Paul Keim - Publications

Affiliations: 
Northern Arizona University, Flagstaff, AZ, United States 
Area:
Microbiology Biology, Genetics, Epidemiology

380 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Smith TJ, Williamson CHD, Hill KK, Johnson SL, Xie G, Anniballi F, Auricchio B, Fernández RA, Caballero PA, Keim P, Sahl JW. The Distinctive Evolution of Strains and Their Botulinum Neurotoxin Type A and F Gene Clusters Is Influenced by Environmental Factors and Gene Interactions via Mobile Genetic Elements. Frontiers in Microbiology. 12: 566908. PMID 33716993 DOI: 10.3389/fmicb.2021.566908  0.52
2021 Baker SM, Settles EW, Davitt C, Gellings P, Kikendall N, Hoffmann J, Wang Y, Bitoun J, Lodrigue KR, Sahl JW, Keim P, Roy C, McLachlan J, Morici LA. Burkholderia pseudomallei OMVs derived from infection mimicking conditions elicit similar protection to a live-attenuated vaccine. Npj Vaccines. 6: 18. PMID 33514749 DOI: 10.1038/s41541-021-00281-z  0.52
2021 Stone NE, Jaramillo SA, Jones AN, Vazquez AJ, Martz M, Versluis LM, Raniere MO, Nunnally HE, Zarn KE, Nottingham R, Ng KR, Sahl JW, Wagner DM, Knudsen S, Settles EW, ... Keim P, et al. Stenoparib, an Inhibitor of Cellular Poly(ADP-Ribose) Polymerase, Blocks Replication of the SARS-CoV-2 and HCoV-NL63 Human Coronaviruses . Mbio. 12. PMID 33468703 DOI: 10.1128/mBio.03495-20  0.68
2021 Miller E, Barragan V, Chiriboga J, Weddell C, Luna L, Jiménez DJ, Aleman J, Mihaljevic JR, Olivas S, Marks J, Izurieta R, Nieto N, Keim P, Trueba G, Caporaso JG, et al. Leptospira in river and soil in a highly endemic area of Ecuador. Bmc Microbiology. 21: 17. PMID 33413126 DOI: 10.1186/s12866-020-02069-y  0.96
2020 Bolyen E, Dillon MR, Bokulich NA, Ladner JT, Larsen BB, Hepp CM, Lemmer D, Sahl JW, Sanchez A, Holdgraf C, Sewell C, Choudhury AG, Stachurski J, McKay M, Engelthaler DM, ... ... Keim P, et al. Reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity. F1000research. 9: 657. PMID 33500774 DOI: 10.12688/F1000Research.24751.1  0.64
2020 Mead HL, Hamm PS, Shaffer IN, Teixeira MM, Wendel CS, Wiederhold NP, Thompson GR, Muñiz-Salazar R, Castañón-Olivares LR, Keim P, Plude C, Terriquez J, Galgiani JN, Orbach MJ, Barker BM. Differential Thermotolerance Adaptation between Species of . Journal of Fungi (Basel, Switzerland). 6. PMID 33327629 DOI: 10.3390/jof6040366  0.32
2020 Somprasong N, Hall CM, Webb JR, Sahl JW, Wagner DM, Keim P, Currie BJ, Schweizer HP. high-level tetracycline resistance is due to efflux pump synergy involving a novel TetA(64) resistance determinant. Antimicrobial Agents and Chemotherapy. PMID 33318011 DOI: 10.1128/AAC.01767-20  0.68
2020 Martínez Arbas S, Narayanasamy S, Herold M, Lebrun LA, Hoopmann MR, Li S, Lam TJ, Kunath BJ, Hicks ND, Liu CM, Price LB, Laczny CC, Gillece JD, Schupp JM, Keim PS, et al. Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics. Nature Microbiology. PMID 33139880 DOI: 10.1038/s41564-020-00794-8  0.56
2020 Herold M, Martínez Arbas S, Narayanasamy S, Sheik AR, Kleine-Borgmann LAK, Lebrun LA, Kunath BJ, Roume H, Bessarab I, Williams RBH, Gillece JD, Schupp JM, Keim PS, Jäger C, Hoopmann MR, et al. Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance. Nature Communications. 11: 5281. PMID 33077707 DOI: 10.1038/s41467-020-19006-2  0.52
2020 Ladner JT, Larsen BB, Bowers JR, Hepp CM, Bolyen E, Folkerts M, Sheridan K, Pfeiffer A, Yaglom H, Lemmer D, Sahl JW, Kaelin EA, Maqsood R, Bokulich NA, Quirk G, ... ... Keim P, et al. An Early Pandemic Analysis of SARS-CoV-2 Population Structure and Dynamics in Arizona. Mbio. 11. PMID 32887735 DOI: 10.1128/Mbio.02107-20  0.64
2020 Somprasong N, Hall CM, Webb JR, Sahl JW, Wagner DM, Keim P, Currie BJ, Schweizer HP. Burkholderia ubonensis Meropenem Resistance: Insights into Distinct Properties of Class A β-Lactamases in Burkholderia cepacia Complex and Burkholderia pseudomallei Complex Bacteria. Mbio. 11. PMID 32291300 DOI: 10.1128/Mbio.00592-20  0.68
