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Maxwell I Zimmerman - Publications

Affiliations: 
Washington University, Saint Louis, St. Louis, MO 
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32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Zimmerman O, Zimmerman MI, Raju S, Nelson CA, Errico JM, Madden EA, Holmes AC, Hassan AO, VanBlargan LA, Kim AS, Adams LJ, Basore K, Whitener BM, Palakurty S, Davis-Adams HG, et al. Vertebrate-class-specific binding modes of the alphavirus receptor MXRA8. Cell. PMID 37804831 DOI: 10.1016/j.cell.2023.09.007  0.484
2023 Stuchell-Brereton MD, Zimmerman MI, Miller JJ, Mallimadugula UL, Incicco JJ, Roy D, Smith LG, Cubuk J, Baban B, DeKoster GT, Frieden C, Bowman GR, Soranno A. Apolipoprotein E4 has extensive conformational heterogeneity in lipid-free and lipid-bound forms. Proceedings of the National Academy of Sciences of the United States of America. 120: e2215371120. PMID 36749730 DOI: 10.1073/pnas.2215371120  0.592
2023 Tamadonfar KO, Di Venanzio G, Pinkner JS, Dodson KW, Kalas V, Zimmerman MI, Bazan Villicana J, Bowman GR, Feldman MF, Hultgren SJ. Structure-function correlates of fibrinogen binding by adhesins critical in catheter-associated urinary tract infections. Proceedings of the National Academy of Sciences of the United States of America. 120: e2212694120. PMID 36652481 DOI: 10.1073/pnas.2212694120  0.561
2022 Cruz MA, Frederick TE, Mallimadugula UL, Singh S, Vithani N, Zimmerman MI, Porter JR, Moeder KE, Amarasinghe GK, Bowman GR. A cryptic pocket in Ebola VP35 allosterically controls RNA binding. Nature Communications. 13: 2269. PMID 35477718 DOI: 10.1038/s41467-022-29927-9  0.658
2021 Malik M, Ward MD, Fang Y, Porter JR, Zimmerman MI, Koelblen T, Roh M, Frolova AI, Burris TP, Bowman GR, Imoukhuede PI, England SK. Naturally Occurring Genetic Variants in the Oxytocin Receptor Alter Receptor Signaling Profiles. Acs Pharmacology & Translational Science. 4: 1543-1555. PMID 34661073 DOI: 10.1021/acsptsci.1c00095  0.53
2021 Zimmerman MI, Porter JR, Ward MD, Singh S, Vithani N, Meller A, Mallimadugula UL, Kuhn CE, Borowsky JH, Wiewiora RP, Hurley MFD, Harbison AM, Fogarty CA, Coffland JE, Fadda E, et al. SARS-CoV-2 simulations go exascale to predict dramatic spike opening and cryptic pockets across the proteome. Nature Chemistry. PMID 34031561 DOI: 10.1038/s41557-021-00707-0  0.681
2021 Ward MD, Zimmerman MI, Meller A, Chung M, Swamidass SJ, Bowman GR. Deep learning the structural determinants of protein biochemical properties by comparing structural ensembles with DiffNets. Nature Communications. 12: 3023. PMID 34021153 DOI: 10.1038/s41467-021-23246-1  0.611
2021 Vithani N, Ward MD, Zimmerman MI, Novak B, Borowsky JH, Singh S, Bowman GR. SARS-CoV2 Nsp16 activation mechanism and a cryptic pocket with pan-coronavirus antiviral potential. Biophysical Journal. PMID 33794150 DOI: 10.1016/j.bpj.2021.03.024  0.667
