Richard C. Cronn - Publications

Affiliations: 
Oregon State University, Corvallis, OR 
Area:
Botany Biology, Horticulture Agriculture, Forestry and Wildlife Agriculture, Molecular Biology

77 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Dziedzic E, Sidlauskas B, Cronn R, Anthony J, Cornwell T, Friesen TA, Konstantinidis P, Penaluna BE, Stein S, Levi T. Creating, curating and evaluating a mitogenomic reference database to improve regional species identification using environmental DNA. Molecular Ecology Resources. PMID 37602732 DOI: 10.1111/1755-0998.13855  0.407
2021 Charboneau JLM, Cronn RC, Liston A, Wojciechowski MF, Sanderson MJ. Plastome structural evolution and homoplastic inversions in Neo-Astragalus (Fabaceae). Genome Biology and Evolution. PMID 34534296 DOI: 10.1093/gbe/evab215  0.36
2021 Weitemier K, Penaluna BE, Hauck LL, Longway LJ, Garcia T, Cronn R. Estimating the genetic diversity of Pacific salmon and trout using multigene eDNA metabarcoding. Molecular Ecology. 30: 4970-4990. PMID 33594756 DOI: 10.1111/mec.15811  0.358
2020 Howe GT, Jayawickrama K, Kolpak SE, Kling J, Trappe M, Hipkins V, Ye T, Guida S, Cronn R, Cushman SA, McEvoy S. An Axiom SNP genotyping array for Douglas-fir. Bmc Genomics. 21: 9. PMID 31900111 DOI: 10.1186/S12864-019-6383-9  0.386
2020 Finch KN, Cronn RC, Richter MCA, Blanc-Jolivet C, Guerrero MCC, Beltrán LDS, García-Dávila CR, Coronado ENH, Palacios-Ramos S, Paredes-Villanueva K, Jones FA. Predicting the geographic origin of Spanish Cedar ( Cedrela odorata L.) based on DNA variation Conservation Genetics. 21: 625-639. DOI: 10.1007/S10592-020-01282-6  0.409
2019 Weitemier K, Straub SCK, Fishbein M, Bailey CD, Cronn RC, Liston A. A draft genome and transcriptome of common milkweed () as resources for evolutionary, ecological, and molecular studies in milkweeds and Apocynaceae. Peerj. 7: e7649. PMID 31579586 DOI: 10.7717/Peerj.7649  0.495
2019 Finch KN, Jones FA, Cronn RC. Genomic resources for the Neotropical tree genus Cedrela (Meliaceae) and its relatives. Bmc Genomics. 20: 58. PMID 30658593 DOI: 10.1186/S12864-018-5382-6  0.486
2019 Coble AA, Flinders CA, Homyack JA, Penaluna BE, Cronn RC, Weitemier K. eDNA as a tool for identifying freshwater species in sustainable forestry: A critical review and potential future applications. Science of the Total Environment. 649: 1157-1170. PMID 30308887 DOI: 10.1016/J.Scitotenv.2018.08.370  0.34
2018 Tang K, Ren J, Cronn R, Erickson DL, Milligan BG, Parker-Forney M, Spouge JL, Sun F. Alignment-free genome comparison enables accurate geographic sourcing of white oak DNA. Bmc Genomics. 19: 896. PMID 30526482 DOI: 10.1186/S12864-018-5253-1  0.452
2018 Lea MV, Syring J, Jennings T, Cronn R, Bruederle LP, Neale JR, Tomback DF. Development of nuclear microsatellite loci for Pinus albicaulis Engelm. (Pinaceae), a conifer of conservation concern. Plos One. 13: e0205423. PMID 30335779 DOI: 10.1371/Journal.Pone.0205423  0.401
2018 Wei N, Cronn R, Liston A, Ashman TL. Functional trait divergence and trait plasticity confer polyploid advantage in heterogeneous environments. The New Phytologist. PMID 30281801 DOI: 10.1111/Nph.15508  0.399
