Feng Chen - Publications

Affiliations: 
2008 University of Pennsylvania, Philadelphia, PA, United States 

95 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Chen F, Su L, Hu S, Xue JY, Liu H, Liu G, Jiang Y, Du J, Qiao Y, Fan Y, Liu H, Yang Q, Lu W, Shao ZQ, Zhang J, ... Chen F, et al. A chromosome-level genome assembly of rugged rose (Rosa rugosa) provides insights into its evolution, ecology, and floral characteristics. Horticulture Research. 8: 141. PMID 34145222 DOI: 10.1038/s41438-021-00594-z  0.362
2021 Fucich D, Xu Y, Sosa A, Zhang R, Jiao N, Chen F. Complete Genome Sequence of Chesapeake Bay Winter sp. Strain CBW1107, a Member of Subalpine Cluster II. Microbiology Resource Announcements. 10. PMID 33602734 DOI: 10.1128/MRA.01399-20  0.306
2020 Tan C, Wang Z, Lei X, Lu J, Yan Z, Qin J, Chen F, Xie Q, Lin W. Epidemiology, molecular characterization, and recombination analysis of chicken anemia virus in Guangdong province, China. Archives of Virology. PMID 32318833 DOI: 10.1007/s00705-020-04604-8  0.363
2015 Tremblay J, Singh K, Fern A, Kirton ES, He S, Woyke T, Lee J, Chen F, Dangl JL, Tringe SG. Primer and platform effects on 16S rRNA tag sequencing. Frontiers in Microbiology. 6: 771. PMID 26300854 DOI: 10.3389/Fmicb.2015.00771  0.381
2015 Gordon SP, Tseng E, Salamov A, Zhang J, Meng X, Zhao Z, Kang D, Underwood J, Grigoriev IV, Figueroa M, Schilling JS, Chen F, Wang Z. Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing. Plos One. 10: e0132628. PMID 26177194 DOI: 10.1371/Journal.Pone.0132628  0.463
2015 Tilgner H, Jahanbani F, Blauwkamp T, Moshrefi A, Jaeger E, Chen F, Harel I, Bustamante CD, Rasmussen M, Snyder MP. Comprehensive transcriptome analysis using synthetic long-read sequencing reveals molecular co-association of distant splicing events. Nature Biotechnology. PMID 25985263 DOI: 10.1038/Nbt.3242  0.375
2014 Shi W, Moon CD, Leahy SC, Kang D, Froula J, Kittelmann S, Fan C, Deutsch S, Gagic D, Seedorf H, Kelly WJ, Atua R, Sang C, Soni P, Li D, ... ... Chen F, et al. Methane yield phenotypes linked to differential gene expression in the sheep rumen microbiome. Genome Research. 24: 1517-25. PMID 24907284 DOI: 10.1101/Gr.168245.113  0.304
2014 Singh G, Srinivasan R, Cheng J, Peng Z, Fujimura K, Baek MS, Panzer AR, Tringe SG, Chen F, Sorek R, Weng L, Bristow J, Wiener-Kronish JP, Lynch SV. Rearrangement of a large novel Pseudomonas aeruginosa gene island in strains isolated from a patient developing ventilator-associated pneumonia. Journal of Clinical Microbiology. 52: 2430-8. PMID 24789195 DOI: 10.1128/Jcm.01626-13  0.397
2014 Martin JA, Johnson NV, Gross SM, Schnable J, Meng X, Wang M, Coleman-Derr D, Lindquist E, Wei CL, Kaeppler S, Chen F, Wang Z. A near complete snapshot of the Zea mays seedling transcriptome revealed from ultra-deep sequencing. Scientific Reports. 4: 4519. PMID 24682209 DOI: 10.1038/Srep04519  0.415
2012 Peng Z, Zhao Z, Nath N, Froula JL, Clum A, Zhang T, Cheng JF, Copeland AC, Pennacchio LA, Chen F. Generation of long insert pairs using a Cre-LoxP Inverse PCR approach. Plos One. 7: e29437. PMID 22253722 DOI: 10.1371/Journal.Pone.0029437  0.376
2011 Klenk HP, Lapidus A, Chertkov O, Copeland A, Del Rio TG, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Han C, Bruce D, Goodwin L, Pitluck S, Pati A, et al. Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010. Standards in Genomic Sciences. 5: 121-34. PMID 22180816 DOI: 10.4056/Sigs.2144922  0.469
2011 Fischer S, Brunk BP, Chen F, Gao X, Harb OS, Iodice JB, Shanmugam D, Roos DS, Stoeckert CJ. Using OrthoMCL to assign proteins to OrthoMCL-DB groups or to cluster proteomes into new ortholog groups. Current Protocols in Bioinformatics. Unit 6.12.1-19. PMID 21901743 DOI: 10.1002/0471250953.Bi0612S35  0.385