2021 Cubuk J, Alston JJ, Incicco JJ, Singh S, Stuchell-Brereton MD, Ward MD, Zimmerman MI, Vithani N, Griffith D, Wagoner JA, Bowman GR, Hall KB, Soranno A, Holehouse AS. The SARS-CoV-2 nucleocapsid protein is dynamic, disordered, and phase separates with RNA. Nature Communications. 12: 1936. PMID 33782395 DOI: 10.1038/s41467-021-21953-3  0.631
2020 Vithani N, Ward MD, Zimmerman MI, Novak B, Borowsky JH, Singh S, Bowman GR. SARS-CoV-2 Nsp16 activation mechanism and a cryptic pocket with pan-coronavirus antiviral potential. Biorxiv : the Preprint Server For Biology. PMID 33330873 DOI: 10.1101/2020.12.10.420109  0.667
2020 Riehl JR, Zimmerman MI, Singh MF, Bowman GR, Ching S. Computing and optimizing over all fixed-points of discrete systems on large networks. Journal of the Royal Society, Interface. 17: 20200126. PMID 32900299 DOI: 10.1098/Rsif.2020.0126  0.561
2020 Zimmerman MI, Porter JR, Ward MD, Singh S, Vithani N, Meller A, Mallimadugula UL, Kuhn CE, Borowsky JH, Wiewiora RP, Hurley MFD, Harbison AM, Fogarty CA, Coffland JE, Fadda E, et al. Citizen Scientists Create an Exascale Computer to Combat COVID-19. Biorxiv : the Preprint Server For Biology. PMID 32637963 DOI: 10.1101/2020.06.27.175430  0.668
2020 Cubuk J, Alston JJ, Incicco JJ, Singh S, Stuchell-Brereton MD, Ward MD, Zimmerman MI, Vithani N, Griffith D, Wagoner JA, Bowman GR, Hall KB, Soranno A, Holehouse AS. The SARS-CoV-2 nucleocapsid protein is dynamic, disordered, and phase separates with RNA. Biorxiv : the Preprint Server For Biology. PMID 32587966 DOI: 10.1101/2020.06.17.158121  0.638
2020 Porter JR, Meller A, Zimmerman MI, Greenberg MJ, Bowman GR. Conformational distributions of isolated myosin motor domains encode their mechanochemical properties. Elife. 9. PMID 32479265 DOI: 10.7554/Elife.55132  0.601
2020 Behring JB, van der Post S, Mooradian AD, Egan MJ, Zimmerman MI, Clements JL, Bowman GR, Held JM. Spatial and temporal alterations in protein structure by EGF regulate cryptic cysteine oxidation. Science Signaling. 13. PMID 31964804 DOI: 10.1126/Scisignal.Aay7315  0.59
2020 Wang W, Shin WJ, Zhang B, Choi Y, Yoo JS, Zimmerman MI, Frederick TE, Bowman GR, Gross ML, Leung DW, Jung JU, Amarasinghe GK. The Cap-Snatching SFTSV Endonuclease Domain Is an Antiviral Target. Cell Reports. 30: 153-163.e5. PMID 31914382 DOI: 10.1016/J.Celrep.2019.12.020  0.574
2020 Porter JR, Meller A, Zimmerman MI, Greenberg MJ, Bowman GR. Author response: Conformational distributions of isolated myosin motor domains encode their mechanochemical properties Elife. DOI: 10.7554/Elife.55132.Sa2  0.561
2020 Porter JR, Meller A, Zimmerman MI, Greenberg MJ, Bowman G. Myosin Motors’ Kinetic Diversity is Encoded by the Conformational Dynamics of the Motor Domain Biophysical Journal. 118: 434a. DOI: 10.1016/J.Bpj.2019.11.2436  0.58
2020 Zimmerman MI, Bowman G. Fast Conformational Searches to Characterize the Effects of Mutations on Complex Landscapes Biophysical Journal. 118: 205a-206a. DOI: 10.1016/J.Bpj.2019.11.1234  0.556
