| Year |
Citation |
Score |
| 2023 |
James KN, Chowdhury S, Ding Y, Batalov S, Watkins K, Kwon YH, Van Der Kraan L, Ellsworth K, Kingsmore SF, Guidugli L. Genome sequencing detects a wide range of clinically relevant copy number variants and other genomic alterations. Genetics in Medicine : Official Journal of the American College of Medical Genetics. 101006. PMID 37869996 DOI: 10.1016/j.gim.2023.101006 |
0.359 |
|
| 2023 |
Kingsmore SF, Smith LD, Kunard CM, Bainbridge M, Batalov S, Benson W, Blincow E, Caylor S, Chambers C, Del Angel G, Dimmock DP, Ding Y, Ellsworth K, Feigenbaum A, Frise E, et al. Response to Grosse et al. American Journal of Human Genetics. 110: 1017. PMID 37267897 DOI: 10.1016/j.ajhg.2023.05.004 |
0.164 |
|
| 2023 |
Owen MJ, Batalov S, Ellsworth KA, Wright M, Breeding S, Hugh K, Kingsmore SF, Ding Y. Rapid Whole Genome Sequencing for Diagnosis of Single Locus Genetic Diseases in Critically Ill Children. Methods in Molecular Biology (Clifton, N.J.). 2621: 217-239. PMID 37041447 DOI: 10.1007/978-1-0716-2950-5_12 |
0.355 |
|
| 2023 |
Ding Y, Owen M, Le J, Batalov S, Chau K, Kwon YH, Van Der Kraan L, Bezares-Orin Z, Zhu Z, Veeraraghavan N, Nahas S, Bainbridge M, Gleeson J, Baer RJ, Bandoli G, et al. Scalable, high quality, whole genome sequencing from archived, newborn, dried blood spots. Npj Genomic Medicine. 8: 5. PMID 36788231 DOI: 10.1038/s41525-023-00349-w |
0.312 |
|
| 2023 |
Owen MJ, Wright MS, Batalov S, Kwon Y, Ding Y, Chau KK, Chowdhury S, Sweeney NM, Kiernan E, Richardson A, Batton E, Baer RJ, Bandoli G, Gleeson JG, Bainbridge M, et al. Reclassification of the Etiology of Infant Mortality With Whole-Genome Sequencing. Jama Network Open. 6: e2254069. PMID 36757698 DOI: 10.1001/jamanetworkopen.2022.54069 |
0.276 |
|
| 2023 |
Vijayaraghavan P, Batalov S, Ding Y, Sanford E, Kingsmore SF, Dimmock D, Hobbs C, Bainbridge M. The Genomic landscape of short tandem repeats across multiple ancestries. Plos One. 18: e0279430. PMID 36701310 DOI: 10.1371/journal.pone.0279430 |
0.39 |
|
| 2022 |
Kingsmore SF, Smith LD, Kunard CM, Bainbridge M, Batalov S, Benson W, Blincow E, Caylor S, Chambers C, Del Angel G, Dimmock DP, Ding Y, Ellsworth K, Feigenbaum A, Frise E, et al. A genome sequencing system for universal newborn screening, diagnosis, and precision medicine for severe genetic diseases. American Journal of Human Genetics. PMID 36007526 DOI: 10.1016/j.ajhg.2022.08.003 |
0.318 |
|
| 2022 |
Kingsmore SF, Smith LD, Kunard CM, Bainbridge M, Batalov S, Benson W, Blincow E, Caylor S, Chambers C, Del Angel G, Dimmock DP, Ding Y, Ellsworth K, Feigenbaum A, Frise E, et al. A genome sequencing system for universal newborn screening, diagnosis, and precision medicine for severe genetic diseases. Am J Hum Genet.. 109: 1605-1619. PMID 36007526 DOI: 10.1016/j.ajhg.2022.08.003 |
0.351 |
|
| 2022 |
Owen MJ, Lefebvre S, Hansen C, Kunard CM, Dimmock DP, Smith LD, Scharer G, Mardach R, Willis MJ, Feigenbaum A, Niemi AK, Ding Y, Van Der Kraan L, Ellsworth K, Guidugli L, ... ... Batalov S, et al. An automated 13.5 hour system for scalable diagnosis and acute management guidance for genetic diseases Nat Commun .. 13: 4057. PMID 35882841 DOI: 10.1038/s41467-022-31446-6 |
0.323 |
|
| 2022 |
Owen MJ, Lefebvre S, Hansen C, Kunard CM, Dimmock DP, Smith LD, Scharer G, Mardach R, Willis MJ, Feigenbaum A, Niemi AK, Ding Y, Van Der Kraan L, Ellsworth K, Guidugli L, ... ... Batalov S, et al. An automated 13.5 hour system for scalable diagnosis and acute management guidance for genetic diseases. Nature Communications. 13: 4057. PMID 35882841 DOI: 10.1038/s41467-022-31446-6 |
