Jin Zhang - Publications

Affiliations: 
2009-2015 Plant Biology University of Texas at Austin, Austin, Texas, U.S.A. 

72 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Yang M, Wen Y, Zheng J, Zhang J, Zhao T, Feng J. Improving power of genome-wide association studies via transforming ordinal phenotypes into continuous phenotypes. Frontiers in Plant Science. 14: 1247181. PMID 38023883 DOI: 10.3389/fpls.2023.1247181  0.307
2023 Wang T, Chen S, Niu Q, Xu G, Lu C, Zhang J. Genomic Sequence Resource of , the Causative Pathogen of Pomegranate Pulp Rot Disease. Journal of Fungi (Basel, Switzerland). 9. PMID 37755017 DOI: 10.3390/jof9090909  0.416
2023 Chang E, Guo W, Chen J, Zhang J, Jia Z, Tschaplinski TJ, Yang X, Jiang Z, Liu J. Chromosome-level genome assembly of Quercus variabilis provides insights into the molecular mechanism of cork thickness. Plant Science : An International Journal of Experimental Plant Biology. 337: 111874. PMID 37742724 DOI: 10.1016/j.plantsci.2023.111874  0.326
2023 Li Y, Niu Z, Zhu M, Wang Z, Xu R, Li M, Zheng Z, Lu Z, Dong C, Hu H, Yang Y, Wu Y, Wang D, Yang J, Zhang J, et al. Multi-omics data provide insight into the adaptation of the glasshouse plant Rheum nobile to the alpine subnival zone. Communications Biology. 6: 906. PMID 37667004 DOI: 10.1038/s42003-023-05271-6  0.406
2023 Li Y, Wang Z, Zhu M, Niu Z, Li M, Zheng Z, Hu H, Lu Z, Zhang J, Wan D, Chen Q, Yang Y. A chromosome-scale Rhubarb (Rheum tanguticum) genome assembly provides insights into the evolution of anthraquinone biosynthesis. Communications Biology. 6: 867. PMID 37612424 DOI: 10.1038/s42003-023-05248-5  0.43
2023 Yao T, Yuan G, Lu H, Liu Y, Zhang J, Tuskan GA, Muchero W, Chen JG, Yang X. CRISPR/Cas9-based gene activation and base editing in . Horticulture Research. 10: uhad085. PMID 37323227 DOI: 10.1093/hr/uhad085  0.352
2023 Bryant N, Zhang J, Feng K, Shu M, Ployet R, Chen JG, Muchero W, Yoo CG, Tschaplinski TJ, Pu Y, Ragauskas AJ. Novel candidate genes for lignin structure identified through genome-wide association study of naturally varying . Frontiers in Plant Science. 14: 1153113. PMID 37215291 DOI: 10.3389/fpls.2023.1153113  0.348
2023 Cheng G, Wu D, Guo R, Li H, Wei R, Zhang J, Wei Z, Meng X, Yu H, Xie L, Lin L, Yao N, Zhou S. Chromosome-scale genomics, metabolomics, and transcriptomics provide insight into the synthesis and regulation of phenols in grapes. Frontiers in Plant Science. 14: 1124046. PMID 36760645 DOI: 10.3389/fpls.2023.1124046  0.402
2022 Zhang L, Guo W, Lu Y, Zhou T, Wang Y, Tang X, Zhang J. Genome-wide characterization of the inositol transporters gene family in Populus and functional characterization of PtINT1b in response to salt stress. International Journal of Biological Macromolecules. 228: 197-206. PMID 36572075 DOI: 10.1016/j.ijbiomac.2022.12.233  0.301
2022 Peng Q, Huang Z, Sun K, Liu Y, Yoon CW, Harrison RES, Schmitt DL, Zhu L, Wu Y, Tasan I, Zhao H, Zhang J, Zhong S, Chien S, Wang Y. Engineering inducible biomolecular assemblies for genome imaging and manipulation in living cells. Nature Communications. 13: 7933. PMID 36566209 DOI: 10.1038/s41467-022-35504-x  0.33
