 |
0.484 |
|
| 2011 |
Van Wynsberghe PM, Kai ZS, Massirer KB, Burton VH, Yeo GW, Pasquinelli AE. LIN-28 co-transcriptionally binds primary let-7 to regulate miRNA maturation in Caenorhabditis elegans. Nature Structural & Molecular Biology. 18: 302-8. PMID 21297634 DOI: 10.1038/Nsmb.1986 |
0.362 |
|
| 2011 |
Wilbert ML, Yeo GW. Genome-wide approaches in the study of microRNA biology. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. 3: 491-512. PMID 21197653 DOI: 10.1002/Wsbm.128 |
0.317 |
|
| 2010 |
Nelles DA, Yeo GW. Alternative splicing in stem cell self-renewal and diferentiation. Advances in Experimental Medicine and Biology. 695: 92-104. PMID 21222201 DOI: 10.1007/978-1-4419-7037-4_7 |
0.482 |
|
| 2010 |
Muotri AR, Marchetto MC, Coufal NG, Oefner R, Yeo G, Nakashima K, Gage FH. L1 retrotransposition in neurons is modulated by MeCP2. Nature. 468: 443-6. PMID 21085180 DOI: 10.1038/Nature09544 |
0.769 |
|
| 2010 |
Marchetto MC, Carromeu C, Acab A, Yu D, Yeo GW, Mu Y, Chen G, Gage FH, Muotri AR. A model for neural development and treatment of Rett syndrome using human induced pluripotent stem cells. Cell. 143: 527-39. PMID 21074045 DOI: 10.1016/J.Cell.2010.10.016 |
0.649 |
|
| 2010 |
Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW. Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans. Nature Structural & Molecular Biology. 17: 173-9. PMID 20062054 DOI: 10.1038/Nsmb.1745 |
0.307 |
|
| 2010 |
Hinton A, Afrikanova I, Wilson M, King CC, Maurer B, Yeo GW, Hayek A, Pasquinelli AE. A distinct microRNA signature for definitive endoderm derived from human embryonic stem cells. Stem Cells and Development. 19: 797-807. PMID 19807270 DOI: 10.1089/Scd.2009.0224 |
0.336 |
|
| 2009 |
Xue Y, Zhou Y, Wu T, Zhu T, Ji X, Kwon YS, Zhang C, Yeo G, Black DL, Sun H, Fu XD, Zhang Y. Genome-wide analysis of PTB-RNA interactions reveals a strategy used by the general splicing repressor to modulate exon inclusion or skipping. Molecular Cell. 36: 996-1006. PMID 20064465 DOI: 10.1016/J.Molcel.2009.12.003 |
0.471 |
|
| 2009 |
Marchetto MC, Yeo GW, Kainohana O, Marsala M, Gage FH, Muotri AR. Transcriptional signature and memory retention of human-induced pluripotent stem cells. Plos One. 4: e7076. PMID 19763270 DOI: 10.1371/Journal.Pone.0007076 |
0.672 |
|
| 2009 |
Kuwabara T, Hsieh J, Muotri A, Yeo G, Warashina M, Lie DC, Moore L, Nakashima K, Asashima M, Gage FH. Wnt-mediated activation of NeuroD1 and retro-elements during adult neurogenesis. Nature Neuroscience. 12: 1097-105. PMID 19701198 DOI: 10.1038/Nn.2360 |
0.758 |
|
| 2009 |
Coufal NG, Garcia-Perez JL, Peng GE, Yeo GW, Mu Y, Lovci MT, Morell M, O'Shea KS, Moran JV, Gage FH. L1 retrotransposition in human neural progenitor cells. Nature. 460: 1127-31. PMID 19657334 DOI: 10.1038/Nature08248 |
0.691 |
|
| 2009 |
Thuret S, Toni N, Aigner S, Yeo GW, Gage FH. Hippocampus-dependent learning is associated with adult neurogenesis in MRL/MpJ mice. Hippocampus. 19: 658-69. PMID 19140178 DOI: 10.1002/Hipo.20550 |
0.646 |
|
| 2009 |
Yeo GW, Coufal NG, Liang TY, Peng GE, Fu XD, Gage FH. An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells. Nature Structural & Molecular Biology. 16: 130-7. PMID 19136955 DOI: 10.1038/Nsmb.1545 |
0.775 |
|
| 2008 |