2011 Hess M, Sczyrba A, Egan R, Kim TW, Chokhawala H, Schroth G, Luo S, Clark DS, Chen F, Zhang T, Mackie RI, Pennacchio LA, Tringe SG, Visel A, Woyke T, et al. Metagenomic discovery of biomass-degrading genes and genomes from cow rumen. Science (New York, N.Y.). 331: 463-7. PMID 21273488 DOI: 10.1126/Science.1200387  0.46
2010 Copeland A, Sikorski J, Lapidus A, Nolan M, Glavina T, Del Rio, Lucas S, Chen F, Tice H, Pitluck S, Cheng JF, Pukall R, Chertkov O, Brettin T, Han C, et al. Erratum to: Complete genome sequence of Atopobium parvulum type strain (IPP 1246). Standards in Genomic Sciences. 2: 361-2. PMID 21304720 DOI: 10.4056/Sigs.992408  0.489
2010 von Jan M, Lapidus A, Del Rio TG, Copeland A, Tice H, Cheng JF, Lucas S, Chen F, Nolan M, Goodwin L, Han C, Pitluck S, Liolios K, Ivanova N, Mavromatis K, et al. Complete genome sequence of Archaeoglobus profundus type strain (AV18). Standards in Genomic Sciences. 2: 327-46. PMID 21304717 DOI: 10.4056/Sigs.942153  0.549
2010 Kiss H, Lang E, Lapidus A, Copeland A, Nolan M, Glavina Del Rio T, Chen F, Lucas S, Tice H, Cheng JF, Han C, Goodwin L, Pitluck S, Liolios K, Pati A, et al. Complete genome sequence of Denitrovibrio acetiphilus type strain (N2460). Standards in Genomic Sciences. 2: 270-9. PMID 21304711 DOI: 10.4056/Sigs.892105  0.521
2010 Pati A, Sikorski J, Gronow S, Munk C, Lapidus A, Copeland A, Glavina Del Tio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Han C, Detter JC, Bruce D, et al. Complete genome sequence of Brachyspira murdochii type strain (56-150). Standards in Genomic Sciences. 2: 260-9. PMID 21304710 DOI: 10.4056/Sigs.831993  0.534
2010 Spring S, Rachel R, Lapidus A, Davenport K, Tice H, Copeland A, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, et al. Complete genome sequence of Thermosphaera aggregans type strain (M11TL). Standards in Genomic Sciences. 2: 245-59. PMID 21304709 DOI: 10.4056/Sigs.821804  0.527
2010 Clum A, Tindall BJ, Sikorski J, Ivanova N, Mavromatis K, Lucas S, Glavina Del Rio T, Nolan M, Chen F, Tice H, Pitluck S, Cheng JF, Chertkov O, Brettin T, Han C, et al. Erratum to: Complete genome sequence of Pirellula staleyi type strain (ATCC 27377). Standards in Genomic Sciences. 2: 228-88. PMID 21304706 DOI: 10.4056/Sigs.881234  0.407
2010 Harmon-Smith M, Celia L, Chertkov O, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S, Tice H, Cheng JF, Han C, Detter JC, Bruce D, Goodwin L, Pitluck S, ... ... Chen F, et al. Complete genome sequence of Sebaldella termitidis type strain (NCTC 11300). Standards in Genomic Sciences. 2: 220-7. PMID 21304705 DOI: 10.4056/Sigs.811799  0.506
2010 Pukall R, Lapidus A, Glavina Del Rio T, Copeland A, Tice H, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Mavromatis K, Ivanova N, Ovchinnikova G, et al. Complete genome sequence of Conexibacter woesei type strain (ID131577). Standards in Genomic Sciences. 2: 212-9. PMID 21304704 DOI: 10.4056/Sigs.751339  0.489
2010 Sikorski J, Lapidus A, Copeland A, Misra M, Glavina Del Rio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Jando M, Schneider S, Bruce D, Goodwin L, Pitluck S, et al. Complete genome sequence of Segniliparus rotundus type strain (CDC 1076). Standards in Genomic Sciences. 2: 203-11. PMID 21304703 DOI: 10.4056/Sigs.791633  0.545
2010 Wirth R, Sikorski J, Brambilla E, Misra M, Lapidus A, Copeland A, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Han C, Detter JC, Tapia R, Bruce D, et al. Complete genome sequence of Thermocrinis albus type strain (HI 11/12). Standards in Genomic Sciences. 2: 194-202. PMID 21304702 DOI: 10.4056/Sigs.761490  0.517
