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Sara Y. Cheng - Publications

Affiliations: 
Chemistry University of California, Berkeley, Berkeley, CA, United States 
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11/19 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 An D, Cheng SY, Head-Gordon T, Lin L, Lu J. Convergence of stochastic-extended Lagrangian molecular dynamics method for polarizable force field simulation Journal of Computational Physics. 438: 110338. DOI: 10.1016/J.JCP.2021.110338  0.32
2020 Cheng SY, Cao Y, Rouzbehani M, Cheng KH. Data showing the lipid conformations and membrane binding behaviors of beta-amyloid fibrils in phase-separated cholesterol-enriched lipid domains with and without glycolipid and oxidized cholesterol from coarse-grained molecular dynamics simulations. Data in Brief. 30: 105496. PMID 32368578 DOI: 10.1016/J.Dib.2020.105496  0.347
2020 Cheng SY, Cao Y, Rouzbehani M, Cheng KH. Coarse-grained MD simulations reveal beta-amyloid fibrils of various sizes bind to interfacial liquid-ordered and liquid-disordered regions in phase separated lipid rafts with diverse membrane-bound conformational states. Biophysical Chemistry. 260: 106355. PMID 32179374 DOI: 10.1016/J.Bpc.2020.106355  0.354
2019 Jing Z, Liu C, Cheng SY, Qi R, Walker BD, Piquemal JP, Ren P. Polarizable Force Fields for Biomolecular Simulations: Recent Advances and Applications. Annual Review of Biophysics. PMID 30916997 DOI: 10.1146/Annurev-Biophys-070317-033349  0.413
2016 Cheng SY, Chou G, Buie C, Vaughn MW, Compton C, Cheng KH. Data supporting beta-amyloid dimer structural transitions and protein-lipid interactions on asymmetric lipid bilayer surfaces using MD simulations on experimentally derived NMR protein structures. Data in Brief. 7: 658-72. PMID 27054174 DOI: 10.1016/J.Dib.2016.03.015  0.391
2016 Cheng SY, Chou G, Buie C, Vaughn MW, Compton C, Cheng KH. Maximally Asymmetric Transbilayer Distribution of Anionic Lipids Alters the Structure and Interaction with Lipids of an Amyloidogenic Protein Dimer Bound to the Membrane Surface. Chemistry and Physics of Lipids. PMID 26827904 DOI: 10.1016/J.Chemphyslip.2016.01.002  0.461
2015 Cheng KH, Qiu L, Cheng SY, Vaughn MW. Lipid insertion domain unfolding regulates protein orientational transition behavior in a lipid bilayer. Biophysical Chemistry. 206: 22-39. PMID 26164502 DOI: 10.1016/J.Bpc.2015.06.011  0.441
2015 Cheng SY, Duong HV, Compton C, Vaughn MW, Nguyen H, Cheng KH. Characterization of 3D Voronoi tessellation nearest neighbor lipid shells provides atomistic lipid disruption profile of protein containing lipid membranes. Biophysical Chemistry. 198: 22-35. PMID 25637891 DOI: 10.1016/J.Bpc.2015.01.005  0.383
2014 Abella JR, Cheng SY, Wang Q, Yang W, Ren P. Hydration Free Energy from Orthogonal Space Random Walk and Polarizable Force Field. Journal of Chemical Theory and Computation. 10: 2792-2801. PMID 25018674 DOI: 10.1021/Ct500202Q  0.395
2012 Qiu L, Buie C, Cheng SY, Chou G, Vaughn M, Cheng K. Atomistic MD Simulations Reveal the Protective Role of Cholesterol in the Membrane Disruptive Effects of Dimeric Beta-Amyloid in Neuronal Membrane Mimics Biophysical Journal. 102. DOI: 10.1016/J.Bpj.2011.11.3442  0.334
2012 Qiu L, Cheng SY, Cheng KH, Vaughn M. A New Monte Carlo Method for Exploring the Surface Area, Volume and Voids of Molecules in Protein Containing Lipid Bilayers with Atomistic Detail Biophysical Journal. 102. DOI: 10.1016/J.Bpj.2011.11.3250  0.412
Low-probability matches (unlikely to be authored by this person)
2015 Cheng KH, Qiu L, Cheng SY, Vaughn MW. Lipid insertion domain unfolding regulates protein orientational transition behavior in a lipid bilayer Biophysical Chemistry. 206: 22-39. DOI: 10.1016/j.bpc.2015.06.011  0.281
2017 Bell DR, Cheng SY, Salazar H, Ren P. Capturing RNA Folding Free Energy with Coarse-Grained Molecular Dynamics Simulations. Scientific Reports. 7: 45812. PMID 28393861 DOI: 10.1038/Srep45812  0.28
2017 Obliosca JM, Cheng SY, Chen Y, Llanos MF, Liu Y, Imphean DM, Bell D, Petty JT, Ren P, Yeh T. Locked Nucleic Acid Thymine Monomer Probe Identifies Four Single-Nucleotide Variants by Melting Temperature Biophysical Journal. 112: 331. DOI: 10.1016/J.Bpj.2016.11.1795  0.231
2004 Dutkiewicz R, Schilke B, Cheng S, Knieszner H, Craig EA, Marszalek J. Sequence-specific interaction between mitochondrial Fe-S scaffold protein Isu and Hsp70 Ssq1 is essential for their in vivo function Journal of Biological Chemistry. 279: 29167-29174. PMID 15123690 DOI: 10.1074/Jbc.M402947200  0.227
2017 Obliosca JM, Cheng SY, Chen YA, Llanos MF, Liu YL, Imphean DM, Bell D, Petty JT, Ren P, Yeh HC. LNA Thymidine Monomer Enables Differentiation of the Four Single-Nucleotide Variants by Melting Temperature. Journal of the American Chemical Society. PMID 28463488 DOI: 10.1021/Jacs.7B03395  0.223
2021 Liu M, Das AK, Lincoff J, Sasmal S, Cheng SY, Vernon RM, Forman-Kay JD, Head-Gordon T. Configurational Entropy of Folded Proteins and Its Importance for Intrinsically Disordered Proteins. International Journal of Molecular Sciences. 22. PMID 33810353 DOI: 10.3390/ijms22073420  0.21
2005 Knieszner H, Schilke B, Dutkiewicz R, D'Silvah P, Cheng S, Ohlson M, Craig EA, Marszalek J. Compensation for a defective interaction of the Hsp70 Ssq1 with the mitochondrial Fe-S cluster scaffold Isu Journal of Biological Chemistry. 280: 28966-28972. PMID 15958384 DOI: 10.1074/Jbc.M503031200  0.131
2012 Fiegel M, Cheng S, Zimmerman M, Seres T, Weitzel NS. Postreperfusion syndrome during liver transplantation. Seminars in Cardiothoracic and Vascular Anesthesia. 16: 106-13. PMID 22593180 DOI: 10.1177/1089253212444791  0.01
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