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Clara S. Chan, Ph.D. - Publications

Affiliations: 
2006 University of California, Berkeley, Berkeley, CA, United States 
Area:
Mineralogy, environmental geochemistry, geomicrobiology, and nanogeoscience
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46 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Chan CS, Dykes GE, Hoover RL, Limmer MA, Seyfferth AL. Gallionellaceae in rice root plaque: metabolic roles in iron oxidation, nutrient cycling, and plant interactions. Applied and Environmental Microbiology. e0057023. PMID 38009924 DOI: 10.1128/aem.00570-23  0.355
2023 Hoover RL, Keffer JL, Polson SW, Chan CS. Gallionellaceae pangenomic analysis reveals insight into phylogeny, metabolic flexibility, and iron oxidation mechanisms. Msystems. e0003823. PMID 37882557 DOI: 10.1128/msystems.00038-23  0.391
2023 Hoover RL, Keffer JL, Polson SW, Chan CS. Gallionellaceae pangenomic analysis reveals insight into phylogeny, metabolic flexibility, and iron oxidation mechanisms. Biorxiv : the Preprint Server For Biology. PMID 36747706 DOI: 10.1101/2023.01.26.525709  0.399
2023 Cooper RE, Finck J, Chan C, Küsel K. Mixotrophy broadens the ecological niche range of the iron oxidizer Sideroxydans sp. CL21 isolated from an iron-rich peatland. Fems Microbiology Ecology. PMID 36623865 DOI: 10.1093/femsec/fiac156  0.343
2022 Zhou N, Kupper RJ, Catalano JG, Thompson A, Chan CS. Biological Oxidation of Fe(II)-Bearing Smectite by Microaerophilic Iron Oxidizer Using Dual Mto and Cyc2 Iron Oxidation Pathways. Environmental Science & Technology. 56: 17443-17453. PMID 36417801 DOI: 10.1021/acs.est.2c05142  0.361
2021 Zhou N, Keffer JL, Polson SW, Chan CS. Unraveling Fe(II)-oxidizing mechanisms in a facultative Fe(II)-oxidizer, ES-1 via culturing, transcriptomics, and RT-qPCR. Applied and Environmental Microbiology. AEM0159521. PMID 34788064 DOI: 10.1128/AEM.01595-21  0.333
2021 Keffer JL, McAllister SM, Garber AI, Hallahan BJ, Sutherland MC, Rozovsky S, Chan CS. Iron Oxidation by a Fused Cytochrome-Porin Common to Diverse Iron-Oxidizing Bacteria. Mbio. e0107421. PMID 34311573 DOI: 10.1128/mBio.01074-21  0.409
2021 Zhou N, Luther GW, Chan CS. Ligand Effects on Biotic and Abiotic Fe(II) Oxidation by the Microaerophile . Environmental Science & Technology. PMID 34110796 DOI: 10.1021/acs.est.1c00497  0.375
2020 McAllister SM, Vandzura R, Keffer JL, Polson SW, Chan CS. Aerobic and anaerobic iron oxidizers together drive denitrification and carbon cycling at marine iron-rich hydrothermal vents. The Isme Journal. PMID 33328652 DOI: 10.1038/s41396-020-00849-y  0.398
2020 Akob DM, Hallenbeck M, Beulig F, Fabisch M, Küsel K, Keffer JL, Woyke T, Shapiro N, Lapidus A, Klenk HP, Chan CS. Mixotrophic Iron-Oxidizing Isolates from an Acid Mine Drainage-Affected Creek. Applied and Environmental Microbiology. PMID 33008825 DOI: 10.1128/AEM.01424-20  0.383
2020 Garber AI, Nealson KH, Okamoto A, McAllister SM, Chan CS, Barco RA, Merino N. FeGenie: A Comprehensive Tool for the Identification of Iron Genes and Iron Gene Neighborhoods in Genome and Metagenome Assemblies. Frontiers in Microbiology. 11: 37. PMID 32082281 DOI: 10.3389/Fmicb.2020.00037  0.451