2022 Zhang J, Zhang S, Zheng Z, Lu Z, Yang Y. Genomic divergence between two sister species through linked selection and recombination. Ecology and Evolution. 12: e9611. PMID 36540075 DOI: 10.1002/ece3.9611  0.339
2022 Wei J, Liu P, Liu F, Jiang A, Qiao J, Pu Z, Wang B, Zhang J, Jia D, Li Y, Wang S, Dong B. EDomics: a comprehensive and comparative multi-omics database for animal evo-devo. Nucleic Acids Research. PMID 36318263 DOI: 10.1093/nar/gkac944  0.318
2022 Liu C, Zhu X, Zhang J, Shen M, Chen K, Fu X, Ma L, Liu X, Zhou C, Zhou DX, Wang G. eQTLs play critical roles in regulating gene expression and identifying key regulators in rice. Plant Biotechnology Journal. PMID 36087348 DOI: 10.1111/pbi.13912  0.308
2022 Hu H, Yang Y, Li A, Zheng Z, Zhang J, Liu J. Genomic divergence of Stellera chamaejasme through local selection across the Qinghai-Tibet Plateau and northern China. Molecular Ecology. PMID 35869662 DOI: 10.1111/mec.16622  0.384
2022 Zhang J, Yang Y, Tang J, Luo Y, Lv H, Chai S. The complete chloroplast genome sequence of (Orchidaceae). Mitochondrial Dna. Part B, Resources. 7: 969-970. PMID 35712546 DOI: 10.1080/23802359.2022.2080016  0.41
2021 Yates TB, Feng K, Zhang J, Singan V, Jawdy SS, Gunter LE, Ranjan P, Abraham PE, Barry K, Lipzen A, Pan C, Schmutz J, Chen JG, Tuskan GA, Muchero W. The ancient Salicoid genome duplication event: A platform for reconstruction of de Novo gene evolution in Populus trichocarpa. Genome Biology and Evolution. PMID 34469536 DOI: 10.1093/gbe/evab198  0.347
2020 Gao S, Wang B, Xie S, Xu X, Zhang J, Pei L, Yu Y, Yang W, Zhang Y. A high-quality reference genome of wild Cannabis sativa. Horticulture Research. 7: 73. PMID 33934118 DOI: 10.1038/s41438-020-0295-3  0.322
2020 Wei J, Zhang J, Lu Q, Ren P, Guo X, Wang J, Li X, Chang Y, Duan S, Wang S, Yu H, Zhang X, Yang X, Gao H, Dong B. Genomic basis of environmental adaptation in the leathery sea squirt (Styela clava). Molecular Ecology Resources. PMID 32531855 DOI: 10.1111/1755-0998.13209  0.345
2020 Gao S, Wang B, Xie S, Xu X, Zhang J, Pei L, Yu Y, Yang W, Zhang Y. A high-quality reference genome of wild . Horticulture Research. 7: 73. PMID 32377363 DOI: 10.1038/s41438-020-0295-3  0.344
2019 Song X, Wang J, Li N, Yu J, Meng F, Wei C, Liu C, Chen W, Nie F, Zhang Z, Gong K, Li X, Hu J, Yang Q, Li Y, ... ... Zhang J, et al. Deciphering the High Quality Genome Sequence of Coriander that Causes Controversial Feelings. Plant Biotechnology Journal. PMID 31799788 DOI: 10.1111/pbi.13310  0.368
2019 Zhang D, Zou H, Jakovlić I, Wu SG, Li M, Zhang J, Chen R, Li WX, Wang GT. Mitochondrial Genomes of Two Species (Platyhelminthes: Monogenea) Reveal the First rRNA Gene Rearrangement among the Neodermata. International Journal of Molecular Sciences. 20. PMID 31466297 DOI: 10.3390/ijms20174214  0.324
2019 Yuan J, Wang J, Yu J, Meng F, Zhao Y, Li J, Sun P, Sun S, Zhang Z, Liu C, Wei C, Guo H, Li X, Duan X, Shen S, ... ... Zhang J, et al. Alignment of Rutaceae Genomes Reveals Lower Genome Fractionation Level Than Eudicot Genomes Affected by Extra Polyploidization. Frontiers in Plant Science. 10: 986. PMID 31447866 DOI: 10.3389/fpls.2019.00986  0.378