Li H, Lovci MT, Kwon YS, Rosenfeld MG, Fu XD, Yeo GW. Determination of tag density required for digital transcriptome analysis: application to an androgen-sensitive prostate cancer model. Proceedings of the National Academy of Sciences of the United States of America. 105: 20179-84. PMID 19088194 DOI: 10.1073/Pnas.0807121105 |
0.389 |
|
| 2008 |
Seila AC, Calabrese JM, Levine SS, Yeo GW, Rahl PB, Flynn RA, Young RA, Sharp PA. Divergent transcription from active promoters. Science (New York, N.Y.). 322: 1849-51. PMID 19056940 DOI: 10.1126/Science.1162253 |
0.589 |
|
| 2008 |
Yeo GW, Coufal N, Aigner S, Winner B, Scolnick JA, Marchetto MC, Muotri AR, Carson C, Gage FH. Multiple layers of molecular controls modulate self-renewal and neuronal lineage specification of embryonic stem cells. Human Molecular Genetics. 17: R67-75. PMID 18632700 DOI: 10.1093/Hmg/Ddn065 |
0.79 |
|
| 2008 |
Palakodeti D, Smielewska M, Lu YC, Yeo GW, Graveley BR. The PIWI proteins SMEDWI-2 and SMEDWI-3 are required for stem cell function and piRNA expression in planarians. Rna (New York, N.Y.). 14: 1174-86. PMID 18456843 DOI: 10.1261/Rna.1085008 |
0.478 |
|
| 2007 |
Olson S, Blanchette M, Park J, Savva Y, Yeo GW, Yeakley JM, Rio DC, Graveley BR. A regulator of Dscam mutually exclusive splicing fidelity. Nature Structural & Molecular Biology. 14: 1134-40. PMID 21188797 DOI: 10.1038/Nsmb1339 |
0.39 |
|
| 2007 |
Calabrese JM, Seila AC, Yeo GW, Sharp PA. RNA sequence analysis defines Dicer's role in mouse embryonic stem cells. Proceedings of the National Academy of Sciences of the United States of America. 104: 18097-102. PMID 17989215 DOI: 10.1073/Pnas.0709193104 |
0.519 |
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| 2007 |
Yeo GW, Xu X, Liang TY, Muotri AR, Carson CT, Coufal NG, Gage FH. Alternative splicing events identified in human embryonic stem cells and neural progenitors. Plos Computational Biology. 3: 1951-67. PMID 17967047 DOI: 10.1371/Journal.Pcbi.0030196 |
0.789 |
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| 2007 |
Giorgi C, Yeo GW, Stone ME, Katz DB, Burge C, Turrigiano G, Moore MJ. The EJC factor eIF4AIII modulates synaptic strength and neuronal protein expression. Cell. 130: 179-91. PMID 17632064 DOI: 10.1016/J.Cell.2007.05.028 |
0.596 |
|
| 2007 |
van Praag H, Lucero MJ, Yeo GW, Stecker K, Heivand N, Zhao C, Yip E, Afanador M, Schroeter H, Hammerstone J, Gage FH. Plant-derived flavanol (-)epicatechin enhances angiogenesis and retention of spatial memory in mice. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 27: 5869-78. PMID 17537957 DOI: 10.1523/Jneurosci.0914-07.2007 |
0.526 |
|
| 2007 |
Yeo GW, Van Nostrand EL, Nostrand EL, Liang TY. Discovery and analysis of evolutionarily conserved intronic splicing regulatory elements. Plos Genetics. 3: e85. PMID 17530930 DOI: 10.1371/Journal.Pgen.0030085 |
0.455 |
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| 2007 |
Calabrese JM, Seila AC, Yeo GW, Sharp PA. RNA sequence analysis defines Dicer's role in mouse embryonic stem cells (Proceedings of the National Academy of Science of the United States of America (November 13, 2007) 104, 46, (18097-18102) DOI: 10.1073/pnas.0709193104) Proceedings of the National Academy of Sciences of the United States of America. 104: 21021. DOI: 10.1073/Pnas.0711071105 |
