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Xueyun Zheng, Ph.D. - Publications

Affiliations: 
2011-2015 Chemistry University of California, Santa Barbara, Santa Barbara, CA, United States 
Area:
Mass Spectrometry, Biophysics
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40 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Kwantwi-Barima P, Garimella SVB, Attah IK, Zheng X, Ibrahim YM, Smith RD. Accumulation of Large Ion Populations with High Ion Densities and Effects Due to Space Charge in Traveling Wave-Based Structures for Lossless Ion Manipulations (SLIM) IMS-MS. Journal of the American Society For Mass Spectrometry. PMID 38175933 DOI: 10.1021/jasms.3c00389  0.33
2023 Harrilal CP, Garimella SVB, Chun J, Devanathan N, Zheng X, Ibrahim YM, Larriba-Andaluz C, Schenter G, Smith RD. The Role of Ion Rotation in Ion Mobility: Ultrahigh-Precision Prediction of Ion Mobility Dependence on Ion Mass Distribution and Translational to Rotational Energy Transfer. The Journal of Physical Chemistry. A. PMID 37330993 DOI: 10.1021/acs.jpca.3c01264  0.334
2023 Ross D, Bilbao A, Lee JY, Zheng X. : An Open-Source Python Library Enabling Efficient Extraction and Processing of Ion Mobility Spectrometry-Mass Spectrometry Data in the MZA File Format. Analytical Chemistry. PMID 37307589 DOI: 10.1021/acs.analchem.3c01653  0.352
2023 Ross DH, Guo J, Bilbao A, Huan T, Smith RD, Zheng X. Evaluating Software Tools for Lipid Identification from Ion Mobility Spectrometry-Mass Spectrometry Lipidomics Data. Molecules (Basel, Switzerland). 28. PMID 37110719 DOI: 10.3390/molecules28083483  0.363
2021 Zamith-Miranda D, Heyman HM, Burnet MC, Couvillion SP, Zheng X, Munoz N, Nelson WC, Kyle JE, Zink EM, Weitz KK, Bloodsworth KJ, Clair G, Zucker JD, Teuton JR, Payne SH, et al. A Histoplasma capsulatum Lipid Metabolic Map Identifies Antifungal Targets. Mbio. e0297221. PMID 34809453 DOI: 10.1128/mBio.02972-21  0.459
2021 Lee JY, Bilbao A, Conant CR, Bloodsworth KJ, Orton DJ, Zhou M, Wilson JW, Zheng X, Webb IK, Li A, Hixson KK, Fjeldsted JC, Ibrahim YM, Payne SH, Jansson C, et al. AutoCCS: Automated collision cross section calculation software for ion mobility spectrometry-mass spectrometry. Bioinformatics (Oxford, England). PMID 34145874 DOI: 10.1093/bioinformatics/btab429  0.404
2020 Mallis CS, Zheng X, Qiu X, McCabe JW, Shirzadeh M, Lyu J, Laganowsky A, Russell DH. Development of Native MS Capabilities on an Extended Mass Range Q-TOF MS. International Journal of Mass Spectrometry. 458. PMID 33162786 DOI: 10.1016/j.ijms.2020.116451  0.32
2020 Li A, Conant CR, Zheng X, Bloodsworth KJ, Orton DJ, Garimella SVB, Attah IK, Nagy G, Smith RD, Ibrahim YM. Assessing Collision Cross Section Calibration Strategies for Traveling Wave-Based Ion Mobility Separations in Structures for Lossless Ion Manipulations. Analytical Chemistry. PMID 33136380 DOI: 10.1021/acs.analchem.0c02829  0.328
2020 McCabe JW, Mallis CS, Kocurek KI, Poltash ML, Shirzadeh M, Hebert MJ, Fan L, Walker TE, Zheng X, Jiang T, Dong S, Lin CW, Laganowsky A, Russell DH. First-Principles Collision Cross Section Measurements of Large Proteins and Protein Complexes. Analytical Chemistry. PMID 32662991 DOI: 10.1021/Acs.Analchem.0C01285  0.45
2020 Zheng X, Kurulugama RT, Laganowsky A, Russell DH. Collision-Induced Unfolding Studies of Proteins and Protein Complexes using Drift Tube Ion Mobility-Mass Spectrometer. Analytical Chemistry. PMID 32338885 DOI: 10.1021/Acs.Analchem.0C00772  0.419