2019 Liu B, Hu J, Zhang J. Evolutionary Divergence of Duplicated Genes in . Cells. 8. PMID 31083365 DOI: 10.3390/cells8050438  0.309
2019 Chen J, Hao Z, Guang X, Zhao C, Wang P, Xue L, Zhu Q, Yang L, Sheng Y, Zhou Y, Xu H, Xie H, Long X, Zhang J, Wang Z, et al. Author Correction: Liriodendron genome sheds light on angiosperm phylogeny and species-pair differentiation. Nature Plants. PMID 30675017 DOI: 10.1038/S41477-019-0368-1  0.316
2018 Chen J, Hao Z, Guang X, Zhao C, Wang P, Xue L, Zhu Q, Yang L, Sheng Y, Zhou Y, Xu H, Xie H, Long X, Zhang J, Wang Z, et al. Liriodendron genome sheds light on angiosperm phylogeny and species-pair differentiation. Nature Plants. PMID 30559417 DOI: 10.1038/S41477-018-0323-6  0.305
2018 Wang JP, Yu JG, Li J, Sun PC, Wang L, Yuan JQ, Meng FB, Sun SR, Li YX, Lei TY, Pan YX, Ge WN, Wang ZY, Zhang L, Song XM, ... ... Zhang J, et al. Two Likely Auto-Tetraploidization Events Shaped Kiwifruit Genome and Contributed to Establishment of the Actinidiaceae Family. Iscience. 7: 230-240. PMID 30267683 DOI: 10.1016/j.isci.2018.08.003  0.325
2018 Chen W, Yan Z, Li S, Huang N, Huang X, Zhang J, Zhong S. RNAs as Proximity-Labeling Media for Identifying Nuclear Speckle Positions Relative to the Genome. Iscience. 4: 204-215. PMID 30240742 DOI: 10.1016/J.Isci.2018.06.005  0.307
2018 Tuskan GA, Mewalal R, Gunter LE, Palla KJ, Carter K, Jacobson DA, Jones PC, Garcia BJ, Weighill DA, Hyatt PD, Yang Y, Zhang J, Reis N, Chen JG, Muchero W. Defining the genetic components of callus formation: A GWAS approach. Plos One. 13: e0202519. PMID 30118526 DOI: 10.1371/Journal.Pone.0202519  0.331
2018 Zhang J, Xu E, Ren C, Yang HJ, Zhang Y, Sun W, Kong X, Zhang W, Chen M, Huang EC, Chen X. Genetic ablation of Rbm38 promotes lymphomagenesis in the context of mutant p53 by downregulating PTEN. Cancer Research. PMID 29330147 DOI: 10.1158/0008-5472.Can-17-2457  0.301
2018 Mohibi S, Zhang J, Chen X. Abstract 4440: Differential regulation of p63 isoforms by alternative polyadenylation Cancer Research. 78: 4440-4440. DOI: 10.1158/1538-7445.Am2018-4440  0.311
2017 Zhang D, Zou H, Wu SG, Li M, Jakovlić I, Zhang J, Chen R, Wang GT, Li WX. Sequencing of the complete mitochondrial genome of a fish-parasitic flatworm Paratetraonchoides inermis (Platyhelminthes: Monogenea): tRNA gene arrangement reshuffling and implications for phylogeny. Parasites & Vectors. 10: 462. PMID 29017532 DOI: 10.1186/s13071-017-2404-1  0.31
2017 Guo H, Liu J, Luo L, Wei X, Zhang J, Qi Y, Zhang B, Liu H, Xiao P. Complete chloroplast genome sequences of Schisandra chinensis: genome structure, comparative analysis, and phylogenetic relationship of basal angiosperms. Science China. Life Sciences. PMID 28726162 DOI: 10.1007/s11427-017-9098-5  0.303
2017 Lu L, Li X, Hao Z, Yang L, Zhang J, Peng Y, Xu H, Lu Y, Zhang J, Shi J, Chen J, Cheng T. Phylogenetic studies and comparative chloroplast genome analyses elucidate the basal position of halophyte Nitraria sibirica (Nitrariaceae) in the Sapindales. Mitochondrial Dna. Part a, Dna Mapping, Sequencing, and Analysis. 1-11. PMID 28712318 DOI: 10.1080/24701394.2017.1350954  0.464