2010 Pukall R, Lapidus A, Glavina Del Rio T, Copeland A, Tice H, Cheng JF, Lucas S, Chen F, Nolan M, Labutti K, Pati A, Ivanova N, Mavromatis K, Mikhailova N, Pitluck S, et al. Complete genome sequence of Kribbella flavida type strain (IFO 14399). Standards in Genomic Sciences. 2: 186-93. PMID 21304701 DOI: 10.4056/Sigs.731321  0.542
2010 Lail K, Sikorski J, Saunders E, Lapidus A, Glavina Del Rio T, Copeland A, Tice H, Cheng JF, Lucas S, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, ... ... Chen F, et al. Complete genome sequence of Spirosoma linguale type strain (1). Standards in Genomic Sciences. 2: 176-85. PMID 21304700 DOI: 10.4056/Sigs.741334  0.551
2010 Tice H, Mayilraj S, Sims D, Lapidus A, Nolan M, Lucas S, Glavina Del Rio T, Copeland A, Cheng JF, Meincke L, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, ... ... Chen F, et al. Complete genome sequence of Nakamurella multipartita type strain (Y-104). Standards in Genomic Sciences. 2: 168-75. PMID 21304699 DOI: 10.4056/Sigs.721316  0.539
2010 Ivanova N, Sikorski J, Jando M, Munk C, Lapidus A, Glavina Del Rio T, Copeland A, Tice H, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, et al. Complete genome sequence of Geodermatophilus obscurus type strain (G-20). Standards in Genomic Sciences. 2: 158-67. PMID 21304698 DOI: 10.4056/Sigs.711311  0.519
2010 Sikorski J, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Saunders E, Bruce D, Goodwin L, Pitluck S, Ovchinnikova G, Pati A, et al. Complete genome sequence of Sulfurospirillum deleyianum type strain (5175). Standards in Genomic Sciences. 2: 149-57. PMID 21304697 DOI: 10.4056/Sigs.671209  0.536
2010 Chang YJ, Pukall R, Saunders E, Lapidus A, Copeland A, Nolan M, Glavina Del Rio T, Lucas S, Chen F, Tice H, Cheng JF, Han C, Detter JC, Bruce D, Goodwin L, et al. Complete genome sequence of Acidaminococcus fermentans type strain (VR4). Standards in Genomic Sciences. 3: 1-14. PMID 21304687 DOI: 10.4056/Sigs.1002553  0.55
2010 Saunders E, Tindall BJ, Fähnrich R, Lapidus A, Copeland A, Del Rio TG, Lucas S, Chen F, Tice H, Cheng JF, Han C, Detter JC, Bruce D, Goodwin L, Chain P, et al. Complete genome sequence of Haloterrigena turkmenica type strain (4k). Standards in Genomic Sciences. 2: 107-16. PMID 21304683 DOI: 10.4056/Sigs.681272  0.545
2010 Ivanova N, Daum C, Lang E, Abt B, Kopitz M, Saunders E, Lapidus A, Lucas S, Glavina Del Rio T, Nolan M, Tice H, Copeland A, Cheng JF, Chen F, Bruce D, et al. Complete genome sequence of Haliangium ochraceum type strain (SMP-2). Standards in Genomic Sciences. 2: 96-106. PMID 21304682 DOI: 10.4056/Sigs.69.1277  0.546
2010 Glavina Del Rio T, Abt B, Spring S, Lapidus A, Nolan M, Tice H, Copeland A, Cheng JF, Chen F, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, Mikhailova N, et al. Complete genome sequence of Chitinophaga pinensis type strain (UQM 2034). Standards in Genomic Sciences. 2: 87-95. PMID 21304681 DOI: 10.4056/Sigs.661199  0.542
2010 Gronow S, Welnitz S, Lapidus A, Nolan M, Ivanova N, Glavina Del Rio T, Copeland A, Chen F, Tice H, Pitluck S, Cheng JF, Saunders E, Brettin T, Han C, Detter JC, et al. Complete genome sequence of Veillonella parvula type strain (Te3). Standards in Genomic Sciences. 2: 57-65. PMID 21304678 DOI: 10.4056/Sigs.521107  0.533
2010 Pati A, Labutti K, Pukall R, Nolan M, Glavina Del Rio T, Tice H, Cheng JF, Lucas S, Chen F, Copeland A, Ivanova N, Mavromatis K, Mikhailova N, Pitluck S, Bruce D, et al. Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022). Standards in Genomic Sciences. 2: 49-56. PMID 21304677 DOI: 10.4056/Sigs.601105  0.544
2010 Spring S, Nolan M, Lapidus A, Glavina Del Rio T, Copeland A, Tice H, Cheng JF, Lucas S, Land M, Chen F, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, et al. Complete genome sequence of Desulfohalobium retbaense type strain (HR(100)). Standards in Genomic Sciences. 2: 38-48. PMID 21304676 DOI: 10.4056/Sigs.581048  0.543