2019 Porter JR, Moeder KE, Sibbald CA, Zimmerman MI, Hart KM, Greenberg MJ, Bowman GR. Cooperative Changes in Solvent Exposure Identify Cryptic Pockets, Switches, and Allosteric Coupling. Biophysical Journal. PMID 30744991 DOI: 10.1016/J.Bpj.2018.11.3144  0.647
2019 Porter JR, Zimmerman MI, Bowman GR. Enspara: Modeling molecular ensembles with scalable data structures and parallel computing. The Journal of Chemical Physics. 150: 044108. PMID 30709308 DOI: 10.1063/1.5063794  0.627
2019 Porter JR, Moeder KE, Sibbald CA, Zimmerman MI, Hart KM, Greenberg MJ, Bowman GR. Cooperative changes in solvent exposure identify cryptic pockets, conformational switches and allosteric coupling Acta Crystallographica Section a Foundations and Advances. 75: a432-a432. DOI: 10.1107/S0108767319095795  0.565
2018 Zimmerman MI, Porter JR, Sun X, Silva RR, Bowman G. Choice of adaptive sampling strategy impacts state discovery, transition probabilities, and the apparent mechanism of conformational changes. Journal of Chemical Theory and Computation. PMID 30240203 DOI: 10.1021/Acs.Jctc.8B00500  0.605
2018 Frederick TE, Hart KM, Moeder KE, Ho CM, Zimmerman MI, Bowman GR. Boltzmann Docking Identifies Allosteric Small Molecule Modulators of Protein Activity Biophysical Journal. 114: 58a. DOI: 10.1016/J.Bpj.2017.11.369  0.593
2017 Zimmerman MI, Hart KM, Sibbald CA, Frederick TE, Jimah JR, Knoverek CR, Tolia NH, Bowman GR. Prediction of New Stabilizing Mutations Based on Mechanistic Insights from Markov State Models. Acs Central Science. 3: 1311-1321. PMID 29296672 DOI: 10.1016/J.Bpj.2017.11.2283  0.621
2017 Hart KM, Moeder KE, Ho CMW, Zimmerman MI, Frederick TE, Bowman GR. Designing small molecules to target cryptic pockets yields both positive and negative allosteric modulators. Plos One. 12: e0178678. PMID 28570708 DOI: 10.1371/Journal.Pone.0178678  0.616
2017 Zimmerman MI, Bowman GR. Fast Forward Protein Folding Biophysical Journal. 112: 323a. DOI: 10.1016/J.Bpj.2016.11.1750  0.625
2016 Zimmerman MI, Bowman GR. How to Run FAST Simulations. Methods in Enzymology. 578: 213-25. PMID 27497168 DOI: 10.1016/Bs.Mie.2016.05.032  0.623
2015 Zimmerman MI, Bowman GR. FAST Conformational Searches by Balancing Exploration/Exploitation Trade-Offs. Journal of Chemical Theory and Computation. PMID 26588361 DOI: 10.1021/Acs.Jctc.5B00737  0.639
2015 Huang D, Zimmerman MI, Martin PK, Nix AJ, Rosenberry TL, Paravastu AK. Antiparallel β-Sheet Structure within the C-Terminal Region of 42-Residue Alzheimer's Amyloid-β Peptides When They Form 150-kDa Oligomers. Journal of Molecular Biology. 427: 2319-28. PMID 25889972 DOI: 10.1016/J.Jmb.2015.04.004  0.643
2013 Cormier AR, Pang X, Zimmerman MI, Zhou HX, Paravastu AK. Molecular structure of RADA16-I designer self-assembling peptide nanofibers. Acs Nano. 7: 7562-72. PMID 23977885 DOI: 10.1021/Nn401562F  0.657
2013 Leonard SR, Cormier AR, Pang X, Zimmerman MI, Zhou HX, Paravastu AK. Solid-state NMR evidence for β-hairpin structure within MAX8 designer peptide nanofibers. Biophysical Journal. 105: 222-30. PMID 23823242 DOI: 10.1016/J.Bpj.2013.05.047  0.651
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