2019 Burnum-Johnson KE, Zheng X, Dodds JN, Ash J, Fourches D, Nicora CD, Wendler JP, Metz TO, Waters KM, Jansson JK, Smith RD, Baker ES. Ion Mobility Spectrometry and the Omics: Distinguishing Isomers, Molecular Classes and Contaminant Ions in Complex Samples. Trends in Analytical Chemistry : Trac. 116: 292-299. PMID 31798197 DOI: 10.1016/J.Trac.2019.04.022  0.664
2019 Zheng X, Smith FB, Aly NA, Cai J, Smith RD, Patterson AD, Baker ES. Evaluating the structural complexity of isomeric bile acids with ion mobility spectrometry. Analytical and Bioanalytical Chemistry. PMID 31098744 DOI: 10.1007/S00216-019-01869-0  0.658
2018 Zheng X, Dupuis KT, Aly NA, Zhou Y, Smith FB, Tang K, Smith RD, Baker ES. Utilizing ion mobility spectrometry and mass spectrometry for the analysis of polycyclic aromatic hydrocarbons, polychlorinated biphenyls, polybrominated diphenyl ethers and their metabolites. Analytica Chimica Acta. 1037: 265-273. PMID 30292301 DOI: 10.1016/J.Aca.2018.02.054  0.642
2018 Kyle JE, Aly N, Zheng X, Burnum-Johnson KE, Smith RD, Baker ES. Evaluating lipid mediator structural complexity using ion mobility spectrometry combined with mass spectrometry. Bioanalysis. PMID 29494212 DOI: 10.4155/Bio-2017-0245  0.647
2017 Zheng X, Aly NA, Zhou Y, Dupuis KT, Bilbao A, Paurus VL, Orton DJ, Wilson R, Payne SH, Smith RD, Baker ES. A structural examination and collision cross section database for over 500 metabolites and xenobiotics using drift tube ion mobility spectrometry. Chemical Science. 8: 7724-7736. PMID 29568436 DOI: 10.1039/C7Sc03464D  0.627
2017 Zheng X, Smith RD, Baker ES. Recent advances in lipid separations and structural elucidation using mass spectrometry combined with ion mobility spectrometry, ion-molecule reactions and fragmentation approaches. Current Opinion in Chemical Biology. 42: 111-118. PMID 29223060 DOI: 10.1016/J.Cbpa.2017.11.009  0.629
2017 Poad BLJ, Zheng X, Mitchell TW, Smith RD, Baker ES, Blanksby SJ. Online ozonolysis combined with ion mobility-mass spectrometry provides a new platform for lipid isomer analyses. Analytical Chemistry. PMID 29220163 DOI: 10.1021/Acs.Analchem.7B04091  0.657
2017 Orton DJ, Tfaily MM, Moore RJ, LaMarche BL, Zheng X, Fillmore TL, Chu RK, Weitz KK, Monroe ME, Kelly RT, Smith RD, Baker ES. A Customizable Flow Injection System for Automated, High Throughput and Time Sensitive Ion Mobility Spectrometry and Mass Spectrometry Measurements. Analytical Chemistry. PMID 29161511 DOI: 10.1021/Acs.Analchem.7B02986  0.58
2017 Stow SM, Causon T, Zheng X, Kurulugama RT, Mairinger T, May JC, Rennie EE, Baker ES, Smith RD, McLean JA, Hann S, Fjeldsted JC. An Interlaboratory Evaluation of Drift Tube Ion Mobility - Mass Spectrometry Collision Cross Section Measurements. Analytical Chemistry. PMID 28763190 DOI: 10.1021/Acs.Analchem.7B01729  0.655
2017 Zheng X, Deng L, Baker ES, Ibrahim YM, Petyuk VA, Smith RD. Distinguishing d- and l-aspartic and isoaspartic acids in amyloid β peptides with ultrahigh resolution ion mobility spectrometry. Chemical Communications (Cambridge, England). PMID 28654112 DOI: 10.1039/C7Cc03321D  0.589
2017 Ma J, Casey CP, Zheng X, Ibrahim YM, Wilkins CS, Renslow RS, Thomas DG, Payne SH, Monroe ME, Smith RD, Teeguarden JG, Baker ES, Metz TO. PIXiE: An Algorithm for Automated Ion Mobility Arrival Time Extraction and Collision Cross Section Calculation using Global Data Association. Bioinformatics (Oxford, England). PMID 28505286 DOI: 10.1093/Bioinformatics/Btx305  0.606