2020 McAllister SM, Polson SW, Butterfield DA, Glazer BT, Sylvan JB, Chan CS. Validating the Cyc2 Neutrophilic Iron Oxidation Pathway Using Meta-omics of Iron Mats at Marine Hydrothermal Vents. Msystems. 5. PMID 32071158 DOI: 10.1128/mSystems.00553-19  0.412
2020 Cooper RE, Wegner CE, McAllister SM, Shevchenko O, Chan CS, Küsel K. Draft Genome Sequence of Sideroxydans sp. Strain CL21, an Fe(II)-Oxidizing Bacterium. Microbiology Resource Announcements. 9. PMID 31919186 DOI: 10.1128/MRA.01444-19  0.302
2019 Cron B, Henri P, Chan CS, Macalady JL, Cosmidis J. Elemental Sulfur Formation by Is Mediated by Extracellular Organic Compounds. Frontiers in Microbiology. 10: 2710. PMID 31827465 DOI: 10.3389/Fmicb.2019.02710  0.633
2019 Marnocha CL, Sabanayagam CR, Modla S, Powell DH, Henri PA, Steele AS, Hanson TE, Webb SM, Chan CS. Insights Into the Mineralogy and Surface Chemistry of Extracellular Biogenic S Globules Produced by . Frontiers in Microbiology. 10: 271. PMID 30858832 DOI: 10.3389/Fmicb.2019.00271  0.404
2019 McAllister SM, Moore RM, Gartman A, Luther GW, Emerson D, Chan CS. The Fe(II)-oxidizing Zetaproteobacteria: Historical, ecological, and genomic perspectives. Fems Microbiology Ecology. PMID 30715272 DOI: 10.1093/Femsec/Fiz015  0.464
2018 Beam JP, Scott JJ, McAllister SM, Chan CS, McManus J, Meysman FJR, Emerson D. Biological rejuvenation of iron oxides in bioturbated marine sediments. The Isme Journal. PMID 29343830 DOI: 10.1038/S41396-017-0032-6  0.484
2017 Chiu BK, Kato S, McAllister SM, Field EK, Chan CS. Novel Pelagic Iron-Oxidizing Zetaproteobacteria from the Chesapeake Bay Oxic-Anoxic Transition Zone. Frontiers in Microbiology. 8: 1280. PMID 28769885 DOI: 10.3389/Fmicb.2017.01280  0.463
2017 Percak-Dennett E, He S, Converse B, Konishi H, Xu H, Corcoran A, Noguera D, Chan C, Bhayyacharyya A, Borch T, Boyd E, Roden EE. Microbial acceleration of aerobic pyrite oxidation at circumneutral pH. Geobiology. PMID 28452176 DOI: 10.1111/Gbi.12241  0.485
2016 Field EK, Kato S, Findlay AJ, MacDonald DJ, Chiu BK, Luther GW, Chan CS. Planktonic marine iron oxidizers drive iron mineralization under low-oxygen conditions. Geobiology. PMID 27384464 DOI: 10.1111/Gbi.12189  0.48
2016 Chan CS, McAllister SM, Leavitt AH, Glazer BT, Krepski ST, Emerson D. The Architecture of Iron Microbial Mats Reflects the Adaptation of Chemolithotrophic Iron Oxidation in Freshwater and Marine Environments. Frontiers in Microbiology. 7: 796. PMID 27313567 DOI: 10.3389/Fmicb.2016.00796  0.49
2016 Marnocha CL, Levy AT, Powell DH, Hanson TE, Chan CS. Mechanisms of extracellular S(0) globule production and degradation in Chlorobaculum tepidum via dynamic cell-globule interactions. Microbiology (Reading, England). PMID 27121868 DOI: 10.1099/Mic.0.000294  0.425
2015 Kato S, Ohkuma M, Powell DH, Krepski ST, Oshima K, Hattori M, Shapiro N, Woyke T, Chan CS. Comparative Genomic Insights into Ecophysiology of Neutrophilic, Microaerophilic Iron Oxidizing Bacteria. Frontiers in Microbiology. 6: 1265. PMID 26617599 DOI: 10.3389/Fmicb.2015.01265  0.46
