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Jieming Chen - Publications

Affiliations: 
Yale University, New Haven, CT 
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25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Bian C, Huang Y, Li R, Xu P, You X, Lv Y, Ruan Z, Chen J, Xu J, Shi Q. Genomics comparisons of three chromosome-level mudskipper genome assemblies reveal molecular clues for water-to-land evolution and adaptation. Journal of Advanced Research. PMID 37220853 DOI: 10.1016/j.jare.2023.05.005  0.31
2022 Zhao X, Huang Y, Bian C, You X, Zhang X, Chen J, Wang M, Hu C, Xu Y, Xu J, Shi Q. Whole genome sequencing of the fast-swimming Southern bluefin tuna (). Frontiers in Genetics. 13: 1020017. PMID 36406129 DOI: 10.3389/fgene.2022.1020017  0.408
2021 Gao Z, You X, Zhang X, Chen J, Xu T, Huang Y, Lin X, Xu J, Bian C, Shi Q. A chromosome-level genome assembly of the striped catfish (Pangasianodon hypophthalmus). Genomics. PMID 34343676 DOI: 10.1016/j.ygeno.2021.07.026  0.382
2021 Xu P, Zhao C, You X, Yang F, Chen J, Ruan Z, Gu R, Xu J, Bian C, Shi Q. Draft Genome of the Mirrorwing Flyingfish (). Frontiers in Genetics. 12: 695700. PMID 34306036 DOI: 10.3389/fgene.2021.695700  0.33
2021 Peng C, Huang Y, Bian C, Li J, Liu J, Zhang K, You X, Lin Z, He Y, Chen J, Lv Y, Ruan Z, Zhang X, Yi Y, Li Y, ... ... Chen JS, et al. The first Conus genome assembly reveals a primary genetic central dogma of conopeptides in C. betulinus. Cell Discovery. 7: 11. PMID 33619264 DOI: 10.1038/s41421-021-00244-7  0.385
2020 Chen J, Madireddi S, Nagarkar D, Migdal M, Vander Heiden J, Chang D, Mukhyala K, Selvaraj S, Kadel EE, Brauer MJ, Mariathasan S, Hunkapiller J, Jhunjhunwala S, Albert ML, Hammer C. In silico tools for accurate HLA and KIR inference from clinical sequencing data empower immunogenetics on individual-patient and population scales. Briefings in Bioinformatics. PMID 32940337 DOI: 10.1093/Bib/Bbaa223  0.347
2018 Jiang W, Qiu Y, Pan X, Zhang Y, Wang X, Lv Y, Bian C, Li J, You X, Chen J, Yang K, Yang J, Sun C, Liu Q, Cheng L, et al. Genome Assembly for a Yunnan-Guizhou Plateau "3E" Fish, (Regan), and Its Evolutionary and Genetic Applications. Frontiers in Genetics. 9: 614. PMID 30564274 DOI: 10.3389/fgene.2018.00614  0.35
2017 Lin Q, Qiu Y, Gu R, Xu M, Li J, Bian C, Zhang H, Qin G, Zhang Y, Luo W, Chen J, You X, Fan M, Sun M, Xu P, et al. Draft genome of the lined seahorse, Hippocampus erectus. Gigascience. PMID 28444302 DOI: 10.1093/gigascience/gix030  0.345
2017 Liu K, Xu D, Li J, Bian C, Duan J, Zhou Y, Zhang M, You X, You Y, Chen J, Yu H, Xu G, Fang DA, Qiang J, Jiang S, et al. Whole genome sequencing of Chinese clearhead icefish, Protosalanx hyalocranius. Gigascience. PMID 28327943 DOI: 10.1093/gigascience/giw012  0.353
2016 Yi Y, Zhang K, Chen J, Ruan Z, You X, Shi Q. The complete mitochondrial genome sequence of the giant mudskipper, (Perciformes: gobiidae). Mitochondrial Dna. Part B, Resources. 1: 599-600. PMID 33490412 DOI: 10.1080/23802359.2016.1202742  0.316
2016 Chen J, Wang B, Regan L, Gerstein M. Intensification: A resource for amplifying population-genetic signals with protein repeats. Journal of Molecular Biology. PMID 27939289 DOI: 10.1016/J.Jmb.2016.12.003  0.623
2016 Bian C, Hu Y, Ravi V, Kuznetsova IS, Shen X, Mu X, Sun Y, You X, Li J, Li X, Qiu Y, Tay BH, Thevasagayam NM, Komissarov AS, Trifonov V, ... ... Chen J, et al. The Asian arowana (Scleropages formosus) genome provides new insights into the evolution of an early lineage of teleosts. Scientific Reports. 6: 24501. PMID 27089831 DOI: 10.1038/Srep24501  0.328