0.323 |
|
| 2021 |
Owen MJ, Niemi AK, Dimmock DP, Speziale M, Nespeca M, Chau KK, Van Der Kraan L, Wright MS, Hansen C, Veeraraghavan N, Ding Y, Lenberg J, Chowdhury S, Hobbs CA, Batalov S, et al. Rapid Sequencing-Based Diagnosis of Thiamine Metabolism Dysfunction Syndrome. The New England Journal of Medicine. 384: 2159-2161. PMID 34077649 DOI: 10.1056/NEJMc2100365 |
0.23 |
|
| 2021 |
Sweeney NM, Nahas SA, Chowdhury S, Batalov S, Clark M, Caylor S, Cakici J, Nigro JJ, Ding Y, Veeraraghavan N, Hobbs C, Dimmock D, Kingsmore SF. Author Correction: Rapid whole genome sequencing impacts care and resource utilization in infants with congenital heart disease. Npj Genomic Medicine. 6: 38. PMID 34039997 DOI: 10.1038/s41525-021-00205-9 |
0.307 |
|
| 2021 |
Sweeney NM, Nahas SA, Chowdhury S, Batalov S, Clark M, Caylor S, Cakici J, Nigro JJ, Ding Y, Veeraraghavan N, Hobbs C, Dimmock D, Kingsmore SF. Publisher Correction: Rapid whole genome sequencing impacts care and resource utilization in infants with congenital heart disease. Npj Genomic Medicine. 6: 39. PMID 34039980 DOI: 10.1038/s41525-021-00206-8 |
0.308 |
|
| 2021 |
Sweeney NM, Nahas SA, Chowdhury S, Batalov S, Clark M, Caylor S, Cakici J, Nigro JJ, Ding Y, Veeraraghavan N, Hobbs C, Dimmock D, Kingsmore SF. Rapid whole genome sequencing impacts care and resource utilization in infants with congenital heart disease. Npj Genomic Medicine. 6: 29. PMID 33888711 DOI: 10.1038/s41525-021-00192-x |
0.314 |
|
| 2020 |
James KN, Clark MM, Camp B, Kint C, Schols P, Batalov S, Briggs B, Veeraraghavan N, Chowdhury S, Kingsmore SF. Partially automated whole-genome sequencing reanalysis of previously undiagnosed pediatric patients can efficiently yield new diagnoses. Npj Genomic Medicine. 5: 33. PMID 32821428 DOI: 10.1038/S41525-020-00140-1 |
0.337 |
|
| 2019 |
Kingsmore SF, Cakici JA, Clark MM, Gaughran M, Feddock M, Batalov S, Bainbridge MN, Carroll J, Caylor SA, Clarke C, Ding Y, Ellsworth K, Farnaes L, Hildreth A, Hobbs C, et al. A Randomized, Controlled Trial of the Analytic and Diagnostic Performance of Singleton and Trio, Rapid Genome and Exome Sequencing in Ill Infants. American Journal of Human Genetics. PMID 31564432 DOI: 10.1016/J.Ajhg.2019.08.009 |
0.318 |
|
| 2019 |
Clark MM, Hildreth A, Batalov S, Ding Y, Chowdhury S, Watkins K, Ellsworth K, Camp B, Kint CI, Yacoubian C, Farnaes L, Bainbridge MN, Beebe C, Braun JJA, Bray M, et al. Diagnosis of genetic diseases in seriously ill children by rapid whole-genome sequencing and automated phenotyping and interpretation. Science Translational Medicine. 11. PMID 31019026 DOI: 10.1126/Scitranslmed.Aat6177 |
0.358 |
|
| 2017 |
Hildreth A, Wigby K, Chowdhury S, Nahas S, Barea J, Ordonez P, Batalov S, Dimmock DM, Investigators R, Kingsmore SF. Rapid whole genome sequencing identifies a novel homozygous NPC1 variant associated with Niemann-Pick Type C1 Disease in a 7 week old male with cholestasis. Cold Spring Harbor Molecular Case Studies. PMID 28550066 DOI: 10.1101/mcs.a001966 |
0.339 |
|
| 2014 |
Xu X, Jaeger ER, Wang X, Lagler-Ferrez E, Batalov S, Mathis NL, Wiltshire T, Walker JR, Cooke MP, Sauer K, Huang YH. Mst1 directs Myosin IIa partitioning of low and higher affinity integrins during T cell migration. Plos One. 9: e105561. PMID 25133611 DOI: 10.1371/Journal.Pone.0105561 |
0.456 |
|
| 2014 |