2020 Biggs TD, Karavis MA, Harris JV, Hill JM, Bernhards RC, Price LB, Keim P, Goodwin BG, Sozhamannan S. Draft Whole-Genome Sequences of Ciprofloxacin-Resistant Derivatives of a Bacillus anthracis ΔANR Strain Lacking pXO1 and pXO2 Plasmids. Microbiology Resource Announcements. 9. PMID 32273351 DOI: 10.1128/MRA.00056-20  0.52
2020 Pearson T, Sahl JW, Hepp CM, Handady K, Hornstra H, Vazquez AJ, Settles E, Mayo M, Kaestli M, Williamson CHD, Price EP, Sarovich DS, Cook JM, Wolken SR, Bowen RA, ... ... Keim P, et al. Pathogen to commensal? Longitudinal within-host population dynamics, evolution, and adaptation during a chronic >16-year Burkholderia pseudomallei infection. Plos Pathogens. 16: e1008298. PMID 32134991 DOI: 10.1371/Journal.Ppat.1008298  0.96
2020 Smith TJ, Xie G, Williamson CHD, Hill KK, Sahl JW, Keim P, Johnson SL. Genomic characterization of newly completed genomes of botulinum neurotoxin-producing species from Argentina, Australia and Africa. Genome Biology and Evolution. PMID 32108238 DOI: 10.1093/Gbe/Evaa043  0.52
2020 Teixeira MM, Muszewska A, Travis J, Moreno LF, Ahmed S, Roe C, Mead H, Steczkiewicz K, Lemmer D, de Hoog S, Keim P, Wiederhold N, Barker BM. Genomic characterization of Parengyodontium americanum sp. Nov. Fungal Genetics and Biology : Fg & B. 103351. PMID 32028048 DOI: 10.1016/J.Fgb.2020.103351  0.52
2019 Jimenez VM, Settles EW, Currie BJ, Keim PS, Monroy FP. Persistence of Burkholderia thailandensis E264 in lung tissue after a single binge alcohol episode. Plos One. 14: e0218147. PMID 31821337 DOI: 10.1371/journal.pone.0218147  0.32
2019 Teixeira MM, Alvarado P, Roe CC, Thompson GR, Patané JSL, Sahl JW, Keim P, Galgiani JN, Litvintseva AP, Matute DR, Barker BM. Population Structure and Genetic Diversity among Isolates of in Venezuela and Surrounding Regions. Mbio. 10. PMID 31772050 DOI: 10.1128/Mbio.01976-19  0.56
2019 Hall CM, Jaramillo S, Jimenez R, Stone NE, Centner H, Busch JD, Bratsch N, Roe CC, Gee JE, Hoffmaster AR, Rivera-Garcia S, Soltero F, Ryff K, Perez-Padilla J, Keim P, et al. Burkholderia pseudomallei, the causative agent of melioidosis, is rare but ecologically established and widely dispersed in the environment in Puerto Rico. Plos Neglected Tropical Diseases. 13: e0007727. PMID 31487287 DOI: 10.1371/Journal.Pntd.0007727  0.68
2019 Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, ... ... Keim P, et al. Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nature Biotechnology. PMID 31399723 DOI: 10.1038/S41587-019-0252-6  0.96
2019 Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, ... ... Keim P, et al. Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nature Biotechnology. PMID 31341288 DOI: 10.1038/S41587-019-0209-9  0.96
2019 Williamson CHD, Stone NE, Nunnally AE, Hornstra HM, Wagner DM, Roe CC, Vazquez AJ, Nandurkar N, Vinocur J, Terriquez J, Gillece J, Travis J, Lemmer D, Keim P, Sahl JW. A global to local genomics analysis of Clostridioides difficile ST1/RT027 identifies cryptic transmission events in a northern Arizona healthcare network. Microbial Genomics. PMID 31107202 DOI: 10.1099/mgen.0.000271  0.96
2019 Birdsell DN, Yaglom H, Rodriguez E, Engelthaler DM, Maurer M, Gaither M, Vinocur J, Weiss J, Terriquez J, Komatsu K, Ormsby ME, Gebhardt M, Solomon C, Nienstadt L, Williamson CHD, ... ... Keim PS, et al. Phylogenetic Analysis of Francisella tularensis Group A.II Isolates from 5 Patients with Tularemia, Arizona, USA, 2015-2017. Emerging Infectious Diseases. 25: 944-946. PMID 31002053 DOI: 10.3201/Eid2505.180363  0.68
2019 Stone NE, Nunnally AE, Jimenez V, Cope EK, Sahl JW, Sheridan K, Hornstra HM, Vinocur J, Settles EW, Headley KC, Williamson CHD, Rideout JR, Bolyen E, Caporaso JG, Terriquez J, ... ... Keim P, et al. Domestic canines do not display evidence of gut microbial dysbiosis in the presence of Clostridioides (Clostridium) difficile, despite cellular susceptibility to its toxins. Anaerobe. PMID 30946985 DOI: 10.1016/J.Anaerobe.2019.03.017  0.96
