Stuart E. Jones, Ph.D. - Publications

Affiliations: 
2008 University of Wisconsin, Madison, Madison, WI 
Area:
Limnology Biology, Microbiology Biology, Ecology Biology

74 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Shoemaker WR, Jones SE, Muscarella ME, Behringer MG, Lehmkuhl BK, Lennon JT. Microbial population dynamics and evolutionary outcomes under extreme energy limitation. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34385301 DOI: 10.1073/pnas.2101691118  0.751
2020 Olson CR, Solomon CT, Jones SE. Shifting limitation of primary production: experimental support for a new model in lake ecosystems. Ecology Letters. PMID 32945617 DOI: 10.1111/Ele.13606  0.423
2020 Trentman MT, Tank JL, Jones SE, McMillan SK, Royer TV. Seasonal evaluation of biotic and abiotic factors suggests phosphorus retention in constructed floodplains in three agricultural streams. The Science of the Total Environment. 729: 138744. PMID 32498158 DOI: 10.1016/J.Scitotenv.2020.138744  0.328
2020 Locey KJ, Muscarella ME, Larsen ML, Bray SR, Jones SE, Lennon JT. Dormancy dampens the microbial distance-decay relationship. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 375: 20190243. PMID 32200741 DOI: 10.1098/Rstb.2019.0243  0.796
2020 Dassow CJ, Ross AJ, Jensen OP, Sass GG, van Poorten BT, Solomon CT, Jones SE. Experimental demonstration of catch hyperstability from habitat aggregation, not effort sorting, in a recreational fishery Canadian Journal of Fisheries and Aquatic Sciences. 77: 762-769. DOI: 10.1139/Cjfas-2019-0245  0.345
2020 Bertolet BL, Olson CR, Szydlowski DK, Solomon CT, Jones SE. Methane and Primary Productivity in Lakes: Divergence of Temporal and Spatial Relationships Journal of Geophysical Research. 125. DOI: 10.1029/2020Jg005864  0.319
2019 Armitage DW, Jones SE. How sample heterogeneity can obscure the signal of microbial interactions. The Isme Journal. PMID 31249391 DOI: 10.1038/S41396-019-0463-3  0.453
2019 Armitage DW, Jones SE. Negative frequency-dependent growth underlies the stable coexistence of two cosmopolitan aquatic plants. Ecology. e02657. PMID 30770565 DOI: 10.1002/Ecy.2657  0.344
2019 Ziegler JP, Dassow CJ, Jones SE, Ross AJ, Solomon CT. Coarse woody habitat does not predict largemouth bass young of year mortality during the open-water season Canadian Journal of Fisheries and Aquatic Sciences. 76: 998-1005. DOI: 10.1139/Cjfas-2018-0050  0.308
2019 Zwart JA, Hanson ZJ, Read JS, Fienen MN, Hamlet AF, Bolster D, Jones SE. Cross‐Scale Interactions Dictate Regional Lake Carbon Flux and Productivity Response to Future Climate Geophysical Research Letters. 46: 8840-8851. DOI: 10.1029/2019Gl083478  0.74
2019 Zwart JA, Hararuk O, Prairie YT, Jones SE, Solomon CT. Improving estimates and forecasts of lake carbon dynamics using data assimilation Limnology and Oceanography: Methods. 17: 97-111. DOI: 10.1002/Lom3.10302  0.724
2019 Bertolet BL, West WE, Armitage DW, Jones SE. Organic matter supply and bacterial community composition predict methanogenesis rates in temperate lake sediments Limnology and Oceanography. 4: 164-172. DOI: 10.1002/Lol2.10114  0.444
2018 Hall EK, Bernhardt ES, Bier RL, Bradford MA, Boot CM, Cotner JB, Del Giorgio PA, Evans SE, Graham EB, Jones SE, Lennon JT, Locey KJ, Nemergut D, Osborne BB, Rocca JD, et al. Understanding how microbiomes influence the systems they inhabit. Nature Microbiology. 3: 977-982. PMID 30143799 DOI: 10.1038/S41564-018-0201-Z  0.796