2010 Nolan M, Sikorski J, Jando M, Lucas S, Lapidus A, Glavina Del Rio T, Chen F, Tice H, Pitluck S, Cheng JF, Chertkov O, Sims D, Meincke L, Brettin T, Han C, et al. Complete genome sequence of Streptosporangium roseum type strain (NI 9100). Standards in Genomic Sciences. 2: 29-37. PMID 21304675 DOI: 10.4056/Sigs.631049  0.55
2010 Ivanova N, Sikorski J, Jando M, Lapidus A, Nolan M, Lucas S, Del Rio TG, Tice H, Copeland A, Cheng JF, Chen F, Bruce D, Goodwin L, Pitluck S, Mavromatis K, et al. Complete genome sequence of Gordonia bronchialis type strain (3410). Standards in Genomic Sciences. 2: 19-28. PMID 21304674 DOI: 10.4056/Sigs.611106  0.548
2010 Mavromatis K, Sikorski J, Lapidus A, Glavina Del Rio T, Copeland A, Tice H, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Ovchinnikova G, et al. Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IA). Standards in Genomic Sciences. 2: 9-18. PMID 21304673 DOI: 10.4056/Sigs.591104  0.541
2010 Foster B, Pukall R, Abt B, Nolan M, Glavina Del Rio T, Chen F, Lucas S, Tice H, Pitluck S, Cheng JF, Chertkov O, Brettin T, Han C, Detter JC, Bruce D, et al. Complete genome sequence of Xylanimonas cellulosilytica type strain (XIL07). Standards in Genomic Sciences. 2: 1-8. PMID 21304672 DOI: 10.4056/Sigs.571102  0.545
2010 Spring S, Scheuner C, Lapidus A, Lucas S, Glavina Del Rio T, Tice H, Copeland A, Cheng JF, Chen F, Nolan M, Saunders E, Pitluck S, Liolios K, Ivanova N, Mavromatis K, et al. The genome sequence of Methanohalophilus mahii SLP(T) reveals differences in the energy metabolism among members of the Methanosarcinaceae inhabiting freshwater and saline environments. Archaea (Vancouver, B.C.). 2010: 690737. PMID 21234345 DOI: 10.1155/2010/690737  0.492
2010 Bahl A, Davis PH, Behnke M, Dzierszinski F, Jagalur M, Chen F, Shanmugam D, White MW, Kulp D, Roos DS. A novel multifunctional oligonucleotide microarray for Toxoplasma gondii Bmc Genomics. 11. PMID 20974003 DOI: 10.1186/1471-2164-11-603  0.378
2010 He S, Wurtzel O, Singh K, Froula JL, Yilmaz S, Tringe SG, Wang Z, Chen F, Lindquist EA, Sorek R, Hugenholtz P. Validation of two ribosomal RNA removal methods for microbial metatranscriptomics. Nature Methods. 7: 807-12. PMID 20852648 DOI: 10.1038/Nmeth.1507  0.357
2010 Peixoto L, Chen F, Harb OS, Davis PH, Beiting DP, Brownback CS, Ouloguem D, Roos DS. Integrative genomic approaches highlight a family of parasite-specific kinases that regulate host responses. Cell Host & Microbe. 8: 208-18. PMID 20709297 DOI: 10.1016/J.Chom.2010.07.004  0.368
2010 Hudson TJ, Anderson W, Artez A, Barker AD, Bell C, Bernabé RR, Bhan MK, Calvo F, Eerola I, Gerhard DS, Guttmacher A, Guyer M, Hemsley FM, Jennings JL, ... ... Chen F, et al. International network of cancer genome projects. Nature. 464: 993-8. PMID 20393554 DOI: 10.1038/Nature08987  0.374
2010 Engelbrektson A, Kunin V, Wrighton KC, Zvenigorodsky N, Chen F, Ochman H, Hugenholtz P. Experimental factors affecting PCR-based estimates of microbial species richness and evenness. The Isme Journal. 4: 642-7. PMID 20090784 DOI: 10.1038/Ismej.2009.153  0.32
2010 Wurtzel O, Sapra R, Chen F, Zhu Y, Simmons BA, Sorek R. A single-base resolution map of an archaeal transcriptome. Genome Research. 20: 133-41. PMID 19884261 DOI: 10.1101/Gr.100396.109  0.356
2010 Singh K, Froula J, Trice H, Pennacchio LA, Chen F. Gap Closing/Finishing by Targeted Genomic Region Enrichment and Sequencing Lawrence Berkeley National Laboratory. DOI: 10.2172/985324  0.471