2015 Hanson TE, Bonsu E, Tuerk A, Marnocha CL, Powell DH, Chan CS. Chlorobaculum tepidum growth on biogenic S(0) as the sole photosynthetic electron donor. Environmental Microbiology. PMID 26234460 DOI: 10.1111/1462-2920.12995  0.351
2015 McAllister SM, Barnett JM, Heiss JW, Findlay AJ, MacDonald DJ, Dow CL, Luther GW, Michael HA, Chan CS. Dynamic hydrologic and biogeochemical processes drive microbially enhanced iron and sulfur cycling within the intertidal mixing zone of a beach aquifer Limnology and Oceanography. 60: 329-345. DOI: 10.1002/Lno.10029  0.455
2014 MacDonald DJ, Findlay AJ, McAllister SM, Barnett JM, Hredzak-Showalter P, Krepski ST, Cone SG, Scott J, Bennett SK, Chan CS, Emerson D, Luther Iii GW. Using in situ voltammetry as a tool to identify and characterize habitats of iron-oxidizing bacteria: from fresh water wetlands to hydrothermal vent sites. Environmental Science. Processes & Impacts. 16: 2117-26. PMID 24924809 DOI: 10.1039/C4Em00073K  0.441
2014 Kato S, Krepski S, Chan C, Itoh T, Ohkuma M. Ferriphaselus amnicola gen. nov., sp. nov., a neutrophilic, stalk-forming, iron-oxidizing bacterium isolated from an iron-rich groundwater seep. International Journal of Systematic and Evolutionary Microbiology. 64: 921-5. PMID 24425821 DOI: 10.1099/Ijs.0.058487-0  0.366
2014 Fleming EJ, Cetinić I, Chan CS, Whitney King D, Emerson D. Ecological succession among iron-oxidizing bacteria. The Isme Journal. 8: 804-15. PMID 24225888 DOI: 10.1038/Ismej.2013.197  0.476
2013 Kato S, Chan C, Itoh T, Ohkuma M. Functional gene analysis of freshwater iron-rich flocs at circumneutral pH and isolation of a stalk-forming microaerophilic iron-oxidizing bacterium. Applied and Environmental Microbiology. 79: 5283-90. PMID 23811518 DOI: 10.1128/AEM.03840-12  0.389
2013 Krepski ST, Emerson D, Hredzak-Showalter PL, Luther GW, Chan CS. Morphology of biogenic iron oxides records microbial physiology and environmental conditions: toward interpreting iron microfossils. Geobiology. 11: 457-71. PMID 23790206 DOI: 10.1111/Gbi.12043  0.493
2013 Fleming EJ, Davis RE, McAllister SM, Chan CS, Moyer CL, Tebo BM, Emerson D. Hidden in plain sight: discovery of sheath-forming, iron-oxidizing Zetaproteobacteria at Loihi Seamount, Hawaii, USA. Fems Microbiology Ecology. 85: 116-27. PMID 23480633 DOI: 10.1111/1574-6941.12104  0.453
2013 Saini G, Chan CS. Near-neutral surface charge and hydrophilicity prevent mineral encrustation of Fe-oxidizing micro-organisms. Geobiology. 11: 191-200. PMID 23279435 DOI: 10.1111/Gbi.12021  0.424
2013 Kato S, Chan C, Itoh T, Ohkuma M. Functional gene analysis of freshwater iron-rich flocs at circumneutral ph and isolation of a stalk-forming microaerophilic iron-oxidizing bacterium Applied and Environmental Microbiology. 79: 5283-5290. DOI: 10.1128/Aem.03840-12  0.476
2012 Krepski ST, Hanson TE, Chan CS. Isolation and characterization of a novel biomineral stalk-forming iron-oxidizing bacterium from a circumneutral groundwater seep. Environmental Microbiology. 14: 1671-80. PMID 22151253 DOI: 10.1111/J.1462-2920.2011.02652.X  0.453