Bill A, Rosethorne EM, Kent TC, Fawcett L, Burchell L, van Diepen MT, Marelli A, Batalov S, Miraglia L, Orth AP, Renaud NA, Charlton SJ, Gosling M, Gaither LA, Groot-Kormelink PJ. High throughput mutagenesis for identification of residues regulating human prostacyclin (hIP) receptor expression and function. Plos One. 9: e97973. PMID 24886841 DOI: 10.1371/journal.pone.0097973 |
0.306 |
|
| 2010 |
Gonzalez R, Jennings LL, Knuth M, Orth AP, Klock HE, Ou W, Feuerhelm J, Hull MV, Koesema E, Wang Y, Zhang J, Wu C, Cho CY, Su AI, Batalov S, et al. Screening the mammalian extracellular proteome for regulators of embryonic human stem cell pluripotency. Proceedings of the National Academy of Sciences of the United States of America. 107: 3552-7. PMID 20133595 DOI: 10.1073/Pnas.0914019107 |
0.441 |
|
| 2009 |
Barouch-Bentov R, Che J, Lee CC, Yang Y, Herman A, Jia Y, Velentza A, Watson J, Sternberg L, Kim S, Ziaee N, Miller A, Jackson C, Fujimoto M, Young M, ... Batalov S, et al. A conserved salt bridge in the G loop of multiple protein kinases is important for catalysis and for in vivo Lyn function. Molecular Cell. 33: 43-52. PMID 19150426 DOI: 10.1016/J.Molcel.2008.12.024 |
0.48 |
|
| 2009 |
Jegla TJ, Zmasek CM, Batalov S, Nayak SK.. Evolution of the human ion channel set. Comb Chem High Throughput Screen.. 12: 2-23. PMID 19149488 DOI: 10.2174/138620709787047957 |
0.301 |
|
| 2008 |
Wu C, Delano DL, Mitro N, Su SV, Janes J, McClurg P, Batalov S, Welch GL, Zhang J, Orth AP, Walker JR, Glynne RJ, Cooke MP, Takahashi JS, Shimomura K, et al. Gene set enrichment in eQTL data identifies novel annotations and pathway regulators. Plos Genetics. 4: e1000070. PMID 18464898 DOI: 10.1371/Journal.Pgen.1000070 |
0.579 |
|
| 2008 |
Rines DR, Gomez-Ferreria MA, Zhou Y, DeJesus P, Grob S, Batalov S, Labow M, Huesken D, Mickanin C, Hall J, Reinhardt M, Natt F, Lange J, Sharp DJ, Chanda SK, et al. Whole genome functional analysis identifies novel components required for mitotic spindle integrity in human cells. Genome Biology. 9: R44. PMID 18302737 DOI: 10.1186/Gb-2008-9-2-R44 |
0.304 |
|
| 2007 |
McClurg P, Janes J, Wu C, Delano DL, Walker JR, Batalov S, Takahashi JS, Shimomura K, Kohsaka A, Bass J, Wiltshire T, Su AI. Genomewide association analysis in diverse inbred mice: power and population structure. Genetics. 176: 675-83. PMID 17409088 DOI: 10.1534/Genetics.106.066241 |
0.502 |
|
| 2006 |
Mukherji M, Bell R, Supekova L, Wang Y, Orth AP, Batalov S, Miraglia L, Huesken D, Lange J, Martin C, Sahasrabudhe S, Reinhardt M, Natt F, Hall J, Mickanin C, et al. Genome-wide functional analysis of human cell-cycle regulators. Proceedings of the National Academy of Sciences of the United States of America. 103: 14819-24. PMID 17001007 DOI: 10.1073/Pnas.0604320103 |
0.455 |
|
| 2005 |
Willingham AT, Orth AP, Batalov S, Peters EC, Wen BG, Aza-Blanc P, Hogenesch JB, Schultz PG. A strategy for probing the function of noncoding RNAs finds a repressor of NFAT. Science (New York, N.Y.). 309: 1570-3. PMID 16141075 DOI: 10.1126/Science.1115901 |
0.411 |
|
| 2005 |
Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N, Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K, Bajic VB, Brenner SE, Batalov S, et al. The transcriptional landscape of the mammalian genome. Science. 309: 1559-63. PMID 16141072 DOI: 10.1126/science.1112014. |
0.333 |
|
| 2004 |
Orth AP, Batalov S, Perrone M, Chanda SK. The promise of genomics to identify novel therapeutic targets. Expert Opinion On Therapeutic Targets. 8: 587-96. PMID 15584864 DOI: 10.1517/14728222.8.6.587 |