2018 Ryan SF, Deines JM, Scriber JM, Pfrender ME, Jones SE, Emrich SJ, Hellmann JJ. Climate-mediated hybrid zone movement revealed with genomics, museum collection, and simulation modeling. Proceedings of the National Academy of Sciences of the United States of America. PMID 29463695 DOI: 10.1073/Pnas.1714950115  0.354
2018 Koizumi S, Craig N, Zwart JA, Kelly PT, Ziegler JP, Weidel BC, Jones SE, Solomon CT. Experimental whole-lake dissolved organic carbon increase alters fish diet and density but not growth or productivity Canadian Journal of Fisheries and Aquatic Sciences. 75: 1859-1867. DOI: 10.1139/Cjfas-2017-0283  0.748
2018 Hanson ZJ, Zwart JA, Vanderwall J, Solomon CT, Jones SE, Hamlet AF, Bolster D. Integrated, Regional-Scale Hydrologic Modeling of Inland Lakes Jawra Journal of the American Water Resources Association. 54: 1302-1324. DOI: 10.1111/1752-1688.12688  0.71
2018 Vizza C, Pechal JL, Benbow ME, Lang JM, Chaloner DT, Jones SE, Lamberti GA. Nitrate amendment reduces biofilm biomass and shifts microbial communities in remote, oligotrophic ponds Freshwater Science. 37: 251-263. DOI: 10.1086/697897  0.468
2018 Hart JA, Vizza C, West WE, Chaloner DT, Jones SE, Lamberti GA. Methane Cycling Contributes to Distinct Patterns in Carbon Stable Isotopes of Wetland Detritus Wetlands. 39: 361-370. DOI: 10.1007/S13157-018-1119-1  0.326
2018 Kelly PT, Solomon CT, Zwart JA, Jones SE. A Framework for Understanding Variation in Pelagic Gross Primary Production of Lake Ecosystems Ecosystems. 21: 1364-1376. DOI: 10.1007/S10021-018-0226-4  0.763
2018 Maranger R, Jones SE, Cotner JB. Stoichiometry of carbon, nitrogen, and phosphorus through the freshwater pipe Limnology and Oceanography Letters. 3: 89-101. DOI: 10.1002/Lol2.10080  0.33
2018 Hararuk O, Zwart JA, Jones SE, Prairie Y, Solomon CT. Model-Data Fusion to Test Hypothesized Drivers of Lake Carbon Cycling Reveals Importance of Physical Controls Journal of Geophysical Research: Biogeosciences. 123: 1130-1142. DOI: 10.1002/2017Jg004084  0.725
2018 Zwart JA, Hanson ZJ, Vanderwall J, Bolster D, Hamlet A, Jones SE. Spatially Explicit, Regional-Scale Simulation of Lake Carbon Fluxes Global Biogeochemical Cycles. 32: 1276-1293. DOI: 10.1002/2017Gb005843  0.727
2017 Craig N, Jones SE, Weidel BC, Solomon CT. Life history constraints explain negative relationship between fish productivity and dissolved organic carbon in lakes. Ecology and Evolution. 7: 6201-6209. PMID 28861225 DOI: 10.1002/Ece3.3108  0.389
2017 Tanentzap AJ, Kielstra BW, Wilkinson GM, Berggren M, Craig N, Del Giorgio PA, Grey J, Gunn JM, Jones SE, Karlsson J, Solomon CT, Pace ML. Terrestrial support of lake food webs: Synthesis reveals controls over cross-ecosystem resource use. Science Advances. 3: e1601765. PMID 28345035 DOI: 10.1126/Sciadv.1601765  0.416
2017 Vizza C, West WE, Jones SE, Hart JA, Lamberti GA. Regulators of coastal wetland methane production and responses to simulated global change Biogeosciences. 14: 431-446. DOI: 10.5194/Bg-14-431-2017  0.343
2017 Weidel BC, Baglini K, Jones SE, Kelly PT, Solomon CT, Zwart JA. Light climate and dissolved organic carbon concentration influence species-specific changes in fish zooplanktivory Inland Waters. 7: 210-217. DOI: 10.1080/20442041.2017.1329121  0.754
2017 Kelly PT, Weidel BC, Paufve MR, O’Malley BP, Watkins JM, Rudstam LG, Jones SE. Concentration and biochemical gradients of seston in Lake Ontario Journal of Great Lakes Research. 43: 795-803. DOI: 10.1016/J.Jglr.2017.03.007  0.403
2017 Jones SE, Zwart JA, Kelly PT, Solomon CT. Hydrologic setting constrains lake heterotrophy and terrestrial carbon fate Limnology and Oceanography Letters. 3: 256-264. DOI: 10.1002/Lol2.10054  0.737