2016 Chen J, Rozowsky J, Galeev TR, Harmanci A, Kitchen R, Bedford J, Abyzov A, Kong Y, Regan L, Gerstein M. A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals. Nature Communications. 7: 11101. PMID 27089393 DOI: 10.1038/Ncomms11101  0.627
2016 Clarke D, Sethi A, Li S, Kumar S, Chang RW, Chen J, Gerstein M. Identifying Allosteric Hotspots with Dynamics: Application to Inter- and Intra-species Conservation. Structure (London, England : 1993). PMID 27066750 DOI: 10.1016/J.Str.2016.03.008  0.523
2015 Sethi A, Clarke D, Chen J, Kumar S, Galeev TR, Regan L, Gerstein M. Reads meet rotamers: structural biology in the age of deep sequencing. Current Opinion in Structural Biology. 35: 125-134. PMID 26658741 DOI: 10.1016/J.Sbi.2015.11.003  0.621
2015 Sudmant PH, Rausch T, Gardner EJ, Handsaker RE, Abyzov A, Huddleston J, Zhang Y, Ye K, Jun G, Hsi-Yang Fritz M, Konkel MK, Malhotra A, Stütz AM, Shi X, Paolo Casale F, ... Chen J, et al. An integrated map of structural variation in 2,504 human genomes. Nature. 526: 75-81. PMID 26432246 DOI: 10.1038/Nature15394  0.649
2014 You X, Bian C, Zan Q, Xu X, Liu X, Chen J, Wang J, Qiu Y, Li W, Zhang X, Sun Y, Chen S, Hong W, Li Y, Cheng S, et al. Mudskipper genomes provide insights into the terrestrial adaptation of amphibious fishes. Nature Communications. 5: 5594. PMID 25463417 DOI: 10.1038/Ncomms6594  0.333
2013 Khurana E, Fu Y, Colonna V, Mu XJ, Kang HM, Lappalainen T, Sboner A, Lochovsky L, Chen J, Harmanci A, Das J, Abyzov A, Balasubramanian S, Beal K, Chakravarty D, et al. Integrative annotation of variants from 1092 humans: application to cancer genomics. Science (New York, N.Y.). 342: 1235587. PMID 24092746 DOI: 10.1126/Science.1235587  0.632
2013 Khurana E, Fu Y, Chen J, Gerstein M. Interpretation of Genomic Variants Using a Unified Biological Network Approach Plos Computational Biology. 9. PMID 23505346 DOI: 10.1371/Journal.Pcbi.1002886  0.556
2013 Sawyer N, Chen J, Regan L. All repeats are not equal: a module-based approach to guide repeat protein design. Journal of Molecular Biology. 425: 1826-38. PMID 23434848 DOI: 10.1016/J.Jmb.2013.02.013  0.517
2013 Chen J, Sawyer N, Regan L. Protein-protein interactions: general trends in the relationship between binding affinity and interfacial buried surface area. Protein Science : a Publication of the Protein Society. 22: 510-5. PMID 23389845 DOI: 10.1002/Pro.2230  0.443
2012 Zilberman-Schapira G, Chen J, Gerstein M. On Sports and Genes Recent Patents On Dna and Gene Sequences. 6: 180-188. PMID 22762737 DOI: 10.2174/187221512802717367  0.501
2012 Suo C, Xu H, Khor CC, Ong RT, Sim X, Chen J, Tay WT, Sim KS, Zeng YX, Zhang X, Liu J, Tai ES, Wong TY, Chia KS, Teo YY. Natural positive selection and north-south genetic diversity in East Asia. European Journal of Human Genetics : Ejhg. 20: 102-10. PMID 21792231 DOI: 10.1038/Ejhg.2011.139  0.402
2010 Chen J, Zheng H, Bei JX, Sun L, Jia WH, Li T, Zhang F, Seielstad M, Zeng YX, Zhang X, Liu J. Genetic structure of the Han Chinese population revealed by genome-wide SNP variation. American Journal of Human Genetics. 85: 775-85. PMID 19944401 DOI: 10.1016/j.ajhg.2009.10.016  0.376
2009 Teo YY, Sim X, Ong RT, Tan AK, Chen J, Tantoso E, Small KS, Ku CS, Lee EJ, Seielstad M, Chia KS. Singapore Genome Variation Project: a haplotype map of three Southeast Asian populations. Genome Research. 19: 2154-62. PMID 19700652 DOI: 10.1101/gr.095000.109  0.423
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