2017 Ruhlman TA, Zhang J, Blazier JC, Sabir JS, Jansen RK. Recombination-dependent replication and gene conversion homogenize repeat sequences and diversify plastid genome structure. American Journal of Botany. PMID 28400415 DOI: 10.3732/Ajb.1600453  0.759
2016 Lucchesi C, Zhang J, Chen X. Modulation of the p53 family network by RNA-binding proteins. Translational Cancer Research. 5: 676-684. PMID 28794999 DOI: 10.21037/Tcr.2016.08.30  0.337
2016 Zhang M, Zhang J, Yan W, Chen X. p73 expression is regulated by ribosomal protein RPL26 through mRNA translation and protein stability. Oncotarget. PMID 27825141 DOI: 10.18632/Oncotarget.13126  0.3
2016 Blazier JC, Jansen RK, Mower JP, Govindu M, Zhang J, Weng ML, Ruhlman TA. Variable presence of the inverted repeat and plastome stability in Erodium. Annals of Botany. PMID 27192713 DOI: 10.1093/Aob/Mcw065  0.716
2016 Yan W, Scoumanne A, Jung YS, Xu E, Zhang J, Zhang Y, Ren C, Sun P, Chen X. Mice deficient in poly(C)-binding protein 4 are susceptible to spontaneous tumors through increased expression of ZFP871 that targets p53 for degradation. Genes & Development. PMID 26915821 DOI: 10.1101/Gad.271890.115  0.338
2016 Ren C, Zhang J, Yan W, Zhang Y, Chen X. RNA-Binding Protein PCBP2 regulates p73 expression and p73-dependent antioxidant defense. The Journal of Biological Chemistry. PMID 26907686 DOI: 10.1074/Jbc.M115.712125  0.315
2016 Zhang J, Ruhlman TA, Sabir J, Blazier JC, Weng ML, Park S, Jansen RK. Coevolution between nuclear encoded DNA replication, recombination and repair genes and plastid genome complexity. Genome Biology and Evolution. PMID 26893456 DOI: 10.1093/Gbe/Evw033  0.694
2016 Zhao C, Zhang H, Liu G, Yang X, Zhang J. The complete mitochondrial genome of the Tibetan fox (Vulpes ferrilata) and implications for the phylogeny of Canidae. Comptes Rendus Biologies. PMID 26868757 DOI: 10.1016/j.crvi.2015.11.005  0.349
2016 Dou H, Zhao C, Yang X, Liu G, Zhang J, Zhang H. Complete mitochondrial genome of the Merlin (Falco columbarius). Mitochondrial Dna. 27: 1547-8. PMID 25186520 DOI: 10.3109/19401736.2014.953131  0.345
2016 Zhao C, Yang X, Zhang H, Zhang J, Chen L, Sha W, Liu G. The complete mitochondrial genome sequence of the maned wolf (Chrysocyon brachyurus). Mitochondrial Dna. 27: 539-40. PMID 24708104 DOI: 10.3109/19401736.2014.905847  0.373
2016 Zhao C, Zhang J, Zhang H, Yang X, Chen L, Sha W, Liu G. The complete mitochondrial genome sequence of the corsac fox (Vulpes corsac). Mitochondrial Dna. 27: 304-5. PMID 24660933 DOI: 10.3109/19401736.2014.892088  0.351
2016 Zhao C, Zhang H, Zhang J, Chen L, Sha W, Yang X, Liu G. The complete mitochondrial genome sequence of the Tibetan wolf (Canis lupus laniger). Mitochondrial Dna. 27: 7-8. PMID 24438245 DOI: 10.3109/19401736.2013.865181  0.323
2015 Zhang J, White NM, Schmidt HK, Fulton RS, Tomlinson C, Warren WC, Wilson R, Maher CA. INTEGRATE: Gene fusion discovery using whole genome and transcriptome data. Genome Research. PMID 26556708 DOI: 10.1101/gr.186114.114  0.31