2017 Vizza C, Zwart JA, Jones SE, Tiegs SD, Lamberti GA. Landscape patterns shape wetland pond ecosystem function from glacial headwaters to ocean Limnology and Oceanography. 62: S207-S221. DOI: 10.1002/Lno.10575  0.772
2016 Muscarella ME, Jones SE, Lennon JT. Species sorting along a subsidy gradient alters bacterial community stability. Ecology. 97: 2034-2043. PMID 27859189 DOI: 10.1890/15-2026.1  0.82
2016 Kelly PT, Craig N, Solomon CT, Weidel BC, Zwart JA, Jones SE. Experimental whole-lake increase of dissolved organic carbon concentration produces unexpected increase in crustacean zooplankton density. Global Change Biology. PMID 26919470 DOI: 10.1111/Gcb.13260  0.759
2016 Muscarella ME, Jones SE, Lennon JT. Species sorting along a subsidy gradient alters bacterial community stability Ecology. 97: 2034-2043. DOI: 10.1890/15-2026.1  0.822
2016 Zwart JA, Sebestyen SD, Solomon CT, Jones SE. The Influence of Hydrologic Residence Time on Lake Carbon Cycling Dynamics Following Extreme Precipitation Events Ecosystems. 20: 1000-1014. DOI: 10.1007/S10021-016-0088-6  0.743
2016 Zwart JA, Craig N, Kelly PT, Sebestyen SD, Solomon CT, Weidel BC, Jones SE. Metabolic and physiochemical responses to a whole-lake experimental increase in dissolved organic carbon in a north-temperate lake Limnology and Oceanography. 61: 723-734. DOI: 10.1002/Lno.10248  0.773
2016 West WE, Creamer KP, Jones SE. Productivity and depth regulate lake contributions to atmospheric methane Limnology and Oceanography. 61. DOI: 10.1002/Lno.10247  0.377
2015 Martiny JB, Jones SE, Lennon JT, Martiny AC. Microbiomes in light of traits: A phylogenetic perspective. Science (New York, N.Y.). 350: aac9323. PMID 26542581 DOI: 10.1126/Science.Aac9323  0.77
2015 Zwart JA, Solomon CT, Jones SE. Phytoplankton traits predict ecosystem function in a global set of lakes. Ecology. 96: 2257-64. PMID 26405750 DOI: 10.1890/14-2102.1  0.759
2015 Leff JW, Jones SE, Prober SM, Barberán A, Borer ET, Firn JL, Harpole WS, Hobbie SE, Hofmockel KS, Knops JM, McCulley RL, La Pierre K, Risch AC, Seabloom EW, Schütz M, et al. Consistent responses of soil microbial communities to elevated nutrient inputs in grasslands across the globe. Proceedings of the National Academy of Sciences of the United States of America. 112: 10967-72. PMID 26283343 DOI: 10.1073/Pnas.1508382112  0.458
2015 Docherty KM, Aiello SW, Buehler BK, Jones SE, Szymczyna BR, Walker KA. Ionic liquid biodegradability depends on specific wastewater microbial consortia. Chemosphere. 136: 160-6. PMID 25985304 DOI: 10.1016/J.Chemosphere.2015.05.016  0.4
2015 Livermore JA, Jones SE. Local-global overlap in diversity informs mechanisms of bacterial biogeography. The Isme Journal. PMID 25848869 DOI: 10.1038/Ismej.2015.51  0.47
2015 Aanderud ZT, Jones SE, Fierer N, Lennon JT. Resuscitation of the rare biosphere contributes to pulses of ecosystem activity. Frontiers in Microbiology. 6: 24. PMID 25688238 DOI: 10.3389/Fmicb.2015.00024  0.688
2015 Jones SE, Lennon JT. A test of the subsidy-stability hypothesis: The effects of terrestrial carbon in aquatic ecosystems Ecology. 96: 1550-1560. DOI: 10.1890/14-1783.1  0.679
2015 West WE, McCarthy SM, Jones SE. Phytoplankton lipid content influences freshwater lake methanogenesis Freshwater Biology. 60: 2261-2269. DOI: 10.1111/Fwb.12652  0.344
2015 Solomon CT, Jones SE, Weidel BC, Buffam I, Fork ML, Karlsson J, Larsen S, Lennon JT, Read JS, Sadro S, Saros JE. Ecosystem Consequences of Changing Inputs of Terrestrial Dissolved Organic Matter to Lakes: Current Knowledge and Future Challenges Ecosystems. DOI: 10.1007/S10021-015-9848-Y  0.664
