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Yonggang Shi - Publications

Affiliations: 
University of Southern California, Los Angeles, CA, United States 
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61 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Huang S, Zhong L, Shi Y. Automated Mapping of Residual Distortion Severity in Diffusion MRI. Computational Diffusion Mri : Miccai Workshop. 14328: 58-69. PMID 38500569 DOI: 10.1007/978-3-031-47292-3_6  0.31
2023 Zhang J, Shi Y. Personalized Patch-based Normality Assessment of Brain Atrophy in Alzheimer's Disease. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 14224: 55-62. PMID 38501074 DOI: 10.1007/978-3-031-43904-9_6  0.328
2021 Zhao L, Matloff W, Shi Y, Cabeen RP, Toga AW. Mapping Complex Brain Torque Components and Their Genetic Architecture and Phenomic Associations in 24,112 Individuals. Biological Psychiatry. PMID 35027165 DOI: 10.1016/j.biopsych.2021.11.002  0.38
2021 Hall JR, Johnson LA, Zhang F, Petersen M, Toga AW, Shi Y, Mason D, Rissman RA, Yaffe K, O'Bryant SE. Using Fractional Anisotropy Imaging to Detect Mild Cognitive Impairment and Alzheimer's Disease among Mexican Americans and Non-Hispanic Whites: A HABLE Study. Dementia and Geriatric Cognitive Disorders. 1-8. PMID 34569492 DOI: 10.1159/000518102  0.321
2021 Schilling KG, Rheault F, Petit L, Hansen CB, Nath V, Yeh FC, Girard G, Barakovic M, Rafael-Patino J, Yu T, Fischi-Gomez E, Pizzolato M, Ocampo-Pineda M, Schiavi S, Canales-Rodríguez EJ, ... ... Shi Y, et al. Tractography dissection variability: what happens when 42 groups dissect 14 white matter bundles on the same dataset? Neuroimage. 118502. PMID 34433094 DOI: 10.1016/j.neuroimage.2021.118502  0.409
2021 O'Bryant SE, Johnson LA, Barber RC, Braskie MN, Christian B, Hall JR, Hazra N, King K, Kothapalli D, Large S, Mason D, Matsiyevskiy E, McColl R, Nandy R, Palmer R, ... ... Shi Y, et al. The Health & Aging Brain among Latino Elders (HABLE) study methods and participant characteristics. Alzheimer's & Dementia (Amsterdam, Netherlands). 13: e12202. PMID 34189247 DOI: 10.1002/dad2.12202  0.34
2021 Duffy BA, Zhao L, Sepehrband F, Min J, Wang DJ, Shi Y, Toga AW, Kim H. Retrospective motion artifact correction of structural MRI images using deep learning improves the quality of cortical surface reconstructions. Neuroimage. 117756. PMID 33460797 DOI: 10.1016/j.neuroimage.2021.117756  0.376
2020 Lynch KM, Page KA, Shi Y, Xiang AH, Toga AW, Clark KA. The effect of body mass index on hippocampal morphology and memory performance in late childhood and adolescence. Hippocampus. PMID 33174346 DOI: 10.1002/hipo.23280  0.317
2020 Xia Y, Shi Y. Groupwise Track Filtering via Iterative Message Passing and Pruning. Neuroimage. 117147. PMID 32673747 DOI: 10.1016/j.neuroimage.2020.117147  0.321
2019 Xu F, Ge X, Shi Y, Zhang Z, Tang Y, Lin X, Teng G, Zang F, Gao N, Liu H, Toga AW, Liu S. Morphometric development of the human fetal cerebellum during the early second trimester. Neuroimage. 116372. PMID 31751665 DOI: 10.1016/j.neuroimage.2019.116372  0.365
2019 Nath V, Schilling KG, Parvathaneni P, Huo Y, Blaber JA, Hainline AE, Barakovic M, Romascano D, Rafael-Patino J, Frigo M, Girard G, Thiran JP, Daducci A, Rowe M, Rodrigues P, ... ... Shi Y, et al. Tractography reproducibility challenge with empirical data (TraCED): The 2017 ISMRM diffusion study group challenge. Journal of Magnetic Resonance Imaging : Jmri. PMID 31179595 DOI: 10.1002/Jmri.26794  0.393