2017 Deng L, Garimella SVB, Hamid AM, Webb IK, Attah IK, Norheim RV, Prost SA, Zheng X, Sandoval JA, Baker ES, Ibrahim YM, Smith RD. CRIMP Accumulation and Compression of Billions of Ions for Ion Mobility-MS using Traveling Waves in Structures for Lossless Ion Manipulations. Analytical Chemistry. PMID 28497957 DOI: 10.1021/Acs.Analchem.7B00189  0.612
2017 Deng L, Webb IK, Garimella SV, Hamid AM, Zheng X, Norheim RV, Prost SA, Anderson GA, Sandoval JA, Baker ES, Ibrahim YM, Smith RD. Serpentine Ultra-long Path with Extended Routing (SUPER) High Resolution Traveling Wave Ion Mobility-MS using Structures for Lossless Ion Manipulations. Analytical Chemistry. PMID 28332832 DOI: 10.1021/Acs.Analchem.7B00185  0.658
2017 Zheng X, Wojcik R, Zhang X, Ibrahim YM, Burnum-Johnson KE, Orton DJ, Monroe ME, Moore RJ, Smith RD, Baker ES. Coupling Front-End Separations, Ion Mobility Spectrometry, and Mass Spectrometry for Enhanced Multidimensional Biological and Environmental Analyses. Annual Review of Analytical Chemistry (Palo Alto, Calif.). PMID 28301728 DOI: 10.1146/Annurev-Anchem-061516-045212  0.639
2017 Zheng X, Renslow RS, Makola MM, Webb IK, Deng L, Thomas DG, Govind N, Ibrahim YM, Kabanda MM, Dubery IA, Heyman HM, Smith RD, Madala NE, Baker ES. Structural Elucidation of cis/trans Dicaffeoylquinic Acid Photoisomerization Using Ion Mobility Spectrometry-Mass Spectrometry. The Journal of Physical Chemistry Letters. PMID 28267339 DOI: 10.1021/Acs.Jpclett.6B03015  0.57
2016 Zhang X, Romm M, Zheng X, Zink EM, Kim YM, Burnum-Johnson KE, Orton DJ, Apffel A, Ibrahim YM, Monroe ME, Moore RJ, Smith JN, Ma J, Renslow RS, Thomas DG, et al. SPE-IMS-MS: An automated platform for sub-sixty second surveillance of endogenous metabolites and xenobiotics in biofluids. Clinical Mass Spectrometry (Del Mar, Calif.). 2: 1-10. PMID 29276770 DOI: 10.1016/J.Clinms.2016.11.002  0.617
2016 Deng L, Ibrahim YM, Baker ES, Aly NA, Hamid AM, Zhang X, Zheng X, Garimella SVB, Webb IK, Prost SA, Sandoval JA, Norheim RV, Anderson GA, Tolmachev AV, Smith RD. Ion Mobility Separations of Isomers based upon Long Path Length Structures for Lossless Ion Manipulations Combined with Mass Spectrometry. Chemistryselect. 1: 2396-2399. PMID 28936476 DOI: 10.1002/slct.201600460  0.64
2016 Kyle JE, Casey CP, Stratton KG, Zink EM, Kim YM, Zheng X, Monroe ME, Weitz KK, Bloodsworth KJ, Orton DJ, Ibrahim YM, Moore RJ, Lee CG, Pedersen C, Orwoll E, et al. Comparing Identified and Statistically Significant Lipids and Polar Metabolites in 15-Year Old Serum and Dried Blood Spot Samples for Longitudinal Studies. Rapid Communications in Mass Spectrometry : Rcm. PMID 27958645 DOI: 10.1002/Rcm.7808  0.576
2016 Zheng X, Zhang X, Schocker NS, Renslow RS, Orton DJ, Khamsi J, Ashmus RA, Almeida IC, Tang K, Costello CE, Smith RD, Michael K, Baker ES. Enhancing glycan isomer separations with metal ions and positive and negative polarity ion mobility spectrometry-mass spectrometry analyses. Analytical and Bioanalytical Chemistry. PMID 27604268 DOI: 10.1007/S00216-016-9866-4  0.658