2011 Singer E, Emerson D, Webb EA, Barco RA, Kuenen JG, Nelson WC, Chan CS, Comolli LR, Ferriera S, Johnson J, Heidelberg JF, Edwards KJ. Mariprofundus ferrooxydans PV-1 the first genome of a marine Fe(II) oxidizing Zetaproteobacterium. Plos One. 6: e25386. PMID 21966516 DOI: 10.1371/Journal.Pone.0025386  0.435
2011 Comolli LR, Luef B, Chan CS. High-resolution 2D and 3D cryo-TEM reveals structural adaptations of two stalk-forming bacteria to an Fe-oxidizing lifestyle. Environmental Microbiology. 13: 2915-29. PMID 21895918 DOI: 10.1111/J.1462-2920.2011.02567.X  0.511
2011 Edwards KJ, Glazer BT, Rouxel OJ, Bach W, Emerson D, Davis RE, Toner BM, Chan CS, Tebo BM, Staudigel H, Moyer CL. Ultra-diffuse hydrothermal venting supports Fe-oxidizing bacteria and massive umber deposition at 5000 m off Hawaii. The Isme Journal. 5: 1748-58. PMID 21544100 DOI: 10.1038/Ismej.2011.48  0.463
2011 Chan CS, Fakra SC, Emerson D, Fleming EJ, Edwards KJ. Lithotrophic iron-oxidizing bacteria produce organic stalks to control mineral growth: implications for biosignature formation. The Isme Journal. 5: 717-27. PMID 21107443 DOI: 10.1038/Ismej.2010.173  0.513
2011 Yücel M, Gartman A, Chan CS, Luther GW. Hydrothermal vents as a kinetically stable source of iron-sulphide-bearing nanoparticles to the ocean Nature Geoscience. 4: 367-371. DOI: 10.1038/Ngeo1148  0.441
2009 Chan CS, Fakra SC, Edwards DC, Emerson D, Banfield JF. Iron oxyhydroxide mineralization on microbial extracellular polysaccharides Geochimica Et Cosmochimica Acta. 73: 3807-3818. DOI: 10.1016/J.Gca.2009.02.036  0.581
2009 Toner BM, Santelli CM, Marcus MA, Wirth R, Chan CS, McCollom T, Bach W, Edwards KJ. Biogenic iron oxyhydroxide formation at mid-ocean ridge hydrothermal vents: Juan de Fuca Ridge Geochimica Et Cosmochimica Acta. 73: 388-403. DOI: 10.1016/J.Gca.2008.09.035  0.451
2008 Singer SW, Chan CS, Zemla A, VerBerkmoes NC, Hwang M, Hettich RL, Banfield JF, Thelen MP. Characterization of cytochrome 579, an unusual cytochrome isolated from an iron-oxidizing microbial community. Applied and Environmental Microbiology. 74: 4454-62. PMID 18469132 DOI: 10.1128/Aem.02799-07  0.562
2008 Jeans C, Singer SW, Chan CS, Verberkmoes NC, Shah M, Hettich RL, Banfield JF, Thelen MP. Cytochrome 572 is a conspicuous membrane protein with iron oxidation activity purified directly from a natural acidophilic microbial community. The Isme Journal. 2: 542-50. PMID 18463612 DOI: 10.1038/Ismej.2008.17  0.571
2007 Emerson D, Rentz JA, Lilburn TG, Davis RE, Aldrich H, Chan C, Moyer CL. A novel lineage of proteobacteria involved in formation of marine Fe-oxidizing microbial mat communities. Plos One. 2: e667. PMID 17668050 DOI: 10.1371/Journal.Pone.0000667  0.47
2004 Chan CS, De Stasio G, Welch SA, Girasole M, Frazer BH, Nesterova MV, Fakra S, Banfield JF. Microbial polysaccharides template assembly of nanocrystal fibers. Science (New York, N.Y.). 303: 1656-8. PMID 15016997 DOI: 10.1126/Science.1092098  0.53
2001 Banfield JF, Moreau JW, Chan CS, Welch SA, Little B. Mineralogical biosignatures and the search for life on Mars. Astrobiology. 1: 447-65. PMID 12448978 DOI: 10.1089/153110701753593856  0.627
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