0.308 |
|
| 2004 |
Pletcher MT, McClurg P, Batalov S, Su AI, Barnes SW, Lagler E, Korstanje R, Wang X, Nusskern D, Bogue MA, Mural RJ, Paigen B, Wiltshire T. Use of a dense single nucleotide polymorphism map for in silico mapping in the mouse. Plos Biology. 2: e393. PMID 15534693 DOI: 10.1371/Journal.Pbio.0020393 |
0.545 |
|
| 2004 |
Su AI, Wiltshire T, Batalov S, Lapp H, Ching KA, Block D, Zhang J, Soden R, Hayakawa M, Kreiman G, Cooke MP, Walker JR, Hogenesch JB. A gene atlas of the mouse and human protein-encoding transcriptomes. Proceedings of the National Academy of Sciences of the United States of America. 101: 6062-7. PMID 15075390 DOI: 10.1073/Pnas.0400782101 |
0.548 |
|
| 2004 |
Zheng L, Liu J, Batalov S, Zhou D, Orth A, Ding S, Schultz PG. An approach to genomewide screens of expressed small interfering RNAs in mammalian cells. Proceedings of the National Academy of Sciences of the United States of America. 101: 135-40. PMID 14688408 DOI: 10.1073/Pnas.2136685100 |
0.448 |
|
| 2003 |
Gustincich S, Batalov S, Beisel KW, Bono H, Carninci P, Fletcher CF, Grimmond S, Hirokawa N, Jarvis ED, Jegla T, Kawasawa Y, LeMieux J, Miki H, Raviola E, Teasdale RD, et al. Analysis of the mouse transcriptome for genes involved in the function of the nervous system. Genome Research. 13: 1395-401. PMID 12819138 DOI: 10.1101/Gr.1135303 |
0.637 |
|
| 2003 |
Wiltshire T, Pletcher MT, Batalov S, Barnes SW, Tarantino LM, Cooke MP, Wu H, Smylie K, Santrosyan A, Copeland NG, Jenkins NA, Kalush F, Mural RJ, Glynne RJ, Kay SA, et al. Genome-wide single-nucleotide polymorphism analysis defines haplotype patterns in mouse. Proceedings of the National Academy of Sciences of the United States of America. 100: 3380-5. PMID 12612341 DOI: 10.1073/Pnas.0130101100 |
0.546 |
|
| 2002 |
Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K, Tomaru Y, Hasegawa Y, ... ... Batalov S, et al. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 420: 563-73. PMID 12466851 DOI: 10.1038/Nature01266 |
0.437 |
|
| 2002 |
Volkman SK, Hartl DL, Wirth DF, Nielsen KM, Choi M, Batalov S, Zhou Y, Plouffe D, Le Roch KG, Abagyan R, Winzeler EA. Excess polymorphisms in genes for membrane proteins in Plasmodium falciparum. Science (New York, N.Y.). 298: 216-8. PMID 12364807 DOI: 10.1126/Science.1075642 |
0.479 |
|
| 2001 |
Hogenesch JB, Ching KA, Batalov S, Su AI, Walker JR, Zhou Y, Kay SA, Schultz PG, Cooke MP. A comparison of the Celera and Ensembl predicted gene sets reveals little overlap in novel genes. Cell. 106: 413-5. PMID 11534548 DOI: 10.1016/S0092-8674(01)00467-6 |
0.423 |
|
| 2001 |
Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y, Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa K, Izawa M, Nishi K, ... ... Batalov S, et al. Functional annotation of a full-length mouse cDNA collection. Nature. 409: 685-90. PMID 11217851 DOI: 10.1038/35055500 |
0.319 |
|
| 2000 |
Cardozo T, Batalov S, Abagyan R. Estimating local backbone structural deviation in homology models Computers and Chemistry. 24: 13-21. PMID 10642877 DOI: 10.1016/S0097-8485(00)80004-2 |
0.44 |
|
| 1997 |
Abagyan R, Batalov S, Cardozo T, Totrov M, Webber J, Zhou Y. Homology modeling with internal coordinate mechanics: Deformation zone mapping and improvements of models via conformational search Proteins: Structure, Function and Genetics. 29: 29-37. PMID 9485492 DOI: 10.1002/(Sici)1097-0134(1997)1+<29::Aid-Prot5>3.0.Co;2-J |
0.423 |
|
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