Roderick I. Mackie - Publications

Affiliations: 
University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 
Area:
Microbiology Biology

141 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Kim HW, Kim NK, Thompson J, de Jesus M, Rehberger J, Rehberger T, Smith AH, Mackie RI. Effects of dosing non-toxigenic Clostridia on the bacterial populations and immunological responses in the intestinal tract of lactating dairy cows. Frontiers in Microbiology. 14: 1107964. PMID 37415814 DOI: 10.3389/fmicb.2023.1107964  0.535
2020 Hagen LH, Brooke CG, Shaw CA, Norbeck AD, Piao H, Arntzen MØ, Olson HM, Copeland A, Isern N, Shukla A, Roux S, Lombard V, Henrissat B, O'Malley MA, Grigoriev IV, ... ... Mackie RI, et al. Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber. The Isme Journal. PMID 32929206 DOI: 10.1038/S41396-020-00769-X  0.38
2020 Cann I, Pereira GV, Abdel-Hamid AM, Kim H, Wefers D, Kayang BB, Kanai T, Sato T, Bernardi RC, Atomi H, Mackie RI. Thermophilic degradation of hemicellulose, a critical feedstock in the production of bioenergy and other value-added products. Applied and Environmental Microbiology. PMID 31980431 DOI: 10.1128/Aem.02296-19  0.309
2019 Greening C, Geier R, Wang C, Woods LC, Morales SE, McDonald MJ, Rushton-Green R, Morgan XC, Koike S, Leahy SC, Kelly WJ, Cann I, Attwood GT, Cook GM, Mackie RI. Diverse hydrogen production and consumption pathways influence methane production in ruminants. The Isme Journal. PMID 31243332 DOI: 10.1038/S41396-019-0464-2  0.34
2019 Li Y, Li Y, Jin W, Sharpton TJ, Mackie RI, Cann I, Cheng Y, Zhu W. Combined Genomic, Transcriptomic, Proteomic, and Physiological Characterization of the Growth of sp. F1 in Monoculture and Co-culture With a Syntrophic Methanogen. Frontiers in Microbiology. 10: 435. PMID 30894845 DOI: 10.3389/Fmicb.2019.00435  0.306
2019 Oosterkamp MJ, Bauer S, Ibáñez AB, Méndez-García C, Hong PY, Cann I, Mackie RI. Identification of methanogenesis and syntrophy as important microbial metabolic processes for optimal thermophilic anaerobic digestion of energy cane thin stillage Bioresource Technology Reports. 7: 100254. DOI: 10.1016/J.Biteb.2019.100254  0.33
2018 Naas AE, Solden LM, Norbeck AD, Brewer H, Hagen LH, Heggenes IM, McHardy AC, Mackie RI, Paša-Tolić L, Arntzen MØ, Eijsink VGH, Koropatkin NM, Hess M, Wrighton KC, Pope PB. "Candidatus Paraporphyromonas polyenzymogenes" encodes multi-modular cellulases linked to the type IX secretion system. Microbiome. 6: 44. PMID 29490697 DOI: 10.1186/S40168-018-0421-8  0.335
2017 Ferrario C, Alessandri G, Mancabelli L, Gering E, Mangifesta M, Milani C, Lugli GA, Viappiani A, Duranti S, Turroni F, Ossiprandi MC, Hiyashi R, Mackie R, van Sinderen D, Ventura M. Untangling the cecal microbiota of feral chickens by culturomic and metagenomic analyses. Environmental Microbiology. 19: 4771-4783. PMID 28967204 DOI: 10.1111/1462-2920.13943  0.401
2017 Kim JN, Méndez-García C, Geier RR, Iakiviak M, Chang J, Cann I, Mackie RI. Metabolic networks for nitrogen utilization in Prevotella ruminicola 23. Scientific Reports. 7: 7851. PMID 28798330 DOI: 10.1038/S41598-017-08463-3  0.379
2017 Wefers D, Dong J, Abdel-Hamid AM, Müller Paul H, Pereira GV, Han Y, Dodd D, Baskaran R, Mayer B, Mackie RI, Cann I. Enzymatic mechanism for arabinan degradation and transport in the thermophilic bacterium Caldanaerobius polysaccharolyticus. Applied and Environmental Microbiology. PMID 28710263 DOI: 10.1128/Aem.00794-17  0.321
2017 Wefers D, Cavalcante JJV, Schendel RR, Deveryshetty J, Wang K, Wawrzak Z, Mackie RI, Koropatkin NM, Cann I. Biochemical and structural analyses of two cryptic esterases in Bacteroides intestinalis and their synergistic activities with cognate xylanases. Journal of Molecular Biology. PMID 28669823 DOI: 10.1016/J.Jmb.2017.06.017  0.354
2017 Arntzen MØ, Várnai A, Mackie RI, Eijsink VGH, Pope PB. Outer membrane vesicles from Fibrobacter succinogenes S85 contain an array of Carbohydrate-Active Enzymes with versatile polysaccharide-degrading capacity. Environmental Microbiology. PMID 28447389 DOI: 10.1111/1462-2920.13770  0.312
2016 Devendran S, Abdel-Hamid AM, Evans AF, Iakiviak M, Kwon IH, Mackie RI, Cann I. Multiple cellobiohydrolases and cellobiose phosphorylases cooperate in the ruminal bacterium Ruminococcus albus 8 to degrade cellooligosaccharides. Scientific Reports. 6: 35342. PMID 27748409 DOI: 10.1038/Srep35342  0.342
2016 Wang K, Pereira GV, Cavalcante JJ, Zhang M, Mackie R, Cann I. Bacteroides intestinalis DSM 17393, a member of the human colonic microbiome, upregulates multiple endoxylanases during growth on xylan. Scientific Reports. 6: 34360. PMID 27681607 DOI: 10.1038/Srep34360  0.386
2016 Oosterkamp MJ, Méndez-García C, Kim CH, Bauer S, Ibáñez AB, Zimmerman S, Hong PY, Cann IK, Mackie RI. Lignocellulose-derived thin stillage composition and efficient biological treatment with a high-rate hybrid anaerobic bioreactor system. Biotechnology For Biofuels. 9: 120. PMID 27274357 DOI: 10.1186/S13068-016-0532-Z  0.319