2015 Tian FX, Zang JL, Wang T, Xie YL, Zhang J, Hu JJ. Aldehyde Dehydrogenase Gene Superfamily in Populus: Organization and Expression Divergence between Paralogous Gene Pairs. Plos One. 10: e0124669. PMID 25909656 DOI: 10.1371/journal.pone.0124669  0.307
2015 Ruhlman TA, Chang WJ, Chen JJ, Huang YT, Chan MT, Zhang J, Liao DC, Blazier JC, Jin X, Shih MC, Jansen RK, Lin CS. NDH expression marks major transitions in plant evolution and reveals coordinate intracellular gene loss. Bmc Plant Biology. 15: 100. PMID 25886915 DOI: 10.1186/S12870-015-0484-7  0.723
2015 Zhang J, Ruhlman TA, Sabir J, Blazier JC, Jansen RK. Coordinated rates of evolution between interacting plastid and nuclear genes in Geraniaceae. The Plant Cell. 27: 563-73. PMID 25724640 DOI: 10.1105/Tpc.114.134353  0.766
2015 Zhang J, Zhang H, Zhao C, Chen L, Sha W, Liu G. The complete mitochondrial genome sequence of the Tibetan red fox (Vulpes vulpes montana). Mitochondrial Dna. 26: 739-41. PMID 24456141 DOI: 10.3109/19401736.2013.845766  0.345
2015 Chen L, Zhang H, Zhang J, Zhao C, Sha W. The complete mitochondrial genome of Cuon alpinus lepturus. Mitochondrial Dna. 26: 767-8. PMID 24397760 DOI: 10.3109/19401736.2013.855742  0.336
2014 Chen X, Zhang J, Liu Q, Guo W, Zhao T, Ma Q, Wang G. Transcriptome sequencing and identification of cold tolerance genes in hardy Corylus species (C. heterophylla Fisch) floral buds. Plos One. 9: e108604. PMID 25268521 DOI: 10.1371/journal.pone.0108604  0.343
2014 Zhang H, Dou H, Yang X, Zhao C, Liu G, Zhang J. The complete mitochondrial genome sequence of the Sparrowhawk (Accipiter nisus). Mitochondrial Dna. 1-2. PMID 25208181 DOI: 10.3109/19401736.2014.958711  0.365
2014 Sabir J, Schwarz E, Ellison N, Zhang J, Baeshen NA, Mutwakil M, Jansen R, Ruhlman T. Evolutionary and biotechnology implications of plastid genome variation in the inverted-repeat-lacking clade of legumes. Plant Biotechnology Journal. 12: 743-54. PMID 24618204 DOI: 10.1111/Pbi.12179  0.749
2014 Xu E, Zhang J, Zhang M, Jiang Y, Cho SJ, Chen X. RNA-binding protein RBM24 regulates p63 expression via mRNA stability. Molecular Cancer Research : McR. 12: 359-69. PMID 24375645 DOI: 10.1158/1541-7786.Mcr-13-0526  0.32
2014 Jiang Y, Zhang M, Qian Y, Xu E, Zhang J, Chen X. Rbm24, an RNA-binding protein and a target of p53, regulates p21 expression via mRNA stability. The Journal of Biological Chemistry. 289: 3164-75. PMID 24356969 DOI: 10.1074/Jbc.M113.524413  0.303
2014 Zhang H, Zhang J, Chen L, Liu G. The complete mitochondrial genome of Chinese Shinjang wolf. Mitochondrial Dna. 25: 106-8. PMID 23656292 DOI: 10.3109/19401736.2013.786707  0.373
2013 Zhang J, Ruhlman TA, Mower JP, Jansen RK. Comparative analyses of two Geraniaceae transcriptomes using next-generation sequencing. Bmc Plant Biology. 13: 228. PMID 24373163 DOI: 10.1186/1471-2229-13-228  0.644
2013 Zhang J, Xu E, Chen X. Regulation of Mdm2 mRNA stability by RNA-binding protein RNPC1. Oncotarget. 4: 1121-2. PMID 23912475 DOI: 10.18632/Oncotarget.1185  0.319