2015 Craig N, Jones SE, Weidel BC, Solomon CT. Habitat, not resource availability, limits consumer production in lake ecosystems Limnology and Oceanography. 60: 2079-2089. DOI: 10.1002/Lno.10153  0.403
2014 Shade A, Jones SE, Caporaso JG, Handelsman J, Knight R, Fierer N, Gilbert JA. Conditionally rare taxa disproportionately contribute to temporal changes in microbial diversity. Mbio. 5: e01371-14. PMID 25028427 DOI: 10.1128/Mbio.01371-14  0.721
2014 Kelly PT, Solomon CT, Weidel BC, Jones SE. Terrestrial carbon is a resource, but not a subsidy, for lake zooplankton. Ecology. 95: 1236-42. PMID 25000755 DOI: 10.1890/13-1586.1  0.375
2014 Livermore JA, Emrich SJ, Tan J, Jones SE. Freshwater bacterial lifestyles inferred from comparative genomics. Environmental Microbiology. 16: 746-58. PMID 23889754 DOI: 10.1111/1462-2920.12199  0.314
2014 Godwin SC, Jones SE, Weidel BC, Solomon CT. Dissolved organic carbon concentration controls benthic primary production: Results from in situ chambers in north-temperate lakes Limnology and Oceanography. 59: 2112-2120. DOI: 10.4319/Lo.2014.59.6.2112  0.405
2013 Lennon JT, Hamilton SK, Muscarella ME, Grandy AS, Wickings K, Jones SE. A source of terrestrial organic carbon to investigate the browning of aquatic ecosystems. Plos One. 8: e75771. PMID 24124511 DOI: 10.1371/Journal.Pone.0075771  0.803
2013 Zhang W, Zeng E, Emrich SJ, Livermore J, Liu D, Jones SE. Predicting bacterial functional traits from whole genome sequences using random forest 2013 Ieee 3rd International Conference On Computational Advances in Bio and Medical Sciences, Iccabs 2013. DOI: 10.1109/ICCABS.2013.6629212  0.361
2013 Aanderud ZT, Jones SE, Schoolmaster DR, Fierer N, Lennon JT. Sensitivity of soil respiration and microbial communities to altered snowfall Soil Biology and Biochemistry. 57: 217-227. DOI: 10.1016/J.Soilbio.2012.07.022  0.637
2012 Jones SE, Cadkin TA, Newton RJ, McMahon KD. Spatial and temporal scales of aquatic bacterial beta diversity. Frontiers in Microbiology. 3: 318. PMID 22969757 DOI: 10.3389/Fmicb.2012.00318  0.756
2012 Burgin A, Hamilton S, Jones S, Lennon J. Denitrification by sulfur-oxidizing bacteria in a eutrophic lake Aquatic Microbial Ecology. 66: 283-293. DOI: 10.3354/Ame01574  0.623
2012 Jones SE, Solomon CT, Weidel BC. Subsidy or Subtraction: How Do Terrestrial Inputs Influence Consumer Production in Lakes? Freshwater Reviews. 5: 37. DOI: 10.1608/Frj-5.1.475  0.421
2012 West WE, Coloso JJ, Jones SE. Effects of algal and terrestrial carbon on methane production rates and methanogen community structure in a temperate lake sediment Freshwater Biology. 57: 949-955. DOI: 10.1111/J.1365-2427.2012.02755.X  0.425
2012 Jennings E, Jones S, Arvola L, Staehr PA, Gaiser E, Jones ID, Weathers KC, Weyhenmeyer GA, Chiu CY, De Eyto E. Effects of weather-related episodic events in lakes: an analysis based on high-frequency data Freshwater Biology. 57: 589-601. DOI: 10.1111/J.1365-2427.2011.02729.X  0.408
2011 Newton RJ, Jones SE, Eiler A, McMahon KD, Bertilsson S. A guide to the natural history of freshwater lake bacteria. Microbiology and Molecular Biology Reviews : Mmbr. 75: 14-49. PMID 21372319 DOI: 10.1128/Mmbr.00028-10  0.732
2011 Lennon JT, Jones SE. Microbial seed banks: the ecological and evolutionary implications of dormancy. Nature Reviews. Microbiology. 9: 119-30. PMID 21233850 DOI: 10.1038/Nrmicro2504  0.64
2010 Jones SE, Lennon JT. Dormancy contributes to the maintenance of microbial diversity. Proceedings of the National Academy of Sciences of the United States of America. 107: 5881-6. PMID 20231463 DOI: 10.1073/Pnas.0912765107  0.715