2018 Kovar L, Nageswara-Rao M, Ortega-Rodriguez S, Dugas DV, Straub S, Cronn R, Strickler SR, Hughes CE, Hanley KA, Rodriguez DN, Langhorst BW, Dimalanta ET, Bailey CD. PacBio-based mitochondrial genome assembly of Leucaena trichandra (Leguminosae) and an intrageneric assessment of mitochondrial RNA editing. Genome Biology and Evolution. PMID 30137422 DOI: 10.1093/Gbe/Evy179  0.458
2018 Baker EAG, Wegrzyn JL, Sezen UU, Falk T, Maloney PE, Vogler DR, Delfino-Mix A, Jensen C, Mitton J, Wright J, Knaus B, Rai H, Cronn R, Gonzalez-Ibeas D, Vasquez-Gross HA, et al. Comparative Transcriptomics Among Four White Pine Species. G3 (Bethesda, Md.). PMID 29559535 DOI: 10.1534/G3.118.200257  0.45
2017 Neale DB, McGuire PE, Wheeler NC, Stevens KA, Crepeau MW, Cardeno C, Zimin AV, Puiu D, Pertea GM, Sezen UU, Casola C, Koralewski TE, Paul R, Gonzalez-Ibeas D, Zaman S, ... Cronn R, et al. The Douglas-Fir Genome Sequence Reveals Specialization of the Photosynthetic Apparatus in Pinaceae. G3 (Bethesda, Md.). PMID 28751502 DOI: 10.1534/G3.117.300078  0.513
2017 Cronn R, Dolan PC, Jogdeo S, Wegrzyn JL, Neale DB, St Clair JB, Denver DR. Transcription through the eye of a needle: daily and annual cyclic gene expression variation in Douglas-fir needles. Bmc Genomics. 18: 558. PMID 28738815 DOI: 10.1186/S12864-017-3916-Y  0.342
2017 Pham KK, Hipp AL, Manos PS, Cronn RC. A Time and a Place for Everything: Phylogenetic history and geography as joint predictors of oak plastome phylogeny. Genome. PMID 28445658 DOI: 10.1139/Gen-2016-0191  0.508
2017 Holman G, Del Tredici P, Havill N, Lee NS, Cronn R, Cushman K, Mathews S, Raubeson L, Campbell CS. A New Species and Introgression in Eastern Asian Hemlocks (Pinaceae: Tsuga) Systematic Botany. 42: 733-746. DOI: 10.1600/036364417X696474  0.322
2016 Schroeder H, Cronn R, Yanbaev Y, Jennings T, Mader M, Degen B, Kersten B. Development of Molecular Markers for Determining Continental Origin of Wood from White Oaks (Quercus L. sect. Quercus). Plos One. 11: e0158221. PMID 27352242 DOI: 10.1371/Journal.Pone.0158221  0.438
2016 Syring JV, Tennessen JA, Jennings TN, Wegrzyn J, Scelfo-Dalbey C, Cronn R. Targeted Capture Sequencing in Whitebark Pine Reveals Range-Wide Demographic and Adaptive Patterns Despite Challenges of a Large, Repetitive Genome. Frontiers in Plant Science. 7: 484. PMID 27148310 DOI: 10.3389/Fpls.2016.00484  0.524
2015 Staton M, Best T, Khodwekar S, Owusu S, Xu T, Xu Y, Jennings T, Cronn R, Arumuganathan AK, Coggeshall M, Gailing O, Liang H, Romero-Severson J, Schlarbaum S, Carlson JE. Preliminary Genomic Characterization of Ten Hardwood Tree Species from Multiplexed Low Coverage Whole Genome Sequencing. Plos One. 10: e0145031. PMID 26698853 DOI: 10.1371/Journal.Pone.0145031  0.543
2015 Schmickl R, Liston A, Zeisek V, Oberlander K, Weitemier K, Straub SC, Cronn RC, Dreyer LL, Suda J. Phylogenetic marker development for target enrichment from transcriptome and genome skim data: the pipeline and its application in southern African Oxalis (Oxalidaceae). Molecular Ecology Resources. PMID 26577756 DOI: 10.1111/1755-0998.12487  0.549
2014 Liston A, Cronn R, Ashman TL. Fragaria: a genus with deep historical roots and ripe for evolutionary and ecological insights. American Journal of Botany. 101: 1686-99. PMID 25326614 DOI: 10.3732/Ajb.1400140  0.425