2016 Bian G, Ma S, Zhu Z, Su Y, Zoetendal EG, Mackie R, Liu J, Mu C, Huang R, Smidt H, Zhu W. Age, introduction of solid feed and weaning are more important determinants of gut bacterial succession in piglets than breed and nursing mother as revealed by a reciprocal cross-fostering model. Environmental Microbiology. PMID 26940746 DOI: 10.1111/1462-2920.13272  0.333
2015 Amato KR, Leigh SR, Kent A, Mackie RI, Yeoman CJ, Stumpf RM, Wilson BA, Nelson KE, White BA, Garber PA. The gut microbiota appears to compensate for seasonal diet variation in the wild black howler monkey (Alouatta pigra). Microbial Ecology. 69: 434-43. PMID 25524570 DOI: 10.1007/S00248-014-0554-7  0.346
2015 Hong PY, Mao Y, Ortiz-Kofoed S, Shah R, Cann I, Mackie RI. Metagenomic-based study of the phylogenetic and functional gene diversity in galápagos land and marine iguanas. Microbial Ecology. 69: 444-56. PMID 25524569 DOI: 10.1007/S00248-014-0547-6  0.379
2014 Li X, Rui J, Xiong J, Li J, He Z, Zhou J, Yannarell AC, Mackie RI. Functional potential of soil microbial communities in the maize rhizosphere. Plos One. 9: e112609. PMID 25383887 DOI: 10.1371/Journal.Pone.0112609  0.328
2014 Chekan JR, Kwon IH, Agarwal V, Dodd D, Revindran V, Mackie RI, Cann I, Nair SK. Structural and biochemical basis for mannan utilization by Caldanaerobius polysaccharolyticus strain ATCC BAA-17. The Journal of Biological Chemistry. 289: 34965-77. PMID 25342756 DOI: 10.1074/Jbc.M114.579904  0.343
2014 Amato KR, Leigh SR, Kent A, Mackie RI, Yeoman CJ, Stumpf RM, Wilson BA, Nelson KE, White BA, Garber PA. The role of gut microbes in satisfying the nutritional demands of adult and juvenile wild, black howler monkeys (Alouatta pigra). American Journal of Physical Anthropology. 155: 652-64. PMID 25252073 DOI: 10.1002/Ajpa.22621  0.329
2014 Zhang M, Chekan JR, Dodd D, Hong PY, Radlinski L, Revindran V, Nair SK, Mackie RI, Cann I. Xylan utilization in human gut commensal bacteria is orchestrated by unique modular organization of polysaccharide-degrading enzymes. Proceedings of the National Academy of Sciences of the United States of America. 111: E3708-17. PMID 25136124 DOI: 10.1073/Pnas.1406156111  0.379
2014 Piao H, Lachman M, Malfatti S, Sczyrba A, Knierim B, Auer M, Tringe SG, Mackie RI, Yeoman CJ, Hess M. Temporal dynamics of fibrolytic and methanogenic rumen microorganisms during in situ incubation of switchgrass determined by 16S rRNA gene profiling. Frontiers in Microbiology. 5: 307. PMID 25101058 DOI: 10.3389/Fmicb.2014.00307  0.372
2014 Mao Y, Li X, Smyth EM, Yannarell AC, Mackie RI. Enrichment of specific bacterial and eukaryotic microbes in the rhizosphere of switchgrass (Panicum virgatum L.) through root exudates. Environmental Microbiology Reports. 6: 293-306. PMID 24983534 DOI: 10.1111/1758-2229.12152  0.336
2014 Kim JN, Henriksen ED, Cann IK, Mackie RI. Nitrogen utilization and metabolism in Ruminococcus albus 8. Applied and Environmental Microbiology. 80: 3095-102. PMID 24610852 DOI: 10.1128/Aem.00029-14  0.325
2014 Glad T, Barboza P, Mackie RI, Wright AD, Brusetti L, Mathiesen SD, Sundset MA. Dietary supplementation of usnic acid, an antimicrobial compound in lichens, does not affect rumen bacterial diversity or density in reindeer. Current Microbiology. 68: 724-8. PMID 24509720 DOI: 10.1007/S00284-014-0534-7  0.367
2014 Hong PY, Iakiviak M, Dodd D, Zhang M, Mackie RI, Cann I. Two new xylanases with different substrate specificities from the human gut bacterium Bacteroides intestinalis DSM 17393. Applied and Environmental Microbiology. 80: 2084-93. PMID 24463968 DOI: 10.1128/Aem.03176-13  0.314
2014 Kohl KD, Miller AW, Marvin JE, Mackie R, Dearing MD. Herbivorous rodents (Neotoma spp.) harbour abundant and active foregut microbiota. Environmental Microbiology. 16: 2869-78. PMID 24373154 DOI: 10.1111/1462-2920.12376  0.356
2014 Dong Y, Kumar CG, Chia N, Kim PJ, Miller PA, Price ND, Cann IK, Flynn TM, Sanford RA, Krapac IG, Locke RA, Hong PY, Tamaki H, Liu WT, Mackie RI, et al. Halomonas sulfidaeris-dominated microbial community inhabits a 1.8 km-deep subsurface Cambrian Sandstone reservoir. Environmental Microbiology. 16: 1695-708. PMID 24238218 DOI: 10.1111/1462-2920.12325  0.329
2014 Li X, Rui J, Mao Y, Yannarell A, Mackie R. Dynamics of the bacterial community structure in the rhizosphere of a maize cultivar Soil Biology and Biochemistry. 68: 392-401. DOI: 10.1016/J.Soilbio.2013.10.017  0.354
2013 Præsteng KE, Pope PB, Cann IK, Mackie RI, Mathiesen SD, Folkow LP, Eijsink VG, Sundset MA. Probiotic dosing of Ruminococcus flavefaciens affects rumen microbiome structure and function in reindeer. Microbial Ecology. 66: 840-9. PMID 23959114 DOI: 10.1007/S00248-013-0279-Z  0.334
2013 Hong PY, Yannarell AC, Dai Q, Ekizoglu M, Mackie RI. Monitoring the perturbation of soil and groundwater microbial communities due to pig production activities. Applied and Environmental Microbiology. 79: 2620-9. PMID 23396341 DOI: 10.1128/Aem.03760-12  0.311