0.56 |
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| 2006 |
Stadler MB, Shomron N, Yeo GW, Schneider A, Xiao X, Burge CB. Inference of splicing regulatory activities by sequence neighborhood analysis. Plos Genetics. 2: e191. PMID 17121466 DOI: 10.1371/Journal.Pgen.0020191 |
0.728 |
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| 2006 |
Cao X, Yeo G, Muotri AR, Kuwabara T, Gage FH. Noncoding RNAs in the mammalian central nervous system. Annual Review of Neuroscience. 29: 77-103. PMID 16776580 DOI: 10.1146/Annurev.Neuro.29.051605.112839 |
0.69 |
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| 2005 |
Yeo GW. Splicing regulators: targets and drugs. Genome Biology. 6: 240. PMID 16356274 DOI: 10.1186/Gb-2005-6-12-240 |
0.418 |
|
| 2005 |
Han K, Yeo G, An P, Burge CB, Grabowski PJ. A combinatorial code for splicing silencing: UAGG and GGGG motifs. Plos Biology.. 3: e158. PMID 15828859 DOI: 10.1371/Journal.Pbio.0030158 |
0.631 |
|
| 2005 |
Yeo GW, Van Nostrand E, Holste D, Poggio T, Burge CB. Identification and analysis of alternative splicing events conserved in human and mouse. Proceedings of the National Academy of Sciences of the United States of America. 102: 2850-5. PMID 15708978 DOI: 10.1073/Pnas.0409742102 |
0.706 |
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| 2005 |
Yeo GW, Nostrand ELV, Liang TY. Discovery and Analysis of Evolutionarily Conserved Intronic Splicing Regulatory Elements in Mammalian Genomes Plos Genetics. DOI: 10.1371/Journal.Pgen.0030085.Eor |
0.316 |
|
| 2004 |
Wang Z, Rolish ME, Yeo G, Tung V, Mawson M, Burge CB. Systematic identification and analysis of exonic splicing silencers Cell. 119: 831-845. PMID 15607979 DOI: 10.1016/J.Cell.2004.11.010 |
0.717 |
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| 2004 |
Yeo G, Hoon S, Venkatesh B, Burge CB. Variation in sequence and organization of splicing regulatory elements in vertebrate genes Proceedings of the National Academy of Sciences of the United States of America. 101: 15700-15705. PMID 15505203 DOI: 10.1073/Pnas.0404901101 |
0.635 |
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| 2004 |
Yeo G, Holste D, Kreiman G, Burge CB. Variation in alternative splicing across human tissues. Genome Biology. 5: R74. PMID 15461793 DOI: 10.1186/Gb-2004-5-10-R74 |
0.717 |
|
| 2004 |
Yeo G, Burge CB. Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals Journal of Computational Biology. 11: 377-394. PMID 15285897 DOI: 10.1089/1066527041410418 |
0.596 |
|
| 2004 |
Fairbrother WG, Yeo GW, Yeh R, Goldstein P, Mawson M, Sharp PA, Burge CB. RESCUE-ESE identifies candidate exonic splicing enhancers in vertebrate exons. Nucleic Acids Research. 32: W187-90. PMID 15215377 DOI: 10.1093/Nar/Gkh393 |
0.684 |
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| 2004 |
Eng L, Coutinho G, Nahas S, Yeo G, Tanouye R, Babaei M, Dörk T, Burge C, Gatti RA. Nonclassical splicing mutations in the coding and noncoding regions of the ATM Gene: maximum entropy estimates of splice junction strengths. Human Mutation. 23: 67-76. PMID 14695534 DOI: 10.1002/Humu.10295 |
0.562 |
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