2014 Weitemier K, Straub SC, Cronn RC, Fishbein M, Schmickl R, McDonnell A, Liston A. Hyb-Seq: Combining target enrichment and genome skimming for plant phylogenomics. Applications in Plant Sciences. 2. PMID 25225629 DOI: 10.3732/Apps.1400042  0.503
2014 DeGiorgio M, Syring J, Eckert AJ, Liston A, Cronn R, Neale DB, Rosenberg NA. An empirical evaluation of two-stage species tree inference strategies using a multilocus dataset from North American pines. Bmc Evolutionary Biology. 14: 67. PMID 24678701 DOI: 10.1186/1471-2148-14-67  0.399
2014 Hayden KJ, Garbelotto M, Knaus BJ, Cronn RC, Rai H, Wright JW. Dual RNA-seq of the plant pathogen Phytophthora ramorum and its tanoak host Tree Genetics and Genomes. 10: 489-502. DOI: 10.1007/S11295-014-0698-0  0.377
2013 Jennings TN, Knaus BJ, Alderman K, Hennon PE, D'Amore DV, Cronn R. Microsatellite primers for the Pacific Northwest conifer Callitropsis nootkatensis (Cupressaceae). Applications in Plant Sciences. 1. PMID 25202587 DOI: 10.3732/Apps.1300025  0.424
2013 Straub SC, Cronn RC, Edwards C, Fishbein M, Liston A. Horizontal transfer of DNA from the mitochondrial to the plastid genome and its subsequent evolution in milkweeds (apocynaceae). Genome Biology and Evolution. 5: 1872-85. PMID 24029811 DOI: 10.1093/Gbe/Evt140  0.433
2013 Howe GT, Yu J, Knaus B, Cronn R, Kolpak S, Dolan P, Lorenz WW, Dean JF. A SNP resource for Douglas-fir: de novo transcriptome assembly and SNP detection and validation. Bmc Genomics. 14: 137. PMID 23445355 DOI: 10.1186/1471-2164-14-137  0.434
2013 Alexander A, Steel D, Slikas B, Hoekzema K, Carraher C, Parks M, Cronn R, Baker CS. Low diversity in the mitogenome of sperm whales revealed by next-generation sequencing. Genome Biology and Evolution. 5: 113-29. PMID 23254394 DOI: 10.1093/Gbe/Evs126  0.39
2013 Njuguna W, Liston A, Cronn R, Ashman TL, Bassil N. Insights into phylogeny, sex function and age of Fragaria based on whole chloroplast genome sequencing. Molecular Phylogenetics and Evolution. 66: 17-29. PMID 22982444 DOI: 10.1016/J.Ympev.2012.08.026  0.489
2013 Weitemier K, Straub S, Fishbein M, Cronn R, Liston A. Genome-enabled phylogeography in Asclepias cryptoceras F1000research. 4. DOI: 10.7490/F1000Research.1093839.1  0.416
2013 Ross-Davis AL, Stewart JE, Hanna JW, Kim MS, Knaus BJ, Cronn R, Rai H, Richardson BA, Mcdonald GI, Klopfenstein NB. Transcriptome of an Armillaria root disease pathogen reveals candidate genes involved in host substrate utilization at the host-pathogen interface Forest Pathology. 43: 468-477. DOI: 10.1111/Efp.12056  0.417
2013 Rai HS, Mock KE, Richardson BA, Cronn RC, Hayden KJ, Wright JW, Knaus BJ, Wolf PG. Transcriptome characterization and detection of gene expression differences in aspen (Populus tremuloides) Tree Genetics and Genomes. 9: 1031-1041. DOI: 10.1007/S11295-013-0615-Y  0.525
2012 Parks M, Cronn R, Liston A. Separating the wheat from the chaff: mitigating the effects of noise in a plastome phylogenomic data set from Pinus L. (Pinaceae). Bmc Evolutionary Biology. 12: 100. PMID 22731878 DOI: 10.1186/1471-2148-12-100  0.353
2012 Cronn R, Knaus BJ, Liston A, Maughan PJ, Parks M, Syring JV, Udall J. Targeted enrichment strategies for next-generation plant biology. American Journal of Botany. 99: 291-311. PMID 22312117 DOI: 10.3732/Ajb.1100356  0.453