2010 Jones SE, Lennon JT. Evidence for limited microbial transfer of methane in a planktonic food web Aquatic Microbial Ecology. 58: 45-53. DOI: 10.3354/Ame01349  0.66
2010 Ball BA, Kominoski JS, Adams HE, Jones SE, Kane ES, Loecke TD, Mahaney WM, Martina JP, Prather CM, Robinson TMP, Solomon CT. Direct and terrestrial vegetation-mediated effects of environmental change on aquatic ecosystem processes Bioscience. 60: 590-601. DOI: 10.1525/Bio.2010.60.8.5  0.471
2009 Jones SE, Newton RJ, McMahon KD. Evidence for structuring of bacterial community composition by organic carbon source in temperate lakes. Environmental Microbiology. 11: 2463-72. PMID 19558514 DOI: 10.1111/J.1462-2920.2009.01977.X  0.751
2009 Jones SE, McMahon KD. Species-sorting may explain an apparent minimal effect of immigration on freshwater bacterial community dynamics. Environmental Microbiology. 11: 905-13. PMID 19040451 DOI: 10.1111/J.1462-2920.2008.01814.X  0.676
2009 JONES SE, KRATZ TK, CHIU C, McMAHON KD. Influence of typhoons on annual CO2flux from a subtropical, humic lake Global Change Biology. 15: 243-254. DOI: 10.1111/J.1365-2486.2008.01723.X  0.622
2008 Jones SE, Newton RJ, McMahon KD. Potential for atmospheric deposition of bacteria to influence bacterioplankton communities. Fems Microbiology Ecology. 64: 388-94. PMID 18393990 DOI: 10.1111/J.1574-6941.2008.00476.X  0.75
2008 Shade A, Jones SE, McMahon KD. The influence of habitat heterogeneity on freshwater bacterial community composition and dynamics. Environmental Microbiology. 10: 1057-67. PMID 18218031 DOI: 10.1111/J.1462-2920.2007.01527.X  0.789
2008 Jones SE, Chiu C, Kratz TK, Wu J, Shade A, McMahon KD. Typhoons initiate predictable change in aquatic bacterial communities Limnology and Oceanography. 53: 1319-1326. DOI: 10.4319/Lo.2008.53.4.1319  0.78
2007 Newton RJ, Jones SE, Helmus MR, McMahon KD. Phylogenetic ecology of the freshwater Actinobacteria acI lineage. Applied and Environmental Microbiology. 73: 7169-76. PMID 17827330 DOI: 10.1128/Aem.00794-07  0.749
2007 Jones SE, Shade AL, McMahon KD, Kent AD. Comparison of primer sets for use in automated ribosomal intergenic spacer analysis of aquatic bacterial communities: an ecological perspective. Applied and Environmental Microbiology. 73: 659-62. PMID 17122397 DOI: 10.1128/Aem.02130-06  0.757
2007 Shade A, Kent AD, Jones SE, Newton RJ, Triplett EW, McMahon KD. Interannual dynamics and phenology of bacterial communities in a eutrophic lake Limnology and Oceanography. 52: 487-494. DOI: 10.4319/Lo.2007.52.2.0487  0.812
2006 Kent AD, Jones SE, Lauster GH, Graham JM, Newton RJ, McMahon KD. Experimental manipulations of microbial food web interactions in a humic lake: shifting biological drivers of bacterial community structure. Environmental Microbiology. 8: 1448-59. PMID 16872407 DOI: 10.1111/J.1462-2920.2006.01039.X  0.765
2006 Balser TC, McMahon KD, Bart D, Bronson D, Coyle DR, Craig N, Flores-Mangual ML, Forshay K, Jones SE, Kent AE, Shade AL. Bridging the gap between micro - and macro-scale perspectives on the role of microbial communities in global change ecology Plant and Soil. 289: 59-70. DOI: 10.1007/S11104-006-9104-5  0.772
2004 Kent AD, Jones SE, Yannarell AC, Graham JM, Lauster GH, Kratz TK, Triplett EW. Annual patterns in bacterioplankton community variability in a humic lake. Microbial Ecology. 48: 550-60. PMID 15696388 DOI: 10.1007/S00248-004-0244-Y  0.492
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