2012 Chen S, Xu J, Liu C, Zhu Y, Nelson DR, Zhou S, Li C, Wang L, Guo X, Sun Y, Luo H, Li Y, Song J, Henrissat B, Levasseur A, ... ... Zhang J, et al. Genome sequence of the model medicinal mushroom Ganoderma lucidum. Nature Communications. 3: 913. PMID 22735441 DOI: 10.1038/Ncomms1923  0.366
2012 Xu E, Zhang J, Chen X. MDM2 expression is repressed by the RNA-binding protein RNPC1 via mRNA stability. Oncogene. 32: 2169-78. PMID 22710720 DOI: 10.1038/Onc.2012.238  0.318
2011 Zhang J, Chen X. Novel role of Wip1 in p53-mediated cell homeostasis under non-stress conditions. Cell Cycle (Georgetown, Tex.). 10: 3235. PMID 21946519 DOI: 10.4161/Cc.10.19.17128  0.34
2011 Lin X, Zhang J, Li Y, Luo H, Wu Q, Sun C, Song J, Li X, Wei J, Lu A, Qian Z, Khan IA, Chen S. Functional genomics of a living fossil tree, Ginkgo, based on next-generation sequencing technology. Physiologia Plantarum. 143: 207-18. PMID 21834857 DOI: 10.1111/J.1399-3054.2011.01500.X  0.36
2011 Zhang J, Cho SJ, Shu L, Yan W, Guerrero T, Kent M, Skorupski K, Chen H, Chen X. Translational repression of p53 by RNPC1, a p53 target overexpressed in lymphomas. Genes & Development. 25: 1528-43. PMID 21764855 DOI: 10.1101/Gad.2069311  0.305
2011 Scoumanne A, Cho SJ, Zhang J, Chen X. The cyclin-dependent kinase inhibitor p21 is regulated by RNA-binding protein PCBP4 via mRNA stability. Nucleic Acids Research. 39: 213-24. PMID 20817677 DOI: 10.1093/Nar/Gkq778  0.327
2010 Zhang J, Jun Cho S, Chen X. RNPC1, an RNA-binding protein and a target of the p53 family, regulates p63 expression through mRNA stability. Proceedings of the National Academy of Sciences of the United States of America. 107: 9614-9. PMID 20457941 DOI: 10.1073/Pnas.0912594107  0.307
2009 Scoumanne A, Zhang J, Chen X. PRMT5 is required for cell-cycle progression and p53 tumor suppressor function Nucleic Acids Research. 37: 4965-4976. PMID 19528079 DOI: 10.1093/Nar/Gkp516  0.331
2009 Zhang J, Chen X, Kent MS, Rodriguez CO, Chen X. Establishment of a dog model for the p53 family pathway and identification of a novel isoform of p21 cyclin-dependent kinase inhibitor. Molecular Cancer Research : McR. 7: 67-78. PMID 19147538 DOI: 10.1158/1541-7786.Mcr-08-0347  0.327
2008 Zhang J, Chen X. Posttranscriptional regulation of p53 and its targets by RNA-binding proteins. Current Molecular Medicine. 8: 845-9. PMID 19075680 DOI: 10.2174/156652408786733748  0.332
2008 Helton ES, Zhang J, Chen X. The proline-rich domain in p63 is necessary for the transcriptional and apoptosis-inducing activities of TAp63. Oncogene. 27: 2843-50. PMID 18037962 DOI: 10.1038/Sj.Onc.1210948  0.338
2008 Qian Y, Zhang J, Yan B, Chen X. DEC1, a basic helix-loop-helix transcription factor and a novel target gene of the p53 family, mediates p53-dependent premature senescence. The Journal of Biological Chemistry. 283: 2896-905. PMID 18025081 DOI: 10.1074/Jbc.M708624200  0.321
2007 Xu Y, Zhang J, Chen X. The activity of p53 is differentially regulated by Brm- and Brg1-containing SWI/SNF chromatin remodeling complexes. The Journal of Biological Chemistry. 282: 37429-35. PMID 17938176 DOI: 10.1074/Jbc.M706039200  0.313
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