2009 Clum A, Tindall BJ, Sikorski J, Ivanova N, Mavrommatis K, Lucas S, Glavina T, Del Rio, Nolan M, Chen F, Tice H, Pitluck S, Cheng JF, Chertkov O, Brettin T, et al. Complete genome sequence of Pirellula staleyi type strain (ATCC 27377). Standards in Genomic Sciences. 1: 308-16. PMID 21304671 DOI: 10.4056/Sigs.51657  0.554
2009 Nolan M, Gronow S, Lapidus A, Ivanova N, Copeland A, Lucas S, Del Rio TG, Chen F, Tice H, Pitluck S, Cheng JF, Sims D, Meincke L, Bruce D, Goodwin L, et al. Complete genome sequence of Streptobacillus moniliformis type strain (9901). Standards in Genomic Sciences. 1: 300-7. PMID 21304670 DOI: 10.4056/Sigs.48727  0.547
2009 Nolan M, Tindall BJ, Pomrenke H, Lapidus A, Copeland A, Glavina Del Rio T, Lucas S, Chen F, Tice H, Cheng JF, Saunders E, Han C, Bruce D, Goodwin L, Chain P, et al. Complete genome sequence of Rhodothermus marinus type strain (R-10). Standards in Genomic Sciences. 1: 283-90. PMID 21304669 DOI: 10.4056/Sigs.46736  0.514
2009 Tindall BJ, Schneider S, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Saunders E, Bruce D, Goodwin L, Pitluck S, Mikhailova N, et al. Complete genome sequence of Halomicrobium mukohataei type strain (arg-2). Standards in Genomic Sciences. 1: 270-7. PMID 21304667 DOI: 10.4056/Sigs.42644  0.544
2009 Pukall R, Gehrich-Schröter G, Lapidus A, Nolan M, Glavina Del Rio T, Lucas S, Chen F, Tice H, Pitluck S, Cheng JF, Copeland A, Saunders E, Brettin T, Detter JC, Bruce D, et al. Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134). Standards in Genomic Sciences. 1: 262-9. PMID 21304666 DOI: 10.4056/Sigs.41646  0.549
2009 Chovatia M, Sikorski J, Schröder M, Lapidus A, Nolan M, Tice H, Glavina Del Rio T, Copeland A, Cheng JF, Lucas S, Chen F, Bruce D, Goodwin L, Pitluck S, Ivanova N, et al. Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883). Standards in Genomic Sciences. 1: 254-61. PMID 21304665 DOI: 10.4056/Sigs.40645  0.53
2009 Spring S, Lapidus A, Schröder M, Gleim D, Sims D, Meincke L, Glavina Del Rio T, Tice H, Copeland A, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, et al. Complete genome sequence of Desulfotomaculum acetoxidans type strain (5575). Standards in Genomic Sciences. 1: 242-53. PMID 21304664 DOI: 10.4056/Sigs.39508  0.529
2009 Pukall R, Lapidus A, Nolan M, Copeland A, Glavina Del Rio T, Lucas S, Chen F, Tice H, Cheng JF, Chertkov O, Bruce D, Goodwin L, Kuske C, Brettin T, Detter JC, et al. Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1). Standards in Genomic Sciences. 1: 234-41. PMID 21304663 DOI: 10.4056/Sigs.37633  0.549
2009 Munk C, Lapidus A, Copeland A, Jando M, Mayilraj S, Glavina Del Rio T, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Han C, Detter JC, Bruce D, Goodwin L, et al. Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21). Standards in Genomic Sciences. 1: 234-41. PMID 21304662 DOI: 10.4056/Sigs.47643  0.531
2009 Han C, Sikorski J, Lapidus A, Nolan M, Glavina Del Rio T, Tice H, Cheng JF, Lucas S, Chen F, Copeland A, Ivanova N, Mavromatis K, Ovchinnikova G, Pati A, Bruce D, et al. Complete genome sequence of Kangiella koreensis type strain (SW-125). Standards in Genomic Sciences. 1: 226-33. PMID 21304661 DOI: 10.4056/Sigs.36635  0.542
2009 Anderson I, Tindall BJ, Pomrenke H, Göker M, Lapidus A, Nolan M, Copeland A, Glavina Del Rio T, Chen F, Tice H, Cheng JF, Lucas S, Chertkov O, Bruce D, Brettin T, et al. Complete genome sequence of Halorhabdus utahensis type strain (AX-2). Standards in Genomic Sciences. 1: 218-25. PMID 21304660 DOI: 10.4056/Sigs.31864  0.543
2009 Saunders E, Pukall R, Abt B, Lapidus A, Glavina Del Rio T, Copeland A, Tice H, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, et al. Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255). Standards in Genomic Sciences. 1: 174-82. PMID 21304654 DOI: 10.4056/Sigs.33592  0.534