2019 Yi J, Simpanya MF, Settles EW, Shannon AB, Hernandez K, Pristo L, Keener ME, Hornstra H, Busch JD, Soffler C, Brett PJ, Currie BJ, Bowen RA, Tuanyok A, Keim P. Caprine humoral response to Burkholderia pseudomallei antigens during acute melioidosis from aerosol exposure. Plos Neglected Tropical Diseases. 13: e0006851. PMID 30811382 DOI: 10.1371/journal.pntd.0006851  0.52
2019 Bowers JR, Valentine M, Harrison V, Fofanov VY, Gillece J, Delisle J, Patton B, Schupp J, Sheridan K, Lemmer D, Ostdiek S, Bains HK, Heim J, Sylvester T, Prasai S, ... ... Keim P, et al. Genomic Analyses of Acute Flaccid Myelitis Cases among a Cluster in Arizona Provide Further Evidence of Enterovirus D68 Role. Mbio. 10. PMID 30670612 DOI: 10.1128/Mbio.02262-18  0.64
2019 Vogler AJ, Sahl JW, Leal NC, Sobreira M, Williamson CHD, Bollig MC, Birdsell DN, Rivera A, Thompson B, Nottingham R, Rezende AM, Keim P, Almeida AMP, Wagner DM. A single introduction of Yersinia pestis to Brazil during the 3rd plague pandemic. Plos One. 14: e0209478. PMID 30625164 DOI: 10.1371/Journal.Pone.0209478  0.68
2018 Jimenez V, Moreno R, Settles E, Currie BJ, Keim P, Monroy FP. A mouse model of binge alcohol consumption and Burkholderia infection. Plos One. 13: e0208061. PMID 30485380 DOI: 10.1371/journal.pone.0208061  0.32
2018 Hepp CM, Cocking JH, Valentine M, Young SJ, Damian D, Samuels-Crow KE, Sheridan K, Fofanov VY, Furstenau TN, Busch JD, Erickson DE, Lancione RC, Smith K, Will J, Townsend J, ... Keim PS, et al. Phylogenetic analysis of West Nile Virus in Maricopa County, Arizona: Evidence for dynamic behavior of strains in two major lineages in the American Southwest. Plos One. 13: e0205801. PMID 30475820 DOI: 10.1371/Journal.Pone.0205801  0.96
2018 Baker AL, Pearson T, Sahl JW, Hepp C, Price EP, Sarovich DS, Mayo M, Tuanyok A, Currie BJ, Keim P, Warner J. Burkholderia pseudomallei distribution in Australasia is linked to paleogeographic and anthropogenic history. Plos One. 13: e0206845. PMID 30395628 DOI: 10.1371/Journal.Pone.0206845  0.96
2018 Boehmer T, Vogler AJ, Thomas A, Sauer S, Hergenroether M, Straubinger RK, Birdsell D, Keim P, Sahl JW, Williamson CHD, Riehm JM. Phenotypic characterization and whole genome analysis of extended-spectrum beta-lactamase-producing bacteria isolated from dogs in Germany. Plos One. 13: e0206252. PMID 30365516 DOI: 10.1371/Journal.Pone.0206252  0.68
2018 Deatherage Kaiser BL, Hill KK, Smith TJ, Williamson CHD, Keim P, Sahl JW, Wahl KL. Proteomic analysis of four Clostridium botulinum strains identifies proteins that link biological responses to proteomic signatures. Plos One. 13: e0205586. PMID 30321210 DOI: 10.1371/journal.pone.0205586  0.52
2018 Liu CM, Stegger M, Aziz M, Johnson TJ, Waits K, Nordstrom L, Gauld L, Weaver B, Rolland D, Statham S, Horwinski J, Sariya S, Davis GS, Sokurenko E, Keim P, et al. Escherichia coli ST131-22 as a Foodborne Uropathogen. Mbio. 9. PMID 30154256 DOI: 10.1128/Mbio.00470-18  0.56
2018 Beck L, Coates SG, Gee J, Hadfield T, Jackson P, Keim P, Lindler L, Olson V, Ostlund E, Roberto F, Samuel J, Sharma S, Tallent S, Wagner DM. Performance Standards for Biological Threat Agent Assays for Department of Defense Applications. Journal of Aoac International. PMID 30135000 DOI: 10.5740/Jaoacint.Spada_Ss  0.68
2018 Enger KS, Mitchell J, Murali B, Birdsell DN, Keim P, Gurian PL, Wagner DM. Evaluating the long-term persistence of Bacillus spores on common surfaces. Microbial Biotechnology. PMID 29726106 DOI: 10.1111/1751-7915.13267  0.68
2018 Bowers JR, Driebe EM, Albrecht V, McDougal LK, Granade M, Roe CC, Lemmer D, Rasheed JK, Engelthaler DM, Keim P, Limbago BM. Improved Subtyping of Staphylococcus aureus Clonal Complex 8 Strains Based on Whole-Genome Phylogenetic Analysis. Msphere. 3. PMID 29720527 DOI: 10.1128/mSphere.00464-17  0.64