2016 Deng L, Ibrahim YM, Hamid AM, Garimella SV, Webb IK, Zheng X, Prost SA, Sandoval JA, Norheim RV, Anderson GA, Tolmachev AV, Baker ES, Smith RD. Ultra-High Resolution Ion Mobility Separations Utilizing Traveling Waves in a 13-m Serpentine Path Length Structures for Lossless Ion Manipulations Module. Analytical Chemistry. PMID 27531027 DOI: 10.1021/Acs.Analchem.6B01915  0.633
2016 Hamid AM, Garimella SV, Ibrahim YM, Deng L, Zheng X, Webb IK, Anderson GA, Prost SA, Norheim RV, Tolmachev AV, Baker ES, Smith RD. Achieving high resolution ion mobility separations using traveling waves in compact multi-turn Structures for Lossless Ion Manipulations. Analytical Chemistry. PMID 27479234 DOI: 10.1021/Acs.Analchem.6B01914  0.636
2016 Economou NJ, Giammona MJ, Do TD, Zheng X, Teplow DB, Buratto SK, Bowers MT. Amyloid β-protein assembly and Alzheimer's disease: Dodecamers of Aβ42, but not of Aβ40, seed fibril formation. Journal of the American Chemical Society. PMID 26839237 DOI: 10.1021/Jacs.5B11913  0.713
2015 Zheng X, Wu C, Liu D, Li H, Bitan G, Shea JE, Bowers MT. Mechanism of C-Terminal Fragments of Amyloid β-Protein as Aβ Inhibitors: Do C-Terminal Interactions Play a Key Role in Their Inhibitory Activity? The Journal of Physical Chemistry. B. PMID 26439281 DOI: 10.1021/Acs.Jpcb.5B08177  0.57
2015 Roychaudhuri R, Zheng X, Lomakin A, Maiti P, Condron MM, Benedek GB, Bitan G, Bowers MT, Teplow DB. Role of species-specific primary structure differences in Aβ42 assembly and neurotoxicity. Acs Chemical Neuroscience. PMID 26421877 DOI: 10.1021/Acschemneuro.5B00180  0.539
2015 Zheng X, Liu D, Roychaudhuri R, Teplow DB, Bowers MT. Amyloid β-Protein Assembly: Differential Effects of the Protective A2T Mutation and Recessive A2V Familial Alzheimer's Disease Mutation. Acs Chemical Neuroscience. PMID 26244608 DOI: 10.1021/Acschemneuro.5B00171  0.557
2015 Do TD, Chamas A, Zheng X, Barnes A, Chang D, Veldstra T, Takhar H, Dressler N, Trapp B, Miller K, McMahon A, Meredith SC, Shea JE, Lazar Cantrell K, Bowers MT. Elucidation of the Aggregation Pathways of Helix-Turn-Helix Peptides: Stabilization at the Turn Region Is Critical for Fibril Formation. Biochemistry. PMID 26070092 DOI: 10.1021/Acs.Biochem.5B00414  0.687
2015 Zheng X, Liu D, Klärner FG, Schrader T, Bitan G, Bowers MT. Amyloid β-protein assembly: The effect of molecular tweezers CLR01 and CLR03. The Journal of Physical Chemistry. B. 119: 4831-41. PMID 25751170 DOI: 10.1021/Acs.Jpcb.5B00692  0.6
2014 Roychaudhuri R, Lomakin A, Bernstein S, Zheng X, Condron MM, Benedek GB, Bowers M, Teplow DB. Gly25-Ser26 amyloid β-protein structural isomorphs produce distinct Aβ42 conformational dynamics and assembly characteristics. Journal of Molecular Biology. 426: 2422-41. PMID 24735871 DOI: 10.1016/J.Jmb.2014.04.004  0.682
2014 Lee S, Zheng X, Krishnamoorthy J, Savelieff MG, Park HM, Brender JR, Kim JH, Derrick JS, Kochi A, Lee HJ, Kim C, Ramamoorthy A, Bowers MT, Lim MH. Rational design of a structural framework with potential use to develop chemical reagents that target and modulate multiple facets of Alzheimer's disease. Journal of the American Chemical Society. 136: 299-310. PMID 24397771 DOI: 10.1021/Ja409801P  0.555
2012 Zheng X, Gessel MM, Wisniewski ML, Viswanathan K, Wright DL, Bahr BA, Bowers MT. Z-Phe-Ala-diazomethylketone (PADK) disrupts and remodels early oligomer states of the Alzheimer disease Aβ42 protein. The Journal of Biological Chemistry. 287: 6084-8. PMID 22253440 DOI: 10.1074/Jbc.C111.328575  0.743
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