2009 Copeland A, Sikorski J, Lapidus A, Nolan M, Del Rio TG, Lucas S, Chen F, Tice H, Pitluck S, Cheng JF, Pukall R, Chertkov O, Brettin T, Han C, Detter JC, et al. Complete genome sequence of Atopobium parvulum type strain (IPP 1246). Standards in Genomic Sciences. 1: 166-73. PMID 21304653 DOI: 10.4056/Sigs.29547  0.552
2009 Labutti K, Pukall R, Steenblock K, Glavina Del Rio T, Tice H, Copeland A, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, et al. Complete genome sequence of Anaerococcus prevotii type strain (PC1). Standards in Genomic Sciences. 1: 159-65. PMID 21304652 DOI: 10.4056/Sigs.24194  0.548
2009 Malfatti S, Tindall BJ, Schneider S, Fähnrich R, Lapidus A, Labuttii K, Copeland A, Glavina Del Rio T, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Bruce D, Goodwin L, et al. Complete genome sequence of Halogeometricum borinquense type strain (PR3). Standards in Genomic Sciences. 1: 150-9. PMID 21304651 DOI: 10.4056/Sigs.23264  0.545
2009 Pati A, Sikorski J, Nolan M, Lapidus A, Copeland A, Glavina Del Rio T, Lucas S, Chen F, Tice H, Pitluck S, Cheng JF, Chertkov O, Brettin T, Han C, Detter JC, et al. Complete genome sequence of Saccharomonospora viridis type strain (P101). Standards in Genomic Sciences. 1: 141-9. PMID 21304650 DOI: 10.4056/Sigs.20263  0.534
2009 Lang E, Lapidus A, Chertkov O, Brettin T, Detter JC, Han C, Copeland A, Glavina Del Rio T, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Land M, Hauser L, et al. Complete genome sequence of Dyadobacter fermentans type strain (NS114). Standards in Genomic Sciences. 1: 133-40. PMID 21304649 DOI: 10.4056/Sigs.19262  0.541
2009 Ivanova N, Gronow S, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Saunders E, Bruce D, Goodwin L, Brettin T, Detter JC, et al. Complete genome sequence of Leptotrichia buccalis type strain (C-1013-b). Standards in Genomic Sciences. 1: 126-32. PMID 21304648 DOI: 10.4056/Sigs.1854  0.546
2009 Copeland A, Lapidus A, Glavina Del Rio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Bruce D, Goodwin L, Pitluck S, Mikhailova N, Pati A, Ivanova N, Mavromatis K, et al. Complete genome sequence of Catenulispora acidiphila type strain (ID 139908). Standards in Genomic Sciences. 1: 119-25. PMID 21304647 DOI: 10.4056/Sigs.17259  0.538
2009 Ivanova N, Sikorski J, Sims D, Brettin T, Detter JC, Han C, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Bruce D, et al. Complete genome sequence of Sanguibacter keddieii type strain (ST-74). Standards in Genomic Sciences. 1: 110-8. PMID 21304646 DOI: 10.4056/Sigs.16197  0.531
2009 Mavrommatis K, Gronow S, Saunders E, Land M, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Bruce D, Goodwin L, Pitluck S, et al. Complete genome sequence of Capnocytophaga ochracea type strain (VPI 2845). Standards in Genomic Sciences. 1: 101-9. PMID 21304645 DOI: 10.4056/Sigs.15195  0.536
2009 Mavrommatis K, Pukall R, Rohde C, Chen F, Sims D, Brettin T, Kuske C, Detter JC, Han C, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S, Tice H, et al. Complete genome sequence of Cryptobacterium curtum type strain (12-3). Standards in Genomic Sciences. 1: 93-100. PMID 21304644 DOI: 10.4056/Sigs.12260  0.545
2009 Han C, Spring S, Lapidus A, Del Rio TG, Tice H, Copeland A, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, et al. Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3). Standards in Genomic Sciences. 1: 54-62. PMID 21304637 DOI: 10.4056/Sigs.22138  0.541
2009 Land M, Lapidus A, Mayilraj S, Chen F, Copeland A, Del Rio TG, Nolan M, Lucas S, Tice H, Cheng JF, Chertkov O, Bruce D, Goodwin L, Pitluck S, Rohde M, et al. Complete genome sequence of Actinosynnema mirum type strain (101). Standards in Genomic Sciences. 1: 46-53. PMID 21304636 DOI: 10.4056/Sigs.21137  0.555