2018 Williamson CHD, Wagner DM, Keim P, Sahl JW. Developing Inclusivity and Exclusivity Panels for Testing Diagnostic and Detection Tools Targeting , the Causative Agent of Melioidosis. Journal of Aoac International. PMID 29678218 DOI: 10.5740/jaoacint.18-0014  0.68
2018 Sahl JW, Mayo M, Price EP, Sarovich DS, Kaestli M, Pearson T, Williamson CHD, Nottingham R, Sheridan K, Wagner DM, Currie BJ, Keim P. Complete Genome Sequence of the Environmental Burkholderia pseudomallei Sequence Type 131 Isolate MSHR1435, Associated with a Chronic Melioidosis Infection. Genome Announcements. 6. PMID 29545292 DOI: 10.1128/genomeA.00072-18  0.96
2017 Foster JT, Walker FM, Rannals BD, Hussain MH, Drees KP, Tiller RV, Hoffmaster AR, Al-Rawahi A, Keim P, Saqib M. African Lineage Brucella melitensis Isolates from Omani Livestock. Frontiers in Microbiology. 8: 2702. PMID 29379492 DOI: 10.3389/fmicb.2017.02702  0.52
2017 Drees KP, Lorch JM, Puechmaille SJ, Parise KL, Wibbelt G, Hoyt JR, Sun K, Jargalsaikhan A, Dalannast M, Palmer JM, Lindner DL, Marm Kilpatrick A, Pearson T, Keim PS, Blehert DS, et al. Phylogenetics of a Fungal Invasion: Origins and Widespread Dispersal of White-Nose Syndrome. Mbio. 8. PMID 29233897 DOI: 10.1128/Mbio.01941-17  0.96
2017 Mitchell CL, Andrianaivoarimanana V, Colman RE, Busch J, Hornstra-O'Neill H, Keim PS, Wagner DM, Rajerison M, Birdsell DN. Low cost, low tech SNP genotyping tools for resource-limited areas: Plague in Madagascar as a model. Plos Neglected Tropical Diseases. 11: e0006077. PMID 29227994 DOI: 10.1371/Journal.Pntd.0006077  0.68
2017 Muller EEL, Narayanasamy S, Zeimes M, Laczny CC, Lebrun LA, Herold M, Hicks ND, Gillece JD, Schupp JM, Keim P, Wilmes P. First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ. Standards in Genomic Sciences. 12: 64. PMID 29075368 DOI: 10.1186/S40793-017-0274-Y  0.52
2017 Jimenez V, Moreno R, Kaufman E, Hornstra H, Settles E, Currie BJ, Keim P, Monroy FP. Effects of binge alcohol exposure on Burkholderia thailandensis-alveolar macrophage interaction. Alcohol (Fayetteville, N.Y.). 64: 55-63. PMID 28965656 DOI: 10.1016/j.alcohol.2017.04.004  0.52
2017 Price EP, Sarovich DS, Webb JR, Hall CM, Jaramillo SA, Sahl JW, Kaestli M, Mayo M, Harrington G, Baker AL, Sidak-Loftis LC, Settles EW, Lummis M, Schupp JM, Gillece JD, ... ... Keim P, et al. Phylogeographic, genomic, and meropenem susceptibility analysis of Burkholderia ubonensis. Plos Neglected Tropical Diseases. 11: e0005928. PMID 28910350 DOI: 10.1371/Journal.Pntd.0005928  0.68
2017 Podnecky NL, Rhodes KA, Mima T, Drew HR, Chirakul S, Wuthiekanun V, Schupp JM, Sarovich DS, Currie BJ, Keim P, Schweizer HP. Mechanisms of Resistance to Folate Pathway Inhibitors in Burkholderia pseudomallei: Deviation from the Norm. Mbio. 8. PMID 28874476 DOI: 10.1128/Mbio.01357-17  0.52
2017 Vogler AJ, Andrianaivoarimanana V, Telfer S, Hall CM, Sahl JW, Hepp CM, Centner H, Andersen G, Birdsell DN, Rahalison L, Nottingham R, Keim P, Wagner DM, Rajerison M. Temporal phylogeography of Yersinia pestis in Madagascar: Insights into the long-term maintenance of plague. Plos Neglected Tropical Diseases. 11: e0005887. PMID 28873412 DOI: 10.1371/Journal.Pntd.0005887  0.68
2017 Merkley ED, Sego LH, Lin A, Leiser OP, Kaiser BLD, Adkins JN, Keim PS, Wagner DM, Kreuzer HW. Protein abundances can distinguish between naturally-occurring and laboratory strains of Yersinia pestis, the causative agent of plague. Plos One. 12: e0183478. PMID 28854255 DOI: 10.1371/Journal.Pone.0183478  0.68
2017 Gee J, Arce J, Beck LC, Blank TR, Blyn L, Cahall R, Clark AJ, Currie B, Damer K, Davenport M, DeShazer D, Johns M, Keim PS, Kiss K, Lesho M, et al. AOAC SMPR 2016.010. Journal of Aoac International. 100: 261-265. PMID 28825553 DOI: 10.5740/Jaoacint.Smpr2016.010  0.32
2017 Barragan V, Olivas S, Keim P, Pearson T. Critical knowledge gaps in our understanding about environmental cycling and transmission of Leptospira. Applied and Environmental Microbiology. PMID 28754706 DOI: 10.1128/Aem.01190-17  0.96