2018 Qiao Y, Sun W, Shi Y. FOD-based Registration for Susceptibility Distortion Correction in Connectome Imaging. Connectomics in Neuroimaging : Second International Workshop, Cni 2018, Held in Conjunction With Miccai 2018, Granada, Spain, September 20, 2018 : Proceedings. Cni (Workshop) (2nd : 2018 : Granada, Spain). 11083: 11-19. PMID 31559395 DOI: 10.1007/978-3-030-00755-3_2  0.318
2018 Schilling KG, Nath V, Hansen C, Parvathaneni P, Blaber J, Gao Y, Neher P, Aydogan DB, Shi Y, Ocampo-Pineda M, Schiavi S, Daducci A, Girard G, Barakovic M, Rafael-Patino J, et al. Limits to anatomical accuracy of diffusion tractography using modern approaches. Neuroimage. PMID 30317017 DOI: 10.1016/J.Neuroimage.2018.10.029  0.463
2018 Lynch KM, Shi Y, Toga AW, Clark KA. Hippocampal Shape Maturation in Childhood and Adolescence. Cerebral Cortex (New York, N.Y. : 1991). PMID 30272143 DOI: 10.1093/Cercor/Bhy244  0.389
2018 Wang J, Aydogan DB, Varma R, Toga AW, Shi Y. Modeling topographic regularity in structural brain connectivity with application to tractogram filtering. Neuroimage. PMID 30081193 DOI: 10.1016/j.neuroimage.2018.07.068  0.437
2018 Aydogan DB, Jacobs R, Dulawa S, Thompson SL, Francois MC, Toga AW, Dong H, Knowles JA, Shi Y. When tractography meets tracer injections: a systematic study of trends and variation sources of diffusion-based connectivity. Brain Structure & Function. PMID 29663135 DOI: 10.1007/S00429-018-1663-8  0.42
2018 Gahm JK, Shi Y. Riemannian metric optimization on surfaces (RMOS) for intrinsic brain mapping in the Laplace-Beltrami embedding space. Medical Image Analysis. 46: 189-201. PMID 29574399 DOI: 10.1016/J.Media.2018.03.004  0.331
2018 Tang Y, Zhao L, Lou Y, Shi Y, Fang R, Lin X, Liu S, Toga A. Brain structure differences between Chinese and Caucasian cohorts: A comprehensive morphometry study. Human Brain Mapping. PMID 29400417 DOI: 10.1002/hbm.23994  0.423
2017 Tang Y, Sun W, Toga AW, Ringman JM, Shi Y. A probabilistic atlas of human brainstem pathways based on connectome imaging data. Neuroimage. PMID 29253653 DOI: 10.1016/j.neuroimage.2017.12.042  0.442
2017 Gahm JK, Shi Y. Holistic Mapping of Striatum Surfaces in the Laplace-Beltrami Embedding Space. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 10433: 21-30. PMID 29046902 DOI: 10.1007/978-3-319-66182-7_3  0.304
2017 Wang J, Aydogan DB, Varma R, Toga AW, Shi Y. Topographic Regularity for Tract Filtering in Brain Connectivity. Information Processing in Medical Imaging : Proceedings of the ... Conference. 10265: 263-274. PMID 28943732 DOI: 10.1007/978-3-319-59050-9_21  0.443
2016 Gahm JK, Shi Y. Riemannian Metric Optimization for Connectivity-driven Surface Mapping. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 9900: 228-236. PMID 28083569 DOI: 10.1007/978-3-319-46720-7_27  0.322
2016 Li J, Gahm JK, Shi Y, Toga AW. Topological false discovery rates for brain mapping based on signal height. Neuroimage. PMID 27838286 DOI: 10.1016/J.Neuroimage.2016.09.045  0.367
2016 Leng Y, Shi Y, Yu Q, Van Horn JD, Tang H, Li J, Xu W, Ge X, Tang Y, Han Y, Zhang D, Xiao M, Zhang H, Pang Z, Toga AW, et al. Phenotypic and Genetic Correlations Between the Lobar Segments of the Inferior Fronto-occipital Fasciculus and Attention. Scientific Reports. 6: 33015. PMID 27597294 DOI: 10.1038/srep33015  0.306
