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Rob Knight - Publications

Affiliations: 
2001 University of California, San Diego, La Jolla, CA 
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20 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Tap J, Lejzerowicz F, Cotillard A, Pichaud M, McDonald D, Song SJ, Knight R, Veiga P, Derrien M. Global branches and local states of the human gut microbiome define associations with environmental and intrinsic factors. Nature Communications. 14: 3310. PMID 37339957 DOI: 10.1038/s41467-023-38558-7  0.718
2023 Taylor BC, Sheikh Andalibi M, Wandro S, Weldon KC, Sepich-Poore GD, Carpenter CS, Fraraccio S, Franklin D, Iudicello JE, Letendre S, Gianella S, Grant I, Ellis RJ, Heaton RK, Knight R, et al. Signatures of HIV and Major Depressive Disorder in the Plasma Microbiome. Microorganisms. 11. PMID 37110445 DOI: 10.3390/microorganisms11041022  0.695
2023 Koehler Leman J, Szczerbiak P, Renfrew PD, Gligorijevic V, Berenberg D, Vatanen T, Taylor BC, Chandler C, Janssen S, Pataki A, Carriero N, Fisk I, Xavier RJ, Knight R, Bonneau R, et al. Sequence-structure-function relationships in the microbial protein universe. Nature Communications. 14: 2351. PMID 37100781 DOI: 10.1038/s41467-023-37896-w  0.705
2022 Shaffer JP, Nothias LF, Thompson LR, Sanders JG, Salido RA, Couvillion SP, Brejnrod AD, Lejzerowicz F, Haiminen N, Huang S, Lutz HL, Zhu Q, Martino C, Morton JT, Karthikeyan S, ... ... Knight R, et al. Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity. Nature Microbiology. PMID 36443458 DOI: 10.1038/s41564-022-01266-x  0.721
2022 Aksenov AA, Salido RA, Melnik AV, Brennan C, Brejnrod A, Caraballo-Rodríguez AM, Gauglitz JM, Lejzerowicz F, Farmer DK, Vance ME, Knight R, Dorrestein PC. The molecular impact of life in an indoor environment. Science Advances. 8: eabn8016. PMID 35749501 DOI: 10.1126/sciadv.abn8016  0.681
2022 Zhu Q, Huang S, Gonzalez A, McGrath I, McDonald D, Haiminen N, Armstrong G, Vázquez-Baeza Y, Yu J, Kuczynski J, Sepich-Poore GD, Swafford AD, Das P, Shaffer JP, Lejzerowicz F, ... ... Knight R, et al. Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy. Msystems. e0016722. PMID 35369727 DOI: 10.1128/msystems.00167-22  0.724
2021 Dokoshi T, Seidman JS, Cavagnero KJ, Li F, Liggins MC, Taylor BC, Olvera J, Knight R, Chang JT, Salzman NH, Gallo RL. Skin inflammation activates intestinal stromal fibroblasts and promotes colitis. The Journal of Clinical Investigation. 131. PMID 34720087 DOI: 10.1172/JCI147614  0.685
2021 Cotillard A, Cartier-Meheust A, Litwin NS, Chaumont S, Saccareau M, Lejzerowicz F, Tap J, Koutnikova H, Lopez DG, McDonald D, Song SJ, Knight R, Derrien M, Veiga P. A posteriori dietary patterns better explain variations of the gut microbiome than individual markers in the American Gut Project. The American Journal of Clinical Nutrition. PMID 34617562 DOI: 10.1093/ajcn/nqab332  0.693
2021 Gligorijević V, Renfrew PD, Kosciolek T, Leman JK, Berenberg D, Vatanen T, Chandler C, Taylor BC, Fisk IM, Vlamakis H, Xavier RJ, Knight R, Cho K, Bonneau R. Structure-based protein function prediction using graph convolutional networks. Nature Communications. 12: 3168. PMID 34039967 DOI: 10.1038/s41467-021-23303-9  0.7
2021 Gligorijević V, Renfrew PD, Kosciolek T, Leman JK, Berenberg D, Vatanen T, Chandler C, Taylor BC, Fisk IM, Vlamakis H, Xavier RJ, Knight R, Cho K, Bonneau R. Structure-based protein function prediction using graph convolutional networks. Nature Communications. 12: 3168. PMID 34039967 DOI: 10.1038/s41467-021-23303-9  0.7