2017 Williamson CHD, Vazquez AJ, Hill K, Smith TJ, Nottingham R, Stone NE, Sobek CJ, Cocking JH, Fernández RA, Caballero PA, Leiser OP, Keim P, Sahl JW. Differentiating botulinum-neurotoxin-producing clostridia with a simple, multiplex PCR assay. Applied and Environmental Microbiology. PMID 28733282 DOI: 10.1128/Aem.00806-17  0.96
2017 Venkateswaran K, Singh NK, Checinska Sielaff A, Pope RK, Bergman NH, van Tongeren SP, Patel NB, Lawson PA, Satomi M, Williamson CHD, Sahl JW, Keim P, Pierson D, Perry J. Non-Toxin-Producing Bacillus cereus Strains Belonging to the B. anthracis Clade Isolated from the International Space Station. Msystems. 2. PMID 28680972 DOI: 10.1128/mSystems.00021-17  0.52
2017 Lal D, Keim P, Delisle J, Barker B, Rank MA, Chia N, Schupp JM, Gillece JD, Cope EK. Mapping and comparing bacterial microbiota in the sinonasal cavity of healthy, allergic rhinitis, and chronic rhinosinusitis subjects. International Forum of Allergy & Rhinology. PMID 28481057 DOI: 10.1002/Alr.21934  0.52
2017 Drees KP, Parise KL, Rivas SM, Felton LL, Puechmaille SJ, Keim P, Foster JT. Characterization of Microsatellites in Pseudogymnoascus destructans for White-nose Syndrome Genetic Analysis. Journal of Wildlife Diseases. PMID 28475452 DOI: 10.7589/2016-09-217  0.32
2017 Barragan V, Nieto N, Keim P, Pearson T. Meta-analysis to estimate the load of Leptospira excreted in urine: beyond rats as important sources of transmission in low-income rural communities. Bmc Research Notes. 10: 71. PMID 28129788 DOI: 10.1186/S13104-017-2384-4  0.96
2017 Chewapreecha C, Holden MT, Vehkala M, Välimäki N, Yang Z, Harris SR, Mather AE, Tuanyok A, De Smet B, Le Hello S, Bizet C, Mayo M, Wuthiekanun V, Limmathurotsakul D, Phetsouvanh R, ... ... Keim P, et al. Global and regional dissemination and evolution of Burkholderia pseudomallei. Nature Microbiology. 2: 16263. PMID 28112723 DOI: 10.1038/Nmicrobiol.2016.263  0.32
2016 Sahl JW, Lemmer D, Travis J, Schupp JM, Gillece JD, Aziz M, Driebe EM, Drees KP, Hicks ND, Williamson CH, Hepp CM, Smith DE, Roe C, Engelthaler DM, Wagner DM, ... Keim P, et al. NASP: an accurate, rapid method for the identification of SNPs in WGS datasets that supports flexible input and output formats. Microbial Genomics. 2: e000074. PMID 28348869 DOI: 10.1099/mgen.0.000074  0.68
2016 Olivas S, Hornstra H, Priestley RA, Kaufman E, Hepp C, Sonderegger DL, Handady K, Massung RF, Keim P, Kersh GJ, Pearson T. Massive dispersal of Coxiella burnetii among cattle across the United States. Microbial Genomics. 2: e000068. PMID 28348863 DOI: 10.1099/mgen.0.000068  0.96
2016 Dwibedi C, Birdsell D, Lärkeryd A, Myrtennäs K, Öhrman C, Nilsson E, Karlsson E, Hochhalter C, Rivera A, Maltinsky S, Bayer B, Keim P, Scholz HC, Tomaso H, Wittwer M, et al. Long-range dispersal moved Francisella tularensis into Western Europe from the East. Microbial Genomics. 2: e000100. PMID 28348839 DOI: 10.1099/mgen.0.000100  0.68
2016 Roe CC, Horn KS, Driebe EM, Bowers J, Terriquez JA, Keim P, Engelthaler DM. Whole genome SNP typing to investigate methicillin-resistant Staphylococcus aureus carriage in a health-care provider as the source of multiple surgical site infections. Hereditas. 153: 11. PMID 28096773 DOI: 10.1186/S41065-016-0017-X  0.64
2016 Nualnoi T, Norris MH, Tuanyok A, Brett PJ, Burtnick MN, Keim PS, Settles EW, Allender CJ, AuCoin DP. Development Of Immunoassays For Burkholderia Pseudomallei Typical And Atypical Lipopolysaccharide Strain Typing. The American Journal of Tropical Medicine and Hygiene. PMID 27994103 DOI: 10.4269/ajtmh.16-0308  0.68
2016 Tuanyok A, Mayo M, Scholz H, Hall CM, Allender CJ, Kaestli M, Ginther J, Spring-Pearson S, Bollig MC, Stone JK, Settles EW, Busch JD, Sidak-Loftis L, Sahl JW, Thomas A, ... ... Keim P, et al. Burkholderia humptydooensis sp. nov., a new species related to Burkholderia thailandensis and the fifth member of the pseudomallei complex. Applied and Environmental Microbiology. PMID 27986727 DOI: 10.1128/Aem.02802-16  0.68