2016 Li J, Shi Y, Toga AW. Mapping Brain Anatomical Connectivity Using Diffusion Magnetic Resonance Imaging: Structural connectivity of the human brain. Ieee Signal Processing Magazine. 33: 36-51. PMID 27212872 DOI: 10.1109/MSP.2015.2510024  0.425
2016 Li J, Shi Y, Toga AW. Transformation Invariant Control of Voxel-Wise False Discovery Rate. Ieee Transactions On Medical Imaging. PMID 27101602 DOI: 10.1109/TMI.2016.2554554  0.402
2015 Kammen A, Law M, Tjan BS, Toga AW, Shi Y. Automated Retinofugal Visual Pathway Reconstruction with Multi-shell HARDI and FOD-based Analysis. Neuroimage. PMID 26551261 DOI: 10.1016/j.neuroimage.2015.11.005  0.393
2015 Li J, Shi Y, Toga AW. Controlling False Discovery Rate in Signal Space for Transformation-Invariant Thresholding of Statistical Maps. Information Processing in Medical Imaging : Proceedings of the ... Conference. 24: 125-36. PMID 26213450 DOI: 10.1007/978-3-319-19992-4_10  0.406
2015 Ge X, Shi Y, Li J, Zhang Z, Lin X, Zhan J, Ge H, Xu J, Yu Q, Leng Y, Teng G, Feng L, Meng H, Tang Y, Zang F, et al. Development of the human fetal hippocampal formation during early second trimester. Neuroimage. PMID 26123377 DOI: 10.1016/j.neuroimage.2015.06.055  0.375
2014 Shi Y, Li J, Toga AW. Persistent Reeb Graph Matching for Fast Brain Search. Machine Learning in Medical Imaging. Mlmi (Workshop), Author. 8679: 306-313. PMID 25594076 DOI: 10.1007/978-3-319-10581-9_38  0.433
2014 Li J, Shi Y, Toga AW. ROTATIONAL GRADIENT FIELD FOR INTERPOLATION OF FIBER ORIENTATION DISTRIBUTION IN CONNECTIVITY ANALYSIS. Proceedings / Ieee International Symposium On Biomedical Imaging: From Nano to Macro. Ieee International Symposium On Biomedical Imaging. 2014: 1051-1054. PMID 25383160 DOI: 10.1109/ISBI.2014.6868054  0.442
2014 Li J, Shi Y, Toga AW. Diffusion of fiber orientation distribution functions with a rotation-induced riemannian metric. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 17: 249-56. PMID 25320806 DOI: 10.1007/978-3-319-10443-0_32  0.428
2014 Jin Y, Shi Y, Zhan L, Gutman BA, de Zubicaray GI, McMahon KL, Wright MJ, Toga AW, Thompson PM. Automatic clustering of white matter fibers in brain diffusion MRI with an application to genetics. Neuroimage. 100: 75-90. PMID 24821529 DOI: 10.1016/J.Neuroimage.2014.04.048  0.447
2014 Shi Y, Lai R, Wang DJ, Pelletier D, Mohr D, Sicotte N, Toga AW. Metric optimization for surface analysis in the Laplace-Beltrami embedding space. Ieee Transactions On Medical Imaging. 33: 1447-63. PMID 24686245 DOI: 10.1109/Tmi.2014.2313812  0.459
2014 Labus JS, Dinov ID, Jiang Z, Ashe-McNalley C, Zamanyan A, Shi Y, Hong JY, Gupta A, Tillisch K, Ebrat B, Hobel S, Gutman BA, Joshi S, Thompson PM, Toga AW, et al. Irritable bowel syndrome in female patients is associated with alterations in structural brain networks. Pain. 155: 137-49. PMID 24076048 DOI: 10.1016/J.Pain.2013.09.020  0.373
2014 Li J, Shi Y, Tran G, Dinov I, Wang DJ, Toga A. Fast local trust region technique for diffusion tensor registration using exact reorientation and regularization. Ieee Transactions On Medical Imaging. 33: 1005-22. PMID 23880040 DOI: 10.1109/Tmi.2013.2274051  0.414
2013 Li J, Shi Y, Dinov ID, Toga AW. Locally Weighted Multi-atlas Construction. Multimodal Brain Image Analysis : Third International Workshop, Mbia 2013, Held in Conjunction With Miccai 2013, Nagoya, Japan, September 22, 2013 : Proceedings / Li Shen, Tianming Liu, Pew-Thian Yap, Heng Huang, Dinggang Shen, Carl-Fre.... 8159: 1-8. PMID 25392851 DOI: 10.1007/978-3-319-02126-3_1  0.394