2009 Clum A, Nolan M, Lang E, Glavina Del Rio T, Tice H, Copeland A, Cheng JF, Lucas S, Chen F, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavrommatis K, Mikhailova N, et al. Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICP). Standards in Genomic Sciences. 1: 38-45. PMID 21304635 DOI: 10.4056/Sigs.1463  0.542
2009 Copeland A, Spring S, Göker M, Schneider S, Lapidus A, Del Rio TG, Tice H, Cheng JF, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavrommatis K, et al. Complete genome sequence of Desulfomicrobium baculatum type strain (X). Standards in Genomic Sciences. 1: 29-37. PMID 21304634 DOI: 10.4056/Sigs.13134  0.528
2009 Land M, Pukall R, Abt B, Göker M, Rohde M, Glavina Del Rio T, Tice H, Copeland A, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, et al. Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122). Standards in Genomic Sciences. 1: 21-8. PMID 21304633 DOI: 10.4056/Sigs.1162  0.535
2009 Sims D, Brettin T, Detter JC, Han C, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Bruce D, Goodwin L, Pitluck S, et al. Complete genome sequence of Kytococcus sedentarius type strain (541). Standards in Genomic Sciences. 1: 12-20. PMID 21304632 DOI: 10.4056/Sigs.761  0.545
2009 Lapidus A, Pukall R, Labuttii K, Copeland A, Del Rio TG, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Bruce D, Goodwin L, Pitluck S, Rohde M, Göker M, et al. Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10). Standards in Genomic Sciences. 1: 3-11. PMID 21304631 DOI: 10.4056/Sigs.492  0.549
2009 Wu D, Hugenholtz P, Mavromatis K, Pukall R, Dalin E, Ivanova NN, Kunin V, Goodwin L, Wu M, Tindall BJ, Hooper SD, Pati A, Lykidis A, Spring S, Anderson IJ, ... ... Chen F, et al. A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. Nature. 462: 1056-60. PMID 20033048 DOI: 10.1038/Nature08656  0.521
2009 Peterson ME, Chen F, Saven JG, Roos DS, Babbitt PC, Sali A. Evolutionary constraints on structural similarity in orthologs and paralogs. Protein Science : a Publication of the Protein Society. 18: 1306-15. PMID 19472362 DOI: 10.1002/Pro.143  0.478
2009 Zhang Z, Alpert D, Francis R, Chatterjee B, Yu Q, Tansey T, Sabol SL, Cui C, Bai Y, Koriabine M, Yoshinaga Y, Cheng JF, Chen F, Martin J, Schackwitz W, et al. Massively parallel sequencing identifies the gene Megf8 with ENU-induced mutation causing heterotaxy. Proceedings of the National Academy of Sciences of the United States of America. 106: 3219-24. PMID 19218456 DOI: 10.1073/Pnas.0813400106  0.33
2009 Visel A, Blow MJ, Li Z, Zhang T, Akiyama JA, Holt A, Plajzer-Frick I, Shoukry M, Wright C, Chen F, Afzal V, Ren B, Rubin EM, Pennacchio LA. ChIP-seq accurately predicts tissue-specific activity of enhancers. Nature. 457: 854-8. PMID 19212405 DOI: 10.1038/Nature07730  0.409
2008 Agüero F, Al-Lazikani B, Aslett M, Berriman M, Buckner FS, Campbell RK, Carmona S, Carruthers IM, Chan AW, Chen F, Crowther GJ, Doyle MA, Hertz-Fowler C, Hopkins AL, McAllister G, et al. Genomic-scale prioritization of drug targets: the TDR Targets database. Nature Reviews. Drug Discovery. 7: 900-7. PMID 18927591 DOI: 10.1038/Nrd2684  0.309
2008 Smith DR, Quinlan AR, Peckham HE, Makowsky K, Tao W, Woolf B, Shen L, Donahue WF, Tusneem N, Stromberg MP, Stewart DA, Zhang L, Ranade SS, Warner JB, Lee CC, ... ... Chen F, et al. Rapid whole-genome mutational profiling using next-generation sequencing technologies. Genome Research. 18: 1638-42. PMID 18775913 DOI: 10.1101/Gr.077776.108  0.405
2007 Kettler GC, Martiny AC, Huang K, Zucker J, Coleman ML, Rodrigue S, Chen F, Lapidus A, Ferriera S, Johnson J, Steglich C, Church GM, Richardson P, Chisholm SW. Patterns and implications of gene gain and loss in the evolution of Prochlorococcus. Plos Genetics. 3: e231. PMID 18159947 DOI: 10.1371/Journal.Pgen.0030231  0.448
