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John D. Fisk, Ph.D. - Publications

Affiliations: 
2004 University of Wisconsin, Madison, Madison, WI 
Area:
biologically active polymers
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26 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Tittle JM, Schwark DG, Biddle W, Schmitt MA, Fisk JD. Impact of queuosine modification of endogenous tRNAs on sense codon reassignment. Frontiers in Molecular Biosciences. 9: 938114. PMID 36120552 DOI: 10.3389/fmolb.2022.938114  0.665
2022 Biddle W, Schwark DG, Schmitt MA, Fisk JD. Directed Evolution Pipeline for the Improvement of Orthogonal Translation Machinery for Genetic Code Expansion at Sense Codons. Frontiers in Chemistry. 10: 815788. PMID 35252113 DOI: 10.3389/fchem.2022.815788  0.678
2021 Schwark DG, Schmitt MA, Fisk JD. Directed Evolution of the Pyrrolysyl tRNA/aminoacyl tRNA Synthetase Pair for Rapid Evaluation of Sense Codon Reassignment Potential. International Journal of Molecular Sciences. 22. PMID 33477414 DOI: 10.3390/ijms22020895  0.682
2020 Schwark DG, Schmitt MA, Biddle W, Fisk JD. The Influence of Competing tRNA Abundance on Translation: Quantifying the Efficiency of Sense Codon Reassignment at Rarely Used Codons. Chembiochem : a European Journal of Chemical Biology. PMID 32203635 DOI: 10.1002/Cbic.202000052  0.689
2018 Schwark DG, Schmitt MA, Fisk JD. Dissecting the Contribution of Release Factor Interactions to Amber Stop Codon Reassignment Efficiencies of the Orthogonal Pair. Genes. 9. PMID 30424562 DOI: 10.3390/Genes9110546  0.684
2018 Schmitt MA, Biddle W, Fisk JD. Mapping the Plasticity of the E. coli Genetic Code with Orthogonal Pair Directed Sense Codon Reassignment. Biochemistry. PMID 29668270 DOI: 10.1021/Acs.Biochem.8B00177  0.695
2017 Zhao N, Spencer J, Schmitt MA, Fisk JD. Hyperthermostable binding molecules on phage: Assay components for point-of-care diagnostics for active tuberculosis infection. Analytical Biochemistry. PMID 28062210 DOI: 10.1016/J.Ab.2016.12.021  0.64
2016 Biddle W, Schmitt MA, Fisk JD. Modification of orthogonal tRNAs: unexpected consequences for sense codon reassignment. Nucleic Acids Research. 44: 10042-10050. PMID 27915288 DOI: 10.1093/Nar/Gkw948  0.685
2016 Smeal SW, Schmitt MA, Pereira RR, Prasad A, Fisk JD. Simulation of the M13 life cycle I: Assembly of a genetically-structured deterministic chemical kinetic simulation. Virology. PMID 27644585 DOI: 10.1016/J.Virol.2016.08.017  0.654
2016 Smeal SW, Schmitt MA, Pereira RR, Prasad A, Fisk JD. Simulation of the M13 life cycle II: Investigation of the control mechanisms of M13 infection and establishment of the carrier state. Virology. PMID 27569186 DOI: 10.1016/J.Virol.2016.08.015  0.65
2016 Zhao N, Schmitt MA, Fisk JD. Phage Display Selection of Tight Specific Binding Variants from a Hyperthermostable Sso7d Scaffold Protein Library. The Febs Journal. PMID 26835881 DOI: 10.1111/Febs.13674  0.663
2015 Biddle W, Schmitt MA, Fisk JD. Evaluating Sense Codon Reassignment with a Simple Fluorescence Screen. Biochemistry. PMID 26536053 DOI: 10.1021/Acs.Biochem.5B00870  0.695
2011 Freire F, Almeida AM, Fisk JD, Steinkruger JD, Gellman SH. Impact of strand length on the stability of parallel-β-sheet secondary structure. Angewandte Chemie (International Ed. in English). 50: 8735-8. PMID 21812082 DOI: 10.1002/Anie.201102986  0.747