2012 Straub SC, Parks M, Weitemier K, Fishbein M, Cronn RC, Liston A. Navigating the tip of the genomic iceberg: Next-generation sequencing for plant systematics. American Journal of Botany. 99: 349-64. PMID 22174336 DOI: 10.3732/Ajb.1100335  0.501
2011 Jennings TN, Knaus BJ, Kolpak S, Cronn R. Microsatellite primers for the Pacific Northwest endemic conifer Chamaecyparis lawsoniana (Cupressaceae). American Journal of Botany. 98: e323-5. PMID 22012929 DOI: 10.3732/Ajb.1100317  0.37
2011 Bajgain P, Richardson BA, Price JC, Cronn RC, Udall JA. Transcriptome characterization and polymorphism detection between subspecies of big sagebrush (Artemisia tridentata) Bmc Genomics. 12. PMID 21767398 DOI: 10.1186/1471-2164-12-370  0.495
2011 Jennings TN, Knaus BJ, Mullins TD, Haig SM, Cronn RC. Multiplexed microsatellite recovery using massively parallel sequencing Molecular Ecology Resources. 11: 1060-1067. PMID 21676207 DOI: 10.1111/J.1755-0998.2011.03033.X  0.485
2011 Straub SC, Fishbein M, Livshultz T, Foster Z, Parks M, Weitemier K, Cronn RC, Liston A. Building a model: developing genomic resources for common milkweed (Asclepias syriaca) with low coverage genome sequencing. Bmc Genomics. 12: 211. PMID 21542930 DOI: 10.1186/1471-2164-12-211  0.53
2011 Knaus BJ, Cronn R, Liston A, Pilgrim K, Schwartz MK. Mitochondrial genome sequences illuminate maternal lineages of conservation concern in a rare carnivore. Bmc Ecology. 11: 10. PMID 21507265 DOI: 10.1186/1472-6785-11-10  0.448
2011 Magbanua ZV, Ozkan S, Bartlett BD, Chouvarine P, Saski CA, Liston A, Cronn RC, Nelson CD, Peterson DG. Adventures in the enormous: a 1.8 million clone BAC library for the 21.7 Gb genome of loblolly pine. Plos One. 6: e16214. PMID 21283709 DOI: 10.1371/Journal.Pone.0016214  0.493
2010 Zapiola ML, Cronn RC, Mallory-Smith CA. Development of novel chloroplast microsatellite markers to identify species in the Agrostis complex (Poaceae) and related genera. Molecular Ecology Resources. 10: 738-40. PMID 21565082 DOI: 10.1111/J.1755-0998.2009.02828.X  0.398
2010 Whittall JB, Syring J, Parks M, Buenrostro J, Dick C, Liston A, Cronn R. Finding a (pine) needle in a haystack: Chloroplast genome sequence divergence in rare and widespread pines Molecular Ecology. 19: 100-114. PMID 20331774 DOI: 10.1111/J.1365-294X.2009.04474.X  0.544
2010 Johnson R, Stritch L, Olwell P, Lambert S, Horning ME, Cronn R. What are the best seed sources for ecosystem restoration on BLM and USFS lands Native Plants Journal. 11: 117-131. DOI: 10.2979/Npj.2010.11.2.117  0.359
2009 Hersch-Green EI, Cronn R. Tangled trios?: Characterizing a hybrid zone in Castilleja (Orobanchaceae). American Journal of Botany. 96: 1519-31. PMID 21628297 DOI: 10.3732/Ajb.0800357  0.39
2009 Parks M, Cronn R, Liston A. Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes. Bmc Biology. 7: 84. PMID 19954512 DOI: 10.1186/1741-7007-7-84  0.466
2009 Willyard A, Cronn R, Liston A. Reticulate evolution and incomplete lineage sorting among the ponderosa pines. Molecular Phylogenetics and Evolution. 52: 498-511. PMID 19249377 DOI: 10.1016/J.Ympev.2009.02.011  0.504