2013 Mao Y, Yannarell AC, Davis SC, Mackie RI. Impact of different bioenergy crops on N-cycling bacterial and archaeal communities in soil. Environmental Microbiology. 15: 928-42. PMID 22891790 DOI: 10.1111/J.1462-2920.2012.02844.X  0.317
2013 Piao H, Markillie LM, Culley DE, Mackie RI, Hess M. Improved Method for Isolation of Microbial RNA from Biofuel Feedstock for Metatranscriptomics Advances in Microbiology. 3: 101-107. DOI: 10.4236/Aim.2013.31016  0.318
2013 EKİZOĞLU M, KOIKE S, KRAPAC I, SULTAN MN, MACKIE R. Phenotypic and genotypic characterization of antibiotic-resistant soil and manure bacteria adjacent to swine production facilities Turkish Journal of Veterinary and Animal Sciences. 37: 504-511. DOI: 10.3906/Vet-1211-26  0.333
2012 Su X, Schmitz G, Zhang M, Mackie RI, Cann IK. Heterologous gene expression in filamentous fungi. Advances in Applied Microbiology. 81: 1-61. PMID 22958526 DOI: 10.1016/B978-0-12-394382-8.00001-0  0.334
2012 Han Y, Agarwal V, Dodd D, Kim J, Bae B, Mackie RI, Nair SK, Cann IK. Biochemical and structural insights into xylan utilization by the thermophilic bacterium Caldanaerobius polysaccharolyticus. The Journal of Biological Chemistry. 287: 34946-60. PMID 22918832 DOI: 10.1074/Jbc.M112.391532  0.325
2012 Kisiela DI, Chattopadhyay S, Libby SJ, Karlinsey JE, Fang FC, Tchesnokova V, Kramer JJ, Beskhlebnaya V, Samadpour M, Grzymajlo K, Ugorski M, Lankau EW, Mackie RI, Clegg S, Sokurenko EV. Evolution of Salmonella enterica virulence via point mutations in the fimbrial adhesin. Plos Pathogens. 8: e1002733. PMID 22685400 DOI: 10.1371/Journal.Ppat.1002733  0.313
2012 Lankau EW, Cruz Bedon L, Mackie RI. Salmonella strains isolated from Galápagos iguanas show spatial structuring of serovar and genomic diversity. Plos One. 7: e37302. PMID 22615968 DOI: 10.1371/Journal.Pone.0037302  0.334
2012 Hong PY, Li X, Yang X, Shinkai T, Zhang Y, Wang X, Mackie RI. Monitoring airborne biotic contaminants in the indoor environment of pig and poultry confinement buildings. Environmental Microbiology. 14: 1420-31. PMID 22414212 DOI: 10.1111/J.1462-2920.2012.02726.X  0.351
2012 Lankau EW, Hong PY, Mackie RI. Ecological drift and local exposures drive enteric bacterial community differences within species of Galápagos iguanas. Molecular Ecology. 21: 1779-88. PMID 22369350 DOI: 10.1111/J.1365-294X.2012.05502.X  0.336
2012 Wheeler E, Hong PY, Bedon LC, Mackie RI. Carriage of antibiotic-resistant enteric bacteria varies among sites in Galapagos reptiles. Journal of Wildlife Diseases. 48: 56-67. PMID 22247374 DOI: 10.7589/0090-3558-48.1.56  0.32
2012 Kim JN, Cann IK, Mackie RI. Purification, characterization, and expression of multiple glutamine synthetases from Prevotella ruminicola 23. Journal of Bacteriology. 194: 176-84. PMID 22020637 DOI: 10.1128/Jb.05916-11  0.303
2011 Wheeler E, Cann IK, Mackie RI. Genomic fingerprinting and serotyping of Salmonella from Galápagos iguanas demonstrates island differences in strain diversity. Environmental Microbiology Reports. 3: 166-73. PMID 23761248 DOI: 10.1111/J.1758-2229.2010.00203.X  0.344
2011 Hong PY, Croix JA, Greenberg E, Gaskins HR, Mackie RI. Pyrosequencing-based analysis of the mucosal microbiota in healthy individuals reveals ubiquitous bacterial groups and micro-heterogeneity. Plos One. 6: e25042. PMID 21966408 DOI: 10.1371/Journal.Pone.0025042  0.346
2011 Mao Y, Yannarell AC, Mackie RI. Changes in N-transforming archaea and bacteria in soil during the establishment of bioenergy crops. Plos One. 6: e24750. PMID 21935454 DOI: 10.1371/Journal.Pone.0024750  0.336
2011 Præsteng KE, Mackie RI, Cann IK, Mathiesen SD, Sundset MA. Variations in the 16S-23S rRNA internal transcribed spacer of fibrolytic Butyrivibrio isolates from the reindeer rumen. Canadian Journal of Microbiology. 57: 617-21. PMID 21774627 DOI: 10.1139/W11-038  0.306
2011 Kabel MA, Yeoman CJ, Han Y, Dodd D, Abbas CA, de Bont JA, Morrison M, Cann IK, Mackie RI. Biochemical characterization and relative expression levels of multiple carbohydrate esterases of the xylanolytic rumen bacterium Prevotella ruminicola 23 grown on an ester-enriched substrate. Applied and Environmental Microbiology. 77: 5671-81. PMID 21742923 DOI: 10.1128/Aem.05321-11  0.329
2011 Grønvold AM, Mao Y, L'Abée-Lund TM, Sørum H, Sivertsen T, Yannarell AC, Mackie RI. Fecal microbiota of calves in the clinical setting: effect of penicillin treatment. Veterinary Microbiology. 153: 354-60. PMID 21705160 DOI: 10.1016/J.Vetmic.2011.05.040  0.339
2011 Moon YH, Iakiviak M, Bauer S, Mackie RI, Cann IK. Biochemical analyses of multiple endoxylanases from the rumen bacterium Ruminococcus albus 8 and their synergistic activities with accessory hemicellulose-degrading enzymes. Applied and Environmental Microbiology. 77: 5157-69. PMID 21666020 DOI: 10.1128/Aem.00353-11  0.325