2013 Shi Y, Lai R, Toga AW. Conformal mapping via metric optimization with application for cortical label fusion. Information Processing in Medical Imaging : Proceedings of the ... Conference. 23: 244-55. PMID 24683973 DOI: 10.1007/978-3-642-38868-2_21  0.446
2013 Li J, Jin Y, Shi Y, Dinov ID, Wang DJ, Toga AW, Thompson PM. Voxelwise spectral diffusional connectivity and its applications to Alzheimer's disease and intelligence prediction. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 16: 655-62. PMID 24505723 DOI: 10.1007/978-3-642-40811-3_82  0.409
2013 Jiang Z, Dinov ID, Labus J, Shi Y, Zamanyan A, Gupta A, Ashe-McNalley C, Hong JY, Tillisch K, Toga AW, Mayer EA. Sex-related differences of cortical thickness in patients with chronic abdominal pain. Plos One. 8: e73932. PMID 24040118 DOI: 10.1371/Journal.Pone.0073932  0.347
2013 Zhan J, Dinov ID, Li J, Zhang Z, Hobel S, Shi Y, Lin X, Zamanyan A, Feng L, Teng G, Fang F, Tang Y, Zang F, Toga AW, Liu S. Spatial-temporal atlas of human fetal brain development during the early second trimester. Neuroimage. 82: 115-26. PMID 23727529 DOI: 10.1016/j.neuroimage.2013.05.063  0.434
2013 Shi Y, Lai R, Toga AW. Cortical surface reconstruction via unified Reeb analysis of geometric and topological outliers in magnetic resonance images. Ieee Transactions On Medical Imaging. 32: 511-30. PMID 23086519 DOI: 10.1109/Tmi.2012.2224879  0.465
2012 Li J, Shi Y, Tran G, Dinov I, Wang DJ, Toga AW. Fast diffusion tensor registration with exact reorientation and regularization. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 15: 138-45. PMID 23286042  0.413
2012 Shi Y, Lai R, Toga AW. Unified geometry and topology correction for cortical surface reconstruction with intrinsic reeb analysis. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 15: 601-8. PMID 23285601  0.426
2011 Jin Y, Shi Y, Joshi SH, Jahanshad N, Zhan L, de Zubicaray GI, McMahon KL, Martin NG, Wright MJ, Toga AW, Thompson PM. Heritability of White Matter Fiber Tract Shapes: A HARDI Study of 198 Twins. Multimodal Brain Image Analysis : First International Workshop, Mbia 2011, Held in Conjunction With Miccai 2011, Toronto, Canada, September 18, 2011 : Proceedings / Tianming Liu ... [Et Al.], (Eds.). 2011: 35-43. PMID 25346947 DOI: 10.1007/978-3-642-24446-9_5  0.448
2011 Shi Y, Lai R, Gill R, Pelletier D, Mohr D, Sicotte N, Toga AW. Conformal metric optimization on surface (CMOS) for deformation and mapping in Laplace-Beltrami embedding space. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 14: 327-34. PMID 21995045  0.426
2011 Shi Y, Lai R, Toga AW. CoRPORATE: cortical reconstruction by pruning outliers with Reeb analysis and topology-preserving evolution. Information Processing in Medical Imaging : Proceedings of the ... Conference. 22: 233-44. PMID 21761660  0.444
2011 Costafreda SG, Dinov ID, Tu Z, Shi Y, Liu CY, Kloszewska I, Mecocci P, Soininen H, Tsolaki M, Vellas B, Wahlund LO, Spenger C, Toga AW, Lovestone S, Simmons A. Automated hippocampal shape analysis predicts the onset of dementia in mild cognitive impairment. Neuroimage. 56: 212-9. PMID 21272654 DOI: 10.1016/J.Neuroimage.2011.01.050  0.331