2009 Horning ME, Cronn RC. Development of variable microsatellite loci and range-wide characterization of nuclear genetic diversity in the important dryland shrub antelope bitterbrush (Purshia tridentata) Journal of Arid Environments. 73: 7-13. DOI: 10.1016/J.Jaridenv.2008.06.019  0.405
2008 Cronn R, Liston A, Parks M, Gernandt DS, Shen R, Mockler T. Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology. Nucleic Acids Research. 36: e122. PMID 18753151 DOI: 10.1093/Nar/Gkn502  0.51
2007 Liston A, Parker-Defeniks M, Syring JV, Willyard A, Cronn R. Interspecific phylogenetic analysis enhances intraspecific phylogeographical inference: a case study in Pinus lambertiana. Molecular Ecology. 16: 3926-37. PMID 17850554 DOI: 10.1111/J.1365-294X.2007.03461.X  0.43
2007 Syring J, Farrell K, Businský R, Cronn R, Liston A. Widespread genealogical nonmonophyly in species of Pinus subgenus Strobus. Systematic Biology. 56: 163-81. PMID 17454973 DOI: 10.1080/10635150701258787  0.458
2007 Willyard A, Ann W, Syring J, Gernandt DS, Liston A, Cronn R. Fossil calibration of molecular divergence infers a moderate mutation rate and recent radiations for pinus. Molecular Biology and Evolution. 24: 90-101. PMID 16997907 DOI: 10.1093/Molbev/Msl131  0.395
2007 Syring J, Del Castillo RF, Cronn R, Liston A. Multiple nuclear loci reveal the distinctiveness of the threatened, neotropical Pinus chiapensis Systematic Botany. 32: 703-717. DOI: 10.1600/036364407783390836  0.36
2006 Horning ME, Cronn RC. Length polymorphism scanning is an efficient approach for revealing chloroplast DNA variation. Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 49: 134-42. PMID 16498463 DOI: 10.1139/G05-093  0.427
2005 Syring J, Willyard A, Cronn R, Liston A. Evolutionary relationships among Pinus (Pinaceae) subsections inferred from multiple low-copy nuclear loci. American Journal of Botany. 92: 2086-100. PMID 21646125 DOI: 10.3732/Ajb.92.12.2086  0.458
2005 Álvarez I, Cronn R, Wendel JF. Phylogeny of the New World diploid cottons (Gossypium L., Malvaceae) based on sequences of three low-copy nuclear genes Plant Systematics and Evolution. 252: 199-214. DOI: 10.1007/S00606-004-0294-0  0.444
2004 Cronn R, Wendel JF. Cryptic trysts, genomic mergers, and plant speciation New Phytologist. 161: 133-142. DOI: 10.1111/J.1469-8137.2004.00947.X  0.462
2004 Small RL, Cronn RC, Wendel JF. Use of nuclear genes for phylogeny reconstruction in plants Australian Systematic Botany. 17: 145-170. DOI: 10.1071/Sb03015  0.482
2003 Cronn R, Small RL, Haselkorn T, Wendel JF. Cryptic repeated genomic recombination during speciation in Gossypium gossypioides. Evolution; International Journal of Organic Evolution. 57: 2475-89. PMID 14686525 DOI: 10.1111/J.0014-3820.2003.Tb01493.X  0.474
2003 Cronn RC, Adams KL. Quantitative analysis of transcript accumulation from genes duplicated by polyploidy using cDNA-SSCP. Biotechniques. 34: 726-30, 732, 734. PMID 12703297 DOI: 10.2144/03344St01  0.411
2003 Senchina DS, Alvarez I, Cronn RC, Liu B, Rong J, Noyes RD, Paterson AH, Wing RA, Wilkins TA, Wendel JF. Rate variation among nuclear genes and the age of polyploidy in Gossypium. Molecular Biology and Evolution. 20: 633-43. PMID 12679546 DOI: 10.1093/Molbev/Msg065  0.418