2011 Nakamura N, Amato KR, Garber P, Estrada A, Mackie RI, Gaskins HR. Analysis of the hydrogenotrophic microbiota of wild and captive black howler monkeys (Alouatta pigra) in palenque national park, Mexico. American Journal of Primatology. 73: 909-19. PMID 21557284 DOI: 10.1002/Ajp.20961  0.379
2011 Hong PY, Wheeler E, Cann IK, Mackie RI. Phylogenetic analysis of the fecal microbial community in herbivorous land and marine iguanas of the Galápagos Islands using 16S rRNA-based pyrosequencing. The Isme Journal. 5: 1461-70. PMID 21451584 DOI: 10.1038/Ismej.2011.33  0.399
2011 Hess M, Sczyrba A, Egan R, Kim TW, Chokhawala H, Schroth G, Luo S, Clark DS, Chen F, Zhang T, Mackie RI, Pennacchio LA, Tringe SG, Visel A, Woyke T, et al. Metagenomic discovery of biomass-degrading genes and genomes from cow rumen. Science (New York, N.Y.). 331: 463-7. PMID 21273488 DOI: 10.1126/Science.1200387  0.326
2011 Dodd D, Mackie RI, Cann IK. Xylan degradation, a metabolic property shared by rumen and human colonic Bacteroidetes. Molecular Microbiology. 79: 292-304. PMID 21219452 DOI: 10.1111/J.1365-2958.2010.07473.X  0.365
2010 Nakamura N, Lin HC, McSweeney CS, Mackie RI, Gaskins HR. Mechanisms of microbial hydrogen disposal in the human colon and implications for health and disease. Annual Review of Food Science and Technology. 1: 363-95. PMID 22129341 DOI: 10.1146/Annurev.Food.102308.124101  0.351
2010 Dodd D, Moon YH, Swaminathan K, Mackie RI, Cann IK. Transcriptomic analyses of xylan degradation by Prevotella bryantii and insights into energy acquisition by xylanolytic bacteroidetes. The Journal of Biological Chemistry. 285: 30261-73. PMID 20622018 DOI: 10.1074/Jbc.M110.141788  0.346
2010 Purushe J, Fouts DE, Morrison M, White BA, Mackie RI, Coutinho PM, Henrissat B, Nelson KE. Comparative genome analysis of Prevotella ruminicola and Prevotella bryantii: insights into their environmental niche. Microbial Ecology. 60: 721-9. PMID 20585943 DOI: 10.1007/S00248-010-9692-8  0.327
2010 Barboza PS, Bennett A, Lignot JH, Mackie RI, McWhorter TJ, Secor SM, Skovgaard N, Sundset MA, Wang T. Digestive challenges for vertebrate animals: Microbial diversity, cardiorespiratory coupling, and dietary specialization Physiological and Biochemical Zoology. 83: 764-774. PMID 20578844 DOI: 10.1086/650472  0.342
2010 Nelson DM, Cann IK, Altermann E, Mackie RI. Phylogenetic evidence for lateral gene transfer in the intestine of marine iguanas. Plos One. 5: e10785. PMID 20520734 DOI: 10.1371/Journal.Pone.0010785  0.336
2010 Grønvold AM, L'Abée-Lund TM, Strand E, Sørum H, Yannarell AC, Mackie RI. Fecal microbiota of horses in the clinical setting: potential effects of penicillin and general anesthesia. Veterinary Microbiology. 145: 366-72. PMID 20434851 DOI: 10.1016/J.Vetmic.2010.03.023  0.355
2010 Dodd D, Kiyonari S, Mackie RI, Cann IK. Functional diversity of four glycoside hydrolase family 3 enzymes from the rumen bacterium Prevotella bryantii B14. Journal of Bacteriology. 192: 2335-45. PMID 20190048 DOI: 10.1128/Jb.01654-09  0.313
2010 Grønvold AM, L'abée-Lund TM, Sørum H, Skancke E, Yannarell AC, Mackie RI. Changes in fecal microbiota of healthy dogs administered amoxicillin. Fems Microbiology Ecology. 71: 313-26. PMID 20002181 DOI: 10.1111/J.1574-6941.2009.00808.X  0.346
2010 Koike S, Aminov RI, Yannarell AC, Gans HD, Krapac IG, Chee-Sanford JC, Mackie RI. Molecular ecology of macrolide-lincosamide-streptogramin B methylases in waste lagoons and subsurface waters associated with swine production. Microbial Ecology. 59: 487-98. PMID 19924466 DOI: 10.1007/S00248-009-9610-0  0.312
2010 Nicholson MJ, McSweeney CS, Mackie RI, Brookman JL, Theodorou MK. Diversity of anaerobic gut fungal populations analysed using ribosomal ITS1 sequences in faeces of wild and domesticated herbivores. Anaerobe. 16: 66-73. PMID 19465140 DOI: 10.1016/J.Anaerobe.2009.05.003  0.342
2010 Cann I, Dodd D, Kiyonari S, Moon YH, Schroeder C, Nair S, Mackie R. The Genus Prevotella, A Resource of Enzymes for Hemicellulose Degradation Biophysical Journal. 98: 210a. DOI: 10.1016/J.Bpj.2009.12.1130  0.324
2009 Lamendella R, Santo Domingo JW, Yannarell AC, Ghosh S, Di Giovanni G, Mackie RI, Oerther DB. Evaluation of swine-specific PCR assays used for fecal source tracking and analysis of molecular diversity of swine-specific "bacteroidales" populations. Applied and Environmental Microbiology. 75: 5787-96. PMID 19633126 DOI: 10.1128/Aem.00448-09  0.311
2009 Nakamura N, Leigh SR, Mackie RI, Gaskins HR. Microbial community analysis of rectal methanogens and sulfate reducing bacteria in two non-human primate species. Journal of Medical Primatology. 38: 360-70. PMID 19548980 DOI: 10.1111/J.1600-0684.2009.00361.X  0.351
2009 Chee-Sanford JC, Mackie RI, Koike S, Krapac IG, Lin YF, Yannarell AC, Maxwell S, Aminov RI. Fate and transport of antibiotic residues and antibiotic resistance genes following land application of manure waste. Journal of Environmental Quality. 38: 1086-108. PMID 19398507 DOI: 10.2134/Jeq2008.0128  0.331