2007 Chen F, Mackey AJ, Vermunt JK, Roos DS. Assessing Performance of Orthology Detection Strategies Applied to Eukaryotic Genomes Plos One. 2. PMID 17440619 DOI: 10.1371/Journal.Pone.0000383  0.387
2006 Noonan JP, Coop G, Kudaravalli S, Smith D, Krause J, Alessi J, Chen F, Platt D, Pääbo S, Pritchard JK, Rubin EM. Sequencing and analysis of Neanderthal genomic DNA. Science (New York, N.Y.). 314: 1113-8. PMID 17110569 DOI: 10.1126/Science.1131412  0.489
2006 Kämper J, Kahmann R, Bölker M, Ma LJ, Brefort T, Saville BJ, Banuett F, Kronstad JW, Gold SE, Müller O, Perlin MH, Wösten HA, de Vries R, Ruiz-Herrera J, Reynaga-Peña CG, ... ... Chen F, et al. Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis. Nature. 444: 97-101. PMID 17080091 DOI: 10.1038/Nature05248  0.442
2006 Chen F, Mackey AJ, Stoeckert CJ, Roos DS. OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups Nucleic Acids Research.. 34. PMID 16381887 DOI: 10.1093/Nar/Gkj123  0.399
2004 Song Y, Tong Z, Wang J, Wang L, Guo Z, Han Y, Zhang J, Pei D, Zhou D, Qin H, Pang X, Han Y, Zhai J, Li M, Cui B, ... ... Chen F, et al. Complete genome sequence of Yersinia pestis strain 91001, an isolate avirulent to humans. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 11: 179-97. PMID 15368893 DOI: 10.1093/Dnares/11.3.179  0.456
2001 Footz TK, Brinkman-Mills P, Banting GS, Maier SA, Riazi MA, Bridgland L, Hu S, Birren B, Minoshima S, Shimizu N, Pan H, Nguyen T, Fang F, Fu Y, Ray L, ... ... Chen F, et al. Analysis of the cat eye syndrome critical region in humans and the region of conserved synteny in mice: a search for candidate genes at or near the human chromosome 22 pericentromere. Genome Research. 11: 1053-70. PMID 11381032 DOI: 10.1101/Gr.154901  0.387
2001 Ji W, Chen F, Do T, Do A, Roe BA, Meisler MH. DQX1, an RNA-dependent ATPase homolog with a novel DEAQ box: expression pattern and genomic sequence comparison of the human and mouse genes. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 12: 456-61. PMID 11353393 DOI: 10.1007/S003350020032  0.406
2001 Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W, Funke R, Gage D, Harris K, Heaford A, Howland J, ... ... Chen F, et al. Initial sequencing and analysis of the human genome. Nature. 409: 860-921. PMID 11237011 DOI: 10.1038/35057062  0.469
2001 Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, Fitzhugh W, Funke R, Gage D, Harris K, Heaford A, Howland J, ... ... Chen F, et al. Erratum: Initial sequencing and analysis of the human genome: International Human Genome Sequencing Consortium (Nature (2001) 409 (860-921)) Nature. 412: 565-566. DOI: 10.1038/35087627  0.48
2000 Lund J, Chen F, Hua A, Roe B, Budarf M, Emanuel BS, Reeves RH. Comparative sequence analysis of 634 kb of the mouse chromosome 16 region of conserved synteny with the human velocardiofacial syndrome region on chromosome 22q11.2. Genomics. 63: 374-83. PMID 10704284 DOI: 10.1006/Geno.1999.6044  0.415
1999 Lund J, Roe B, Chen F, Budarf M, Galili N, Riblet R, Miller RD, Emanuel BS, Reeves RH. Sequence-ready physical map of the mouse chromosome 16 region with conserved synteny to the human velocardiofacial syndrome region on 22q11.2. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 10: 438-43. PMID 10337614 DOI: 10.1007/S003359901019  0.324
1996 Gong W, Emanuel BS, Collins J, Kim DH, Wang Z, Chen F, Zhang G, Roe B, Budarf ML. A transcription map of the DiGeorge and velo-cardio-facial syndrome minimal critical region on 22q11. Human Molecular Genetics. 5: 789-800. PMID 8776594 DOI: 10.1093/Hmg/5.6.789  0.343
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