2003 Adams KL, Cronn R, Percifield R, Wendel JF. Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing. Proceedings of the National Academy of Sciences of the United States of America. 100: 4649-54. PMID 12665616 DOI: 10.1073/Pnas.0630618100  0.367
2003 Cedroni ML, Cronn RC, Adams KL, Wilkins TA, Wendel JF. Evolution and expression of MYB genes in diploid and polyploid cotton. Plant Molecular Biology. 51: 313-25. PMID 12602863 DOI: 10.1023/A:1022051100610  0.364
2002 Cronn RC, Small RL, Haselkorn T, Wendel JF. Rapid diversification of the cotton genus (Gossypium: Malvaceae) revealed by analysis of sixteen nuclear and chloroplast genes. American Journal of Botany. 89: 707-25. PMID 21665671 DOI: 10.3732/Ajb.89.4.707  0.487
2002 Cronn R, Cedroni M, Haselkorn T, Grover C, Wendel JF. PCR-mediated recombination in amplification products derived from polyploid cotton. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 104: 482-489. PMID 12582722 DOI: 10.1007/S001220100741  0.442
2002 Negi MS, Rajagopal J, Chauhan N, Cronn R, Lakshmikumaran M. Length and sequence heterogeneity in 5S rDNA of Populus deltoides. Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 45: 1181-8. PMID 12502265 DOI: 10.1139/G02-094  0.431
2002 Wendel JF, Cronn RC, Alvarez I, Liu B, Small RL, Senchina DS. Intron size and genome size in plants. Molecular Biology and Evolution. 19: 2346-52. PMID 12446829 DOI: 10.1093/Oxfordjournals.Molbev.A004062  0.435
2002 Wendel JF, Cronn RC, Johnston JS, Price HJ. Feast and famine in plant genomes. Genetica. 115: 37-47. PMID 12188047 DOI: 10.1023/A:1016020030189  0.481
2001 Liu B, Brubaker CL, Mergeai G, Cronn RC, Wendel JF. Polyploid formation in cotton is not accompanied by rapid genomic changes Genome. 44: 321-330. PMID 11444689 DOI: 10.1139/G01-011  0.468
2001 Applequist WL, Cronn R, Wendel JF. Comparative development of fiber in wild and cultivated cotton Evolution and Development. 3: 3-17. PMID 11256432 DOI: 10.1046/J.1525-142X.2001.00079.X  0.314
2001 Wendel JF, Cronn RC. Polyploidy and the evolutionary history of cotton Advances in Agronomy. 78: 139-186. DOI: 10.1016/S0065-2113(02)78004-8  0.522
1999 Cronn RC, Small RL, Wendel JF. Duplicated genes evolve independently after polyploid formation in cotton Proceedings of the National Academy of Sciences of the United States of America. 96: 14406-14411. PMID 10588718 DOI: 10.1073/Pnas.96.25.14406  0.539
1998 Small RL, Ryburn JA, Cronn RC, Seelanan T, Wendel JF. The tortoise and the hare: Choosing between noncoding plastome and nuclear Adh sequences for phylogeny reconstruction in a recently diverged plant group American Journal of Botany. 85: 1301-1315. DOI: 10.2307/2446640  0.477
1998 Cronn R, Wendel JF. Simple methods for isolating homoeologous loci from allopolyploid genomes Genome. 41: 756-762. DOI: 10.1139/G98-078  0.479
1997 Cronn R, Brothers M, Klier K, Bretting PK, Wendel JF. Allozyme variation in domesticated annual sunflower and its wild relatives Theoretical and Applied Genetics. 95: 532-545. DOI: 10.1007/S001220050594  0.344
1996 Cronn RC, Zhao X, Paterson AH, Wendel JF. Polymorphism and concerted evolution in a tandemly repeated gene family: 5S ribosomal DNA in diploid and allopolyploid cottons Journal of Molecular Evolution. 42: 685-705. PMID 8662014 DOI: 10.1007/Bf02338802  0.505
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