2009 Dodd D, Kocherginskaya SA, Spies MA, Beery KE, Abbas CA, Mackie RI, Cann IK. Biochemical analysis of a beta-D-xylosidase and a bifunctional xylanase-ferulic acid esterase from a xylanolytic gene cluster in Prevotella ruminicola 23. Journal of Bacteriology. 191: 3328-38. PMID 19304844 DOI: 10.1128/Jb.01628-08  0.303
2009 Nakamura N, Gaskins HR, Collier CT, Nava GM, Rai D, Petschow B, Russell WM, Harris C, Mackie RI, Wampler JL, Walker DC. Molecular ecological analysis of fecal bacterial populations from term infants fed formula supplemented with selected blends of prebiotics. Applied and Environmental Microbiology. 75: 1121-8. PMID 19088307 DOI: 10.1128/Aem.02359-07  0.743
2008 Lee YJ, Mackie RI, Cann IK, Wiegel J. Description of Caldanaerobius fijiensis gen. nov., sp. nov., an inulin-degrading, ethanol-producing, thermophilic bacterium from a Fijian hot spring sediment, and reclassification of Thermoanaerobacterium polysaccharolyticum and Thermoanaerobacterium zeae as Caldanaerobius polysaccharolyticus comb. nov. and Caldanaerobius zeae comb. nov. International Journal of Systematic and Evolutionary Microbiology. 58: 666-70. PMID 18319475 DOI: 10.1099/Ijs.0.65329-0  0.326
2008 Collier CT, Hofacre CL, Payne AM, Anderson DB, Kaiser P, Mackie RI, Gaskins HR. Coccidia-induced mucogenesis promotes the onset of necrotic enteritis by supporting Clostridium perfringens growth. Veterinary Immunology and Immunopathology. 122: 104-15. PMID 18068809 DOI: 10.1016/J.Vetimm.2007.10.014  0.738
2008 Zoetendal EG, Smith AH, Sundset MA, Mackie RI. The BaeSR two-component regulatory system mediates resistance to condensed tannins in Escherichia coli. Applied and Environmental Microbiology. 74: 535-9. PMID 18039828 DOI: 10.1128/Aem.02271-07  0.527
2007 Koike S, Krapac IG, Oliver HD, Yannarell AC, Chee-Sanford JC, Aminov RI, Mackie RI. Monitoring and source tracking of tetracycline resistance genes in lagoons and groundwater adjacent to swine production facilities over a 3-year period. Applied and Environmental Microbiology. 73: 4813-23. PMID 17545324 DOI: 10.1128/Aem.00665-07  0.301
2007 Aminov RI, Mackie RI. Evolution and ecology of antibiotic resistance genes. Fems Microbiology Letters. 271: 147-61. PMID 17490428 DOI: 10.1111/J.1574-6968.2007.00757.X  0.33
2007 Sundset MA, Praesteng KE, Cann IK, Mathiesen SD, Mackie RI. Novel rumen bacterial diversity in two geographically separated sub-species of reindeer. Microbial Ecology. 54: 424-38. PMID 17473904 DOI: 10.1007/S00248-007-9254-X  0.395
2006 Mackie RI, Koike S, Krapac I, Chee-Sanford J, Maxwell S, Aminov RI. Tetracycline residues and tetracycline resistance genes in groundwater impacted by swine production facilities. Animal Biotechnology. 17: 157-76. PMID 17127527 DOI: 10.1080/10495390600956953  0.339
2005 Amaya KR, Kocherginskaya SA, Mackie RI, Cann IK. Biochemical and mutational analysis of glutamine synthetase type III from the rumen anaerobe Ruminococcus albus 8. Journal of Bacteriology. 187: 7481-91. PMID 16237031 DOI: 10.1128/Jb.187.21.7481-7491.2005  0.308
2005 Smith AH, Zoetendal E, Mackie RI. Bacterial mechanisms to overcome inhibitory effects of dietary tannins. Microbial Ecology. 50: 197-205. PMID 16222487 DOI: 10.1007/S00248-004-0180-X  0.549
2004 McMahon KD, Zheng D, Stams AJ, Mackie RI, Raskin L. Microbial population dynamics during start-up and overload conditions of anaerobic digesters treating municipal solid waste and sewage sludge. Biotechnology and Bioengineering. 87: 823-34. PMID 15334409 DOI: 10.1002/Bit.20192  0.341
2004 Aminov RI, Chee-Sanford JC, Garrigues N, Mehboob A, Mackie RI. Detection of tetracycline resistance genes by PCR methods. Methods in Molecular Biology (Clifton, N.J.). 268: 3-13. PMID 15156014 DOI: 10.1385/1-59259-766-1:003  0.325
2004 Mackie RI, Rycyk M, Ruemmler RL, Aminov RI, Wikelski M. Biochemical and microbiological evidence for fermentative digestion in free-living land iguanas (Conolophus pallidus) and marine iguanas (Amblyrhynchus cristatus) on the Galápagos archipelago. Physiological and Biochemical Zoology : Pbz. 77: 127-38. PMID 15057723 DOI: 10.1086/383498  0.365
2004 Smith AH, Mackie RI. Effect of condensed tannins on bacterial diversity and metabolic activity in the rat gastrointestinal tract. Applied and Environmental Microbiology. 70: 1104-15. PMID 14766594 DOI: 10.1128/Aem.70.2.1104-1115.2004  0.592
2004 Zoetendal EG, Collier CT, Koike S, Mackie RI, Gaskins HR. Molecular ecological analysis of the gastrointestinal microbiota: a review. The Journal of Nutrition. 134: 465-72. PMID 14747690 DOI: 10.1093/Jn/134.2.465  0.762
2004 Sundset M, Cann I, Mathiesen S, Mackie R. Rumen microbial ecology in reindeer - adaptations to a unique diet Journal of Animal and Feed Sciences. 13: 717-720. DOI: 10.22358/Jafs/74100/2004  0.321