2016 Stone NE, Sidak-Loftis LC, Sahl JW, Vazquez AJ, Wiggins KB, Gillece JD, Hicks ND, Schupp JM, Busch JD, Keim P, Wagner DM. More than 50% of Clostridium difficile Isolates from Pet Dogs in Flagstaff, USA, Carry Toxigenic Genotypes. Plos One. 11: e0164504. PMID 27723795 DOI: 10.1371/Journal.Pone.0164504  0.68
2016 Sahl JW, Pearson T, Okinaka R, Schupp JM, Gillece JD, Heaton H, Birdsell D, Hepp C, Fofanov V, Noseda R, Fasanella A, Hoffmaster A, Wagner DM, Keim P. A Bacillus anthracis Genome Sequence from the Sverdlovsk 1979 Autopsy Specimens. Mbio. 7. PMID 27677796 DOI: 10.1128/Mbio.01501-16  0.96
2016 Vogler AJ, Nottingham R, Busch JD, Sahl JW, Shuey MM, Foster JT, Schupp JM, Smith SR, Rocke TE, Keim P, Wagner DM. VNTR diversity in Yersinia pestis isolates from an animal challenge study reveals the potential for in vitro mutations during laboratory cultivation. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. PMID 27664903 DOI: 10.1016/J.Meegid.2016.09.019  0.68
2016 Sahl JW, Vazquez AJ, Hall CM, Busch JD, Tuanyok A, Mayo M, Schupp JM, Lummis M, Pearson T, Shippy K, Colman RE, Allender CJ, Theobald V, Sarovich DS, Price EP, ... ... Keim P, et al. The Effects of Signal Erosion and Core Genome Reduction on the Identification of Diagnostic Markers. Mbio. 7. PMID 27651357 DOI: 10.1128/Mbio.00846-16  0.96
2016 Barragan V, Chiriboga J, Miller E, Olivas S, Birdsell D, Hepp C, Hornstra H, Schupp JM, Morales M, Gonzalez M, Reyes S, de la Cruz C, Keim P, Hartskeerl R, Trueba G, et al. High Leptospira Diversity in Animals and Humans Complicates the Search for Common Reservoirs of Human Disease in Rural Ecuador. Plos Neglected Tropical Diseases. 10: e0004990. PMID 27622673 DOI: 10.1371/Journal.Pntd.0004990  0.96
2016 Bowers JR, Lemmer D, Sahl JW, Pearson T, Driebe EM, Wojack B, Saubolle MA, Engelthaler DM, Keim P. KlebSeq: A Diagnostic Tool for Surveillance, Detection, and Monitoring of Klebsiella pneumoniae. Journal of Clinical Microbiology. PMID 27510832 DOI: 10.1128/Jcm.00927-16  0.96
2016 Shabbir M, Aleem M, Javed S, Wagner DM, Keim PS, Eqani SA, Bokhari H. Spatial analysis and identification of high risk plague regions in Pakistan based on associated rodent species distribution. Journal of Infection in Developing Countries. 10: 687-693. PMID 27482799  0.68
2016 Kersh GJ, Priestley RA, Hornstra HM, Self JS, Fitzpatrick KA, Biggerstaff BJ, Keim P, Pearson T, Massung RF. Genotyping and Axenic Growth of Coxiella burnetii Isolates Found in the United States Environment. Vector Borne and Zoonotic Diseases (Larchmont, N.Y.). PMID 27304166 DOI: 10.1089/vbz.2016.1972  0.96
2016 Pearson T, Cocking JH, Hornstra HM, Keim P. False detection of Coxiella burnetii-what is the risk? Fems Microbiology Letters. 363. PMID 27190242 DOI: 10.1093/femsle/fnw088  0.96
2016 Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, Gade L, Waddell V, Komatsu K, Arathoon E, Logemann H, Thompson GR, Chiller T, Barker B, Keim P, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. Mbio. 7. PMID 27118594 DOI: 10.1128/Mbio.00550-16  0.96
2016 Johnson SL, Bishop-Lilly KA, Ladner JT, Daligault HE, Davenport KW, Jaissle J, Frey KG, Koroleva GI, Bruce DC, Coyne SR, Broomall SM, Ketheesan N, Mayo M, Hoffmaster A, Elrod MG, ... ... Keim P, et al. Correction for Johnson et al., Complete Genome Sequences for 59 Burkholderia Isolates, Both Pathogenic and Near Neighbor. Genome Announcements. 4. PMID 27103731 DOI: 10.1128/Genomea.00313-16  0.68
2016 Okinaka RT, Keim P. The Phylogeny of Bacillus cereus sensu lato. Microbiology Spectrum. 4. PMID 26999390 DOI: 10.1128/microbiolspec.TBS-0012-2012  0.48