2021 Jung CE, Estaki M, Chopyk J, Taylor BC, Gonzalez A, McDonald D, Shin J, Ferrante K, Wasenda E, Lippmann Q, Knight R, Pride D, Lukacz ES. Impact of Vaginal Estrogen on the Urobiome in Postmenopausal Women With Recurrent Urinary Tract Infection. Female Pelvic Medicine & Reconstructive Surgery. PMID 33978602 DOI: 10.1097/SPV.0000000000001051  0.671
2021 Jung CE, Estaki M, Chopyk J, Taylor BC, Gonzalez A, McDonald D, Shin J, Ferrante K, Wasenda E, Lippmann Q, Knight R, Pride D, Lukacz ES. Impact of Vaginal Estrogen on the Urobiome in Postmenopausal Women With Recurrent Urinary Tract Infection. Female Pelvic Medicine & Reconstructive Surgery. PMID 33978602 DOI: 10.1097/SPV.0000000000001051  0.671
2020 Taylor BC, Weldon KC, Ellis RJ, Franklin D, McDonald D, Humphrey G, Bryant M, Toronczak J, Schwartz T, Iudicello J, Heaton R, Grant I, Gianella S, Letendre S, Swafford A, ... ... Knight R, et al. Reduced Independence in Daily Living Is Associated with the Gut Microbiome in People with HIV and HCV. Msystems. 5. PMID 33051377 DOI: 10.1128/mSystems.00528-20  0.693
2020 Taylor BC, Weldon KC, Ellis RJ, Franklin D, Groth T, Gentry EC, Tripathi A, McDonald D, Humphrey G, Bryant M, Toronczak J, Schwartz T, Oliveira MF, Heaton R, Grant I, ... ... Knight R, et al. Depression in Individuals Coinfected with HIV and HCV Is Associated with Systematic Differences in the Gut Microbiome and Metabolome. Msystems. 5. PMID 32994287 DOI: 10.1128/mSystems.00465-20  0.692
2020 Martino C, Kellman BP, Sandoval DR, Clausen TM, Marotz CA, Song SJ, Wandro S, Zaramela LS, Salido Benítez RA, Zhu Q, Armingol E, Vázquez-Baeza Y, McDonald D, Sorrentino JT, Taylor B, ... ... Knight R, et al. Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity. Biorxiv : the Preprint Server For Biology. PMID 32839779 DOI: 10.1101/2020.08.17.238444  0.714
2020 Taylor BC, Lejzerowicz F, Poirel M, Shaffer JP, Jiang L, Aksenov A, Litwin N, Humphrey G, Martino C, Miller-Montgomery S, Dorrestein PC, Veiga P, Song SJ, McDonald D, Derrien M, ... Knight R, et al. Consumption of Fermented Foods Is Associated with Systematic Differences in the Gut Microbiome and Metabolome. Msystems. 5. PMID 32184365 DOI: 10.1128/mSystems.00901-19  0.729
2020 Litwin N, Taylor B, Lejzerowicz F, Poirel M, Shaffer J, Jiang L, Aksenov A, Humphery G, Martino C, Miller-Montgomery S, Dorrestein P, Veiga P, Song SJ, McDonald D, Derrien M, ... Knight R, et al. Consumption of Fermented Plant Foods Is Associated with Systematic Differences in the Human Gut Microbiome and Metabolome Current Developments in Nutrition. 4: 1573-1573. DOI: 10.1093/cdn/nzaa062_030  0.706
2020 Dokoshi T, Li F, Liggins M, Williams M, Seidman J, Knight R, Taylor B, Chang J, Olvera J, Gallo R. 226 Skin controls gut immune function through innate immune ECM cross talk Journal of Investigative Dermatology. 140: S26. DOI: 10.1016/j.jid.2020.03.231  0.677
2019 Sharon G, Cruz NJ, Kang DW, Gandal MJ, Wang B, Kim YM, Zink EM, Casey CP, Taylor BC, Lane CJ, Bramer LM, Isern NG, Hoyt DW, Noecker C, Sweredoski MJ, ... ... Knight R, et al. Human Gut Microbiota from Autism Spectrum Disorder Promote Behavioral Symptoms in Mice. Cell. 177: 1600-1618.e17. PMID 31150625 DOI: 10.1016/J.Cell.2019.05.004  0.692
2018 Knight R, Vrbanac A, Taylor BC, Aksenov A, Callewaert C, Debelius J, Gonzalez A, Kosciolek T, McCall LI, McDonald D, Melnik AV, Morton JT, Navas J, Quinn RA, Sanders JG, et al. Best practices for analysing microbiomes. Nature Reviews. Microbiology. PMID 29795328 DOI: 10.1038/S41579-018-0029-9  0.703
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