2004 Præsteng K, Mathiesen S, Mackie R, Cann I, Sundset M. Novel rumen bacterial isolates from reindeer (Rangifer tarandus tarandus) Journal of Animal and Feed Sciences. 13: 183-186. DOI: 10.22358/Jafs/73772/2004  0.322
2003 Mackie RI, Aminov RI, Hu W, Klieve AV, Ouwerkerk D, Sundset MA, Kamagata Y. Ecology of uncultivated Oscillospira species in the rumen of cattle, sheep, and reindeer as assessed by microscopy and molecular approaches. Applied and Environmental Microbiology. 69: 6808-15. PMID 14602644 DOI: 10.1128/Aem.69.11.6808-6815.2003  0.344
2003 Yanagita K, Manome A, Meng XY, Hanada S, Kanagawa T, Tsuchida T, Mackie RI, Kamagata Y. Flow cytometric sorting, phylogenetic analysis and in situ detection of Oscillospira guillermondii, a large, morphologically conspicuous but uncultured ruminal bacterium. International Journal of Systematic and Evolutionary Microbiology. 53: 1609-14. PMID 13130057 DOI: 10.1099/Ijs.0.02541-0  0.317
2003 Klieve AV, Hennessy D, Ouwerkerk D, Forster RJ, Mackie RI, Attwood GT. Establishing populations of Megasphaera elsdenii YE 34 and Butyrivibrio fibrisolvens YE 44 in the rumen of cattle fed high grain diets. Journal of Applied Microbiology. 95: 621-30. PMID 12911711 DOI: 10.1046/J.1365-2672.2003.02024.X  0.359
2003 Smith AH, Imlay JA, Mackie RI. Increasing the oxidative stress response allows Escherichia coli to overcome inhibitory effects of condensed tannins. Applied and Environmental Microbiology. 69: 3406-11. PMID 12788743 DOI: 10.1128/Aem.69.6.3406-3411.2003  0.522
2003 Antonopoulos DA, Aminov RI, Duncan PA, White BA, Mackie RI. Characterization of the gene encoding glutamate dehydrogenase ( gdhA) from the ruminal bacterium Ruminococcus flavefaciens FD-1. Archives of Microbiology. 179: 184-90. PMID 12610723 DOI: 10.1007/S00203-002-0513-4  0.332
2003 Odenyo AA, Osuji PO, Reed JD, Smith AH, Mackie RI, McSweeney CS, Hanson J. Acacia angustissima: Its anti-nutrients constituents, toxicity and possible mechanisms to alleviate the toxicity - A short review Agroforestry Systems. 59: 141-147. DOI: 10.1023/A:1026360912944  0.565
2003 Smith AH, Wallig MA, Seigler DS, Odenyo AA, McSweeney CS, Mackie RI. Ameliorating the toxic effects of Acacia angustissima with polyethylene glycol in rats Animal Feed Science and Technology. 106: 165-174. DOI: 10.1016/S0377-8401(03)00009-9  0.528
2002 Simpson JM, Kocherginskaya SA, Aminov RI, Skerlos LT, Bradley TM, Mackie RI, White BA. Comparative microbial diversity in the gastrointestinal tracts of food animal species. Integrative and Comparative Biology. 42: 327-31. PMID 21708725 DOI: 10.1093/Icb/42.2.327  0.596
2002 Mackie RI. Mutualistic fermentative digestion in the gastrointestinal tract: diversity and evolution. Integrative and Comparative Biology. 42: 319-26. PMID 21708724 DOI: 10.1093/Icb/42.2.319  0.381
2002 Nardi JB, Mackie RI, Dawson JO. Could microbial symbionts of arthropod guts contribute significantly to nitrogen fixation in terrestrial ecosystems? Journal of Insect Physiology. 48: 751-763. PMID 12770053 DOI: 10.1016/S0022-1910(02)00105-1  0.356
2002 Deplancke B, Vidal O, Ganessunker D, Donovan SM, Mackie RI, Gaskins HR. Selective growth of mucolytic bacteria including Clostridium perfringens in a neonatal piglet model of total parenteral nutrition. The American Journal of Clinical Nutrition. 76: 1117-25. PMID 12399288 DOI: 10.1093/Ajcn/76.5.1117  0.32
2002 Simpson JM, Martineau B, Jones WE, Ballam JM, Mackie RI. Characterization of fecal bacterial populations in canines: effects of age, breed and dietary fiber. Microbial Ecology. 44: 186-97. PMID 12087428 DOI: 10.1007/S00248-002-0001-Z  0.584
2002 Aminov RI, Chee-Sanford JC, Garrigues N, Teferedegne B, Krapac IJ, White BA, Mackie RI. Development, validation, and application of PCR primers for detection of tetracycline efflux genes of gram-negative bacteria. Applied and Environmental Microbiology. 68: 1786-93. PMID 11916697 DOI: 10.1128/Aem.68.4.1786-1793.2002  0.363
2001 McCracken VJ, Simpson JM, Mackie RI, Gaskins HR. Molecular ecological analysis of dietary and antibiotic-induced alterations of the mouse intestinal microbiota. The Journal of Nutrition. 131: 1862-70. PMID 11385080 DOI: 10.1093/Jn/131.6.1862  0.596
2001 McMahon KD, Stroot PG, Mackie RI, Raskin L. Anaerobic codigestion of municipal solid waste and biosolids under various mixing conditions--II: Microbial population dynamics. Water Research. 35: 1817-27. PMID 11329684 DOI: 10.1016/S0043-1354(00)00438-3  0.338
2001 Cann IKO, Stroot PG, Mackie KR, White BA, Mackie RI. Characterization of two novel saccharolytic, anaerobic thermophiles, Thermoanaerobacterium polysaccharolyticum sp. nov. and Thermoanaerobacterium zeae sp. nov., and emendation of the genus Thermoanaerobacterium International Journal of Systematic and Evolutionary Microbiology. 51: 293-302. PMID 11321073 DOI: 10.1099/00207713-51-2-293  0.333