2011 Van Deventer JA, Fisk JD, Tirrell DA. Homoisoleucine: a translationally active leucine surrogate of expanded hydrophobic surface area. Chembiochem : a European Journal of Chemical Biology. 12: 700-2. PMID 21404412 DOI: 10.1002/Cbic.201000731  0.366
2008 Freire F, Fisk JD, Peoples AJ, Ivancic M, Guzei IA, Gellman SH. Diacid linkers that promote parallel beta-sheet secondary structure in water. Journal of the American Chemical Society. 130: 7839-41. PMID 18507461 DOI: 10.1021/Ja802042C  0.595
2006 Fisk JD, Schmitt MA, Gellman SH. Thermodynamic analysis of autonomous parallel beta-sheet formation in water. Journal of the American Chemical Society. 128: 7148-9. PMID 16734453 DOI: 10.1021/Ja060942P  0.749
2004 Lai JR, Fisk JD, Weisblum B, Gellman SH. Hydrophobic core repacking in a coiled-coil dimer via phage display: insights into plasticity and specificity at a protein-protein interface. Journal of the American Chemical Society. 126: 10514-5. PMID 15327289 DOI: 10.1021/Ja047710F  0.683
2003 Huck BR, Fisk JD, Guzei IA, Carlson HA, Gellman SH. Secondary structural preferences of 2,2-disubstituted pyrrolidine-4-carboxylic acid oligomers: beta-peptide foldamers that cannot form internal hydrogen bonds. Journal of the American Chemical Society. 125: 9035-7. PMID 15369358 DOI: 10.1021/Ja034561C  0.771
2003 Syud FA, Stanger HE, Mortell HS, Espinosa JF, Fisk JD, Fry CG, Gellman SH. Influence of strand number on antiparallel beta-sheet stability in designed three- and four-stranded beta-sheets. Journal of Molecular Biology. 326: 553-68. PMID 12559922 DOI: 10.1016/S0022-2836(02)01304-9  0.783
2003 Syud FA, Stanger HE, Schenck Mortell H, Espinosa JF, Fisk JD, Fry CG, Gellman SH. Corrigendum to “Influence of Strand Number on Antiparallel β-Sheet Stability in Designed Three- and Four-Stranded β-Sheets” Journal of Molecular Biology. 328: 303. DOI: 10.1016/S0022-2836(03)00303-6  0.743
2002 Woll MG, Fisk JD, LePlae PR, Gellman SH. Stereoselective synthesis of 3-substituted 2-aminocyclopentanecarboxylic acid derivatives and their incorporation into short 12-helical beta-peptides that fold in water. Journal of the American Chemical Society. 124: 12447-52. PMID 12381185 DOI: 10.1021/Ja0258778  0.743
2002 LePlae PR, Fisk JD, Porter EA, Weisblum B, Gellman SH. Tolerance of acyclic residues in the beta-peptide 12-helix: access to diverse side-chain arrays for biological applications. Journal of the American Chemical Society. 124: 6820-1. PMID 12059191 DOI: 10.1021/Ja017869H  0.757
2001 Langenhan JM, Fisk JD, Gellman SH. Evaluation of hydrogen bonding complementarity between a secondary sulfonamide and an alpha-amino acid residue. Organic Letters. 3: 2559-62. PMID 11483060 DOI: 10.1021/Ol016237X  0.761
2001 Fisk JD, Gellman SH. A parallel beta-sheet model system that folds in water. Journal of the American Chemical Society. 123: 343-4. PMID 11456526 DOI: 10.1021/Ja002493D  0.527
2000 Huck BR, Fisk JD, Gellman SH. Promotion of sheet formation in alpha-peptide strands by a beta-peptide reverse turn. Organic Letters. 2: 2607-10. PMID 10990408 DOI: 10.1021/Ol006120T  0.792
2000 Fisk JD, Powell DR, Gellman SH. Control of hairpin formation via proline configuration in parallel β- sheet model systems Journal of the American Chemical Society. 122: 5443-5447. DOI: 10.1021/Ja9929483  0.558
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