2016 Engelthaler DM, Valentine M, Bowers J, Pistole J, Driebe EM, Terriquez J, Nienstadt L, Carroll M, Schumacher M, Ormsby ME, Brady S, Livar E, Yazzie D, Waddell V, Peoples M, ... ... Keim P, et al. Hypervirulent emm59 Clone in Invasive Group A Streptococcus Outbreak, Southwestern United States. Emerging Infectious Diseases. 22: 734-8. PMID 26982330 DOI: 10.3201/Eid2204.151582  0.96
2016 Williamson CH, Sahl JW, Smith TJ, Xie G, Foley BT, Smith LA, Fernández RA, Lindström M, Korkeala H, Keim P, Foster J, Hill K. Comparative genomic analyses reveal broad diversity in botulinum-toxin-producing Clostridia. Bmc Genomics. 17: 180. PMID 26939550 DOI: 10.1186/S12864-016-2502-Z  0.52
2016 Bos KI, Herbig A, Sahl J, Waglechner N, Fourment M, Forrest SA, Klunk J, Schuenemann VJ, Poinar D, Kuch M, Golding GB, Dutour O, Keim P, Wagner DM, Holmes EC, et al. Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focus. Elife. 5. PMID 26795402 DOI: 10.7554/eLife.12994  0.96
2016 Keim P. A Novel Botulinum Neurotoxin and How It Tested Our Scientific Institutions. The Journal of Infectious Diseases. 213: 332-4. PMID 26068780 DOI: 10.1093/infdis/jiv328  0.96
2015 Roume H, Heintz-Buschart A, Muller EEL, May P, Satagopam VP, Laczny CC, Narayanasamy S, Lebrun LA, Hoopmann MR, Schupp JM, Gillece JD, Hicks ND, Engelthaler DM, Sauter T, Keim PS, et al. Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks. Npj Biofilms and Microbiomes. 1: 15007. PMID 28721231 DOI: 10.1038/npjbiofilms.2015.7  0.64
2015 Pullan ST, Pearson TR, Latham J, Mason J, Atkinson B, Silman NJ, Marston CK, Sahl JW, Birdsell D, Hoffmaster AR, Keim P, Vipond R. Whole-genome sequencing investigation of animal-skin-drum-associated UK anthrax cases reveals evidence of mixed populations and relatedness to a US case. Microbial Genomics. 1: e000039. PMID 28348823 DOI: 10.1099/mgen.0.000039  0.52
2015 Califf KJ, Keim PS, Wagner DM, Sahl JW. Redefining the differences in gene content between Yersinia pestis and Yersinia pseudotuberculosis using large-scale comparative genomics. Microbial Genomics. 1: e000028. PMID 28348813 DOI: 10.1099/mgen.0.000028  0.68
2015 Vogler AJ, Nottingham R, Parise KL, Keim P, Barker BM. Effective Disinfectants for Coccidioides immitis and C. posadasii. Applied Biosafety : Journal of the American Biological Safety Association. 20: 154-158. PMID 26900366 DOI: 10.1177/153567601502000306  0.68
2015 Keim P, Grunow R, Vipond R, Grass G, Hoffmaster A, Birdsell DN, Klee SR, Pullan S, Antwerpen M, Bayer BN, Latham J, Wiggins K, Hepp C, Pearson T, Brooks T, et al. Whole Genome Analysis of Injectional Anthrax Identifies Two Disease Clusters Spanning More Than 13 Years. Ebiomedicine. 2: 1613-8. PMID 26870786 DOI: 10.1016/J.Ebiom.2015.10.004  0.96
2015 Price EP, Sarovich DS, Smith EJ, MacHunter B, Harrington G, Theobald V, Hall CM, Hornstra HM, McRobb E, Podin Y, Mayo M, Sahl JW, Wagner DM, Keim P, Kaestli M, et al. Large-scale comparative genomics identifies unprecedented melioidosis cases in northern Australia caused by an Asian Burkholderia pseudomallei strain. Applied and Environmental Microbiology. PMID 26607593 DOI: 10.1128/Aem.03013-15  0.96
2015 Hall CM, Busch JD, Shippy K, Allender CJ, Kaestli M, Mayo M, Sahl JW, Schupp JM, Colman RE, Keim P, Currie BJ, Wagner DM. Diverse Burkholderia Species Isolated from Soils in the Southern United States with No Evidence of B. pseudomallei. Plos One. 10: e0143254. PMID 26600238 DOI: 10.1371/Journal.Pone.0143254  0.96
2015 Leiser OP, Merkley ED, Clowers BH, Deatherage Kaiser BL, Lin A, Hutchison JR, Melville AM, Wagner DM, Keim PS, Foster JT, Kreuzer HW. Investigation of Yersinia pestis Laboratory Adaptation through a Combined Genomics and Proteomics Approach. Plos One. 10: e0142997. PMID 26599979 DOI: 10.1371/Journal.Pone.0142997  0.96
2015 Chiriboga J, Barragan V, Arroyo G, Sosa A, Birdsell DN, España K, Mora A, Espín E, Mejía ME, Morales M, Pinargote C, Gonzalez M, Hartskeerl R, Keim P, Bretas G, et al. High Prevalence of Intermediate Leptospira spp. DNA in Febrile Humans from Urban and Rural Ecuador. Emerging Infectious Diseases. 21: 2141-7. PMID 26583534 DOI: 10.3201/Eid2112.140659  0.96