2001 Chee-Sanford JC, Aminov RI, Krapac IJ, Garrigues-Jeanjean N, Mackie RI. Occurrence and Diversity of Tetracycline Resistance Genes in Lagoons and Groundwater Underlying Two Swine Production Facilities Applied and Environmental Microbiology. 67: 1494-1502. PMID 11282596 DOI: 10.1128/Aem.67.4.1494-1502.2001  0.319
2001 Howard GT, Vicknair J, Mackie RI. Sensitive plate assay for screening and detection of bacterial polyurethanase activity. Letters in Applied Microbiology. 32: 211-214. PMID 11264755 DOI: 10.1046/J.1472-765X.2001.00887.X  0.309
2001 Aminov RI, Garrigues-Jeanjean N, Mackie RI. Molecular ecology of tetracycline resistance: development and validation of primers for detection of tetracycline resistance genes encoding ribosomal protection proteins. Applied and Environmental Microbiology. 67: 22-32. PMID 11133424 DOI: 10.1128/Aem.67.1.22-32.2001  0.332
2001 Smith AH, Odenyo AA, Osuji PO, Wallig MA, Kandil FE, Seigler DS, Mackie RI. Evaluation of toxicity of Acacia angustissima in a rat bioassay Animal Feed Science and Technology. 91: 41-57. DOI: 10.1016/S0377-8401(01)00230-9  0.539
2000 Simpson JM, McCracken VJ, Gaskins HR, Mackie RI. Denaturing gradient gel electrophoresis analysis of 16S ribosomal DNA amplicons to monitor changes in fecal bacterial populations of weaning pigs after introduction of Lactobacillus reuteri strain MM53. Applied and Environmental Microbiology. 66: 4705-14. PMID 11055913 DOI: 10.1128/Aem.66.11.4705-4714.2000  0.581
2000 Deplancke B, Hristova KR, Oakley HA, McCracken VJ, Aminov R, Mackie RI, Gaskins HR. Molecular ecological analysis of the succession and diversity of sulfate-reducing bacteria in the mouse gastrointestinal tract. Applied and Environmental Microbiology. 66: 2166-74. PMID 10788396 DOI: 10.1128/Aem.66.5.2166-2174.2000  0.343
1999 Krause DO, Smith WJ, Ryan FM, Mackie RI, McSweeney CS. Use of 16S-rRNA Based Techniques to Investigate the Ecological Succession of Microbial Populations in the Immature Lamb Rumen: Tracking of a Specific Strain of Inoculated Ruminococcus and Interactions with Other Microbial Populations in Vivo. Microbial Ecology. 38: 365-376. PMID 10758183 DOI: 10.1007/S002489901006  0.344
1999 Griswold KE, White BA, Mackie RI. Proteolytic activities of the starch-fermenting ruminal bacterium, Streptococcus bovis. Current Microbiology. 39: 180-6. PMID 10486052 DOI: 10.1007/S002849900442  0.305
1999 Krause DO, Dalrymple BP, Smith WJ, Mackie RI, McSweeney CS. 16S rDNA sequencing of Ruminococcus albus and Ruminococcus flavefaciens: design of a signature probe and its application in adult sheep. Microbiology (Reading, England). 145: 1797-807. PMID 10439419 DOI: 10.1099/13500872-145-7-1797  0.326
1999 Simpson JM, McCracken VJ, White BA, Gaskins HR, Mackie RI. Application of denaturant gradient gel electrophoresis for the analysis of the porcine gastrointestinal microbiota. Journal of Microbiological Methods. 36: 167-79. PMID 10379803 DOI: 10.1016/S0167-7012(99)00029-9  0.603
1999 Mackie RI, Sghir A, Gaskins HR. Developmental microbial ecology of the neonatal gastrointestinal tract. The American Journal of Clinical Nutrition. 69: 1035S-1045S. PMID 10232646 DOI: 10.1093/Ajcn/69.5.1035S  0.329
1998 Griffin ME, McMahon KD, Mackie RI, Raskin L. Methanogenic population dynamics during start-up of anaerobic digesters treating municipal solid waste and biosolids. Biotechnology and Bioengineering. 57: 342-55. PMID 10099211 DOI: 10.1002/(Sici)1097-0290(19980205)57:3<342::Aid-Bit11>3.0.Co;2-I  0.349
1998 Sghir A, Chow JM, Mackie RI. Continuous culture selection of bifidobacteria and lactobacilli from human faecal samples using fructooligosaccharide as selective substrate. Journal of Applied Microbiology. 85: 769-77. PMID 9812388 DOI: 10.1111/J.1365-2672.1998.00590.X  0.354
1998 Sghir A, Antonopoulos D, Mackie RI. Design and evaluation of a Lactobacillus group-specific ribosomal RNA-targeted hybridization probe and its application to the study of intestinal microecology in pigs. Systematic and Applied Microbiology. 21: 291-6. PMID 9704114 DOI: 10.1016/S0723-2020(98)80036-2  0.357
1997 Krause DO, White BA, Mackie RI. Ribotyping of AdherentLactobacillusfrom Weaning Pigs: a Basis for Probiotic Selection Based on Diet and Gut Compartment Anaerobe. 3: 317-325. PMID 16887607 DOI: 10.1006/Anae.1997.0118  0.307
1997 Doré J, Mackie R. Microbial diversity in gut ecosystems Reproduction Nutrition Development. 37: 15-20. DOI: 10.1051/Rnd:19970705  0.342
1996 Gaskins HR, Mackie RI, May T, Garleb KA. Dietary Fructo-oligosaccharide Modulates Large Intestinal Inflammatory Responses to Clostridium difficile in Antibiotic-compromised Mice Microbial Ecology in Health and Disease. 9: 157-166. DOI: 10.3402/Mehd.V9I4.8365  0.343
1996 Morrison M, Mackie R. Nitrogen metabolism by ruminal microorganisms: current understanding and future perspectives Crop & Pasture Science. 47: 227-246. DOI: 10.1071/Ar9960227  0.348
1995 Krause DO, Easter RA, White BA, Mackie RI. Effect of weaning diet on the ecology of adherent lactobacilli in the gastrointestinal tract of the pig. Journal of Animal Science. 73: 2347-2354. PMID 8567472 DOI: 10.2527/1995.7382347X  0.342