2010 Shi Y, Sun B, Lai R, Dinov I, Toga AW. Automated sulci identification via intrinsic modeling of cortical anatomy. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 13: 49-56. PMID 20879382 DOI: 10.1007/978-3-642-15711-0_7  0.439
2010 Shi Y, Lai R, Morra JH, Dinov I, Thompson PM, Toga AW. Robust surface reconstruction via Laplace-Beltrami eigen-projection and boundary deformation. Ieee Transactions On Medical Imaging. 29: 2009-22. PMID 20624704 DOI: 10.1109/Tmi.2010.2057441  0.397
2010 Patel V, Shi Y, Thompson PM, Toga AW. Mesh-based spherical deconvolution: a flexible approach to reconstruction of non-negative fiber orientation distributions. Neuroimage. 51: 1071-81. PMID 20206705 DOI: 10.1016/J.Neuroimage.2010.02.060  0.395
2009 Lai R, Shi Y, Dinov I, Chan TF, Toga AW. LAPLACE-BELTRAMI NODAL COUNTS: A NEW SIGNATURE FOR 3D SHAPE ANALYSIS. Proceedings / Ieee International Symposium On Biomedical Imaging: From Nano to Macro. Ieee International Symposium On Biomedical Imaging. 2009: 694-697. PMID 21339849 DOI: 10.1109/ISBI.2009.5193142  0.344
2009 Shi Y, Dinov I, Toga AW. Cortical shape analysis in the Laplace-Beltrami feature space. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 12: 208-15. PMID 20426114 DOI: 10.1007/978-3-642-04271-3_26  0.39
2009 Shi Y, Morra JH, Thompson PM, Toga AW. Inverse-consistent surface mapping with Laplace-Beltrami eigen-features. Information Processing in Medical Imaging : Proceedings of the ... Conference. 21: 467-78. PMID 19694286 DOI: 10.1007/978-3-642-02498-6_39  0.435
2009 Leporé N, Shi Y, Lepore F, Fortin M, Voss P, Chou YY, Lord C, Lassonde M, Dinov ID, Toga AW, Thompson PM. Pattern of hippocampal shape and volume differences in blind subjects. Neuroimage. 46: 949-57. PMID 19285559 DOI: 10.1016/J.Neuroimage.2009.01.071  0.431
2009 Shi Y, Tu Z, Reiss AL, Dutton RA, Lee AD, Galaburda AM, Dinov I, Thompson PM, Toga AW. Joint sulcal detection on cortical surfaces with graphical models and boosted priors. Ieee Transactions On Medical Imaging. 28: 361-73. PMID 19244008 DOI: 10.1109/Tmi.2008.2004402  0.406
2008 Shi Y, Lai R, Krishna S, Sicotte N, Dinov I, Toga AW. Anisotropic Laplace-Beltrami Eigenmaps: Bridging Reeb Graphs and Skeletons. Proceedings / Cvpr, Ieee Computer Society Conference On Computer Vision and Pattern Recognition. Ieee Computer Society Conference On Computer Vision and Pattern Recognition. 2008: 1-7. PMID 21339850 DOI: 10.1109/CVPRW.2008.4563018  0.377
2008 Shi Y, Lai R, Kern K, Sicotte N, Dinov I, Toga AW. Harmonic surface mapping with Laplace-Beltrami eigenmaps. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 11: 147-54. PMID 18982600 DOI: 10.1007/978-3-540-85990-1_18  0.441
2007 Shi Y, Tu Z, Reiss AL, Dutton RA, Lee AD, Galaburda AM, Dinov I, Thompson PM, Toga AW. Joint sulci detection using graphical models and boosted priors. Information Processing in Medical Imaging : Proceedings of the ... Conference. 20: 98-109. PMID 17633692 DOI: 10.1007/978-3-540-73273-0_9  0.396
2007 Shi Y, Thompson PM, de Zubicaray GI, Rose SE, Tu Z, Dinov I, Toga AW. Direct mapping of hippocampal surfaces with intrinsic shape context. Neuroimage. 37: 792-807. PMID 17625918 DOI: 10.1016/J.Neuroimage.2007.05.016  0.443
2007 Shi Y, Thompson PM, Dinov I, Osher S, Toga AW. Direct cortical mapping via solving partial differential equations on implicit surfaces. Medical Image Analysis. 11: 207-23. PMID 17379568 DOI: 10.1016/J.Media.2007.02.001  0.416
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