1995 Mackie RI, Bryant MP. Anaerobic digestion of cattle waste at mesophilic and thermophilic temperatures Applied Microbiology and Biotechnology. 43: 346-350. DOI: 10.1007/Bf00172837  0.574
1994 Krause DO, Easter RA, Mackie RI. Fermentation of stachyose and raffinose by hind‐gut bacteria of the weanling pig Letters in Applied Microbiology. 18: 349-352. DOI: 10.1111/J.1472-765X.1994.Tb00887.X  0.388
1993 McSweeny CS, Allison MJ, Mackie RI. Amino acid utilization by the ruminal bacterium Synergistes jonesii strain 78-1. Archives of Microbiology. 159: 131-135. PMID 8439235 DOI: 10.1007/Bf00250272  0.321
1992 Duncan PA, White BA, Mackie RI. Purification and properties of NADP-dependent glutamate dehydrogenase from Ruminococcus flavefaciens FD-1. Applied and Environmental Microbiology. 58: 4032-7. PMID 1335719 DOI: 10.1128/Aem.58.12.4032-4037.1992  0.31
1991 Hsu JT, Fahey GC, Merchen NR, Mackie RI. Effects of defaunation and various nitrogen supplementation regimens on microbial numbers and activity in the rumen of sheep. Journal of Animal Science. 69: 1279-89. PMID 2061256 DOI: 10.2527/1991.6931279X  0.331
1991 Mackie RI, White BA, Bryant MP. Lipid metabolism in anaerobic ecosystems. Critical Reviews in Microbiology. 17: 449-79. PMID 2039587 DOI: 10.3109/10408419109115208  0.584
1991 Cecava MJ, Merchen NR, Berger LL, Mackie RI, Fahey GC. Effects of dietary energy level and protein source on nutrient digestion and ruminal nitrogen metabolism in steers. Journal of Animal Science. 69: 2230-43. PMID 1648555 DOI: 10.2527/1991.6952230X  0.341
1990 Morrison M, Mackie RI, Kistner A. Evidence that Cellulolysis by an Anaerobic Ruminal Fungus Is Catabolite Regulated by Glucose, Cellobiose, and Soluble Starch Applied and Environmental Microbiology. 56: 3227-3229. PMID 16348329 DOI: 10.1128/Aem.56.10.3227-3229.1990  0.302
1990 Morrison M, Mackie RI, Kistner A. 3-phenylpropanoic acid improves the affinity of Ruminococcus albus for cellulose in continuous culture Applied and Environmental Microbiology. 56: 3220-3222. PMID 16348327 DOI: 10.1128/Aem.56.10.3220-3222.1990  0.313
1990 Mackie RI, Bryant MP. Efficiency of bacterial protein synthesis during anaerobic degradation of cattle waste. Applied and Environmental Microbiology. 56: 87-92. PMID 2310188 DOI: 10.1128/Aem.56.1.87-92.1990  0.582
1990 Mackie RI, White BA. Recent Advances in Rumen Microbial Ecology and Metabolism: Potential Impact on Nutrient Output Journal of Dairy Science. 73: 2971-2995. PMID 2178174 DOI: 10.3168/Jds.S0022-0302(90)78986-2  0.375
1990 Wohlt J, Frobish R, Davis C, Bryant M, Mackie R. Thermophilic methane production from dairy cattle waste Biological Wastes. 32: 193-207. DOI: 10.1016/0269-7483(90)90048-W  0.593
1989 Mackie RI, Krecek RC, Els HJ, Niekerk JPV, Kirschner LM, Baecker AAW. Characterization of the microbial community colonizing the anal and vulvar pores of helminths from the hindgut of zebras. Applied and Environmental Microbiology. 55: 1178-1186. PMID 2667460 DOI: 10.1128/Aem.55.5.1178-1186.1989  0.336
1988 Marais JP, Therion JJ, Mackie RI, Kistner A, Dennison C. Effect of nitrate and its reduction products on the growth and activity of the rumen microbial population. British Journal of Nutrition. 59: 301-313. PMID 3358930 DOI: 10.1079/Bjn19880037  0.358
1988 Mackie RI, Wilkins CA. Enumeration of anaerobic bacterial microflora of the equine gastrointestinal tract Applied and Environmental Microbiology. 54: 2155-2160. PMID 3190223 DOI: 10.1128/Aem.54.9.2155-2160.1988  0.353
1986 Meyer JHF, Mackie RI. Microbiological evaluation of the intraruminal in sacculus digestion technique. Applied and Environmental Microbiology. 51: 622-629. PMID 3963812 DOI: 10.1128/Aem.51.3.622-629.1986  0.35
1981 Mackie RI, Bryant MP. Metabolic Activity of Fatty Acid-Oxidizing Bacteria and the Contribution of Acetate, Propionate, Butyrate, and CO(2) to Methanogenesis in Cattle Waste at 40 and 60 degrees C. Applied and Environmental Microbiology. 41: 1363-73. PMID 16345789 DOI: 10.1128/Aem.41.6.1363-1373.1981  0.61
1981 McInerney MJ, Mackie RI, Bryant MP. Syntrophic association of a butyrate-degrading bacterium and Methanosarcina enriched from bovine rumen fluid Applied and Environmental Microbiology. 41: 826-828. PMID 7224635 DOI: 10.1128/Aem.41.3.826-828.1981  0.692
1979 Mackie RI, Gilchrist FMC. Changes in Lactate-Producing and Lactate-Utilizing Bacteria in Relation to pH in the Rumen of Sheep During Stepwise Adaptation to a High-Concentrate Diet. Applied and Environmental Microbiology. 38: 422-430. PMID 16345431 DOI: 10.1128/Aem.38.3.422-430.1979  0.355
1979 Mackie RI, Heath S. Enumeration and Isolation of Lactate-Utilizing Bacteria from the Rumen of Sheep Applied and Environmental Microbiology. 38: 416-421. PMID 16345430 DOI: 10.1128/Aem.38.3.416-421.1979  0.373
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