2015 Kilic S, Birdsell DN, Karagöz A, Çelebi B, Bakkaloglu Z, Arikan M, Sahl JW, Mitchell C, Rivera A, Maltinsky S, Keim P, Üstek D, Durmaz R, Wagner DM. Water as Source of Francisella tularensis Infection in Humans, Turkey. Emerging Infectious Diseases. 21: 2213-6. PMID 26583383 DOI: 10.3201/Eid2112.150634  0.96
2015 Leal NC, Sobreira M, Araújo AF, Magalhães JL, Vogler AJ, Bollig MC, Nottingham R, Keim P, Wagner DM, Almeida AM. Viability of Yersinia pestis subcultures in agar-stabs. Letters in Applied Microbiology. PMID 26524218 DOI: 10.1111/Lam.12519  0.96
2015 Vogler AJ, Keim P, Wagner DM. A review of methods for subtyping Yersinia pestis: From phenotypes to whole genome sequencing. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 37: 21-36. PMID 26518910 DOI: 10.1016/J.Meegid.2015.10.024  0.96
2015 Spring-Pearson SM, Stone JK, Doyle A, Allender CJ, Okinaka RT, Mayo M, Broomall SM, Hill JM, Karavis MA, Hubbard KS, Insalaco JM, McNew LA, Rosenzweig CN, Gibbons HS, Currie BJ, ... ... Keim P, et al. Pangenome Analysis of Burkholderia pseudomallei: Genome Evolution Preserves Gene Order despite High Recombination Rates. Plos One. 10: e0140274. PMID 26484663 DOI: 10.1371/Journal.Pone.0140274  0.96
2015 Bauer AE, Olivas S, Cooper M, Hornstra H, Keim P, Pearson T, Johnson AJ. Estimated herd prevalence and sequence types of Coxiella burnetii in bulk tank milk samples from commercial dairies in Indiana. Bmc Veterinary Research. 11: 186. PMID 26248712 DOI: 10.1186/s12917-015-0517-3  0.96
2015 Olson ND, Lund SP, Colman RE, Foster JT, Sahl JW, Schupp JM, Keim P, Morrow JB, Salit ML, Zook JM. Best practices for evaluating single nucleotide variant calling methods for microbial genomics. Frontiers in Genetics. 6: 235. PMID 26217378 DOI: 10.3389/Fgene.2015.00235  0.52
2015 Struve C, Roe CC, Stegger M, Stahlhut SG, Hansen DS, Engelthaler DM, Andersen PS, Driebe EM, Keim P, Krogfelt KA. Mapping the Evolution of Hypervirulent Klebsiella pneumoniae. Mbio. 6: e00630. PMID 26199326 DOI: 10.1128/Mbio.00630-15  0.64
2015 Bowers JR, Kitchel B, Driebe EM, MacCannell DR, Roe C, Lemmer D, de Man T, Rasheed JK, Engelthaler DM, Keim P, Limbago BM. Genomic Analysis of the Emergence and Rapid Global Dissemination of the Clonal Group 258 Klebsiella pneumoniae Pandemic. Plos One. 10: e0133727. PMID 26196384 DOI: 10.1371/Journal.Pone.0133727  0.96
2015 Driebe EM, Sahl JW, Roe C, Bowers JR, Schupp JM, Gillece JD, Kelley E, Price LB, Pearson TR, Hepp CM, Brzoska PM, Cummings CA, Furtado MR, Andersen PS, Stegger M, ... ... Keim PS, et al. Using Whole Genome Analysis to Examine Recombination across Diverse Sequence Types of Staphylococcus aureus. Plos One. 10: e0130955. PMID 26161978 DOI: 10.1371/Journal.Pone.0130955  0.96
2015 Sahl JW, Schupp JM, Rasko DA, Colman RE, Foster JT, Keim P. Phylogenetically typing bacterial strains from partial SNP genotypes observed from direct sequencing of clinical specimen metagenomic data. Genome Medicine. 7: 52. PMID 26136847 DOI: 10.1186/S13073-015-0176-9  0.96
2015 Ginther JL, Mayo M, Warrington SD, Kaestli M, Mullins T, Wagner DM, Currie BJ, Tuanyok A, Keim P. Identification of Burkholderia pseudomallei Near-Neighbor Species in the Northern Territory of Australia. Plos Neglected Tropical Diseases. 9: e0003892. PMID 26121041 DOI: 10.1371/Journal.Pntd.0003892  0.96
2015 Liu CM, Hungate BA, Tobian AA, Ravel J, Prodger JL, Serwadda D, Kigozi G, Galiwango RM, Nalugoda F, Keim P, Wawer MJ, Price LB, Gray RH. Penile Microbiota and Female Partner Bacterial Vaginosis in Rakai, Uganda. Mbio. 6. PMID 26081632 DOI: 10.1128/Mbio.00589-15  0.96
2015 Riehm JM, Projahn M, Vogler AJ, Rajerison M, Andersen G, Hall CM, Zimmermann T, Soanandrasana R, Andrianaivoarimanana V, Straubinger RK, Nottingham R, Keim P, Wagner DM, Scholz HC. Diverse Genotypes of Yersinia pestis Caused Plague in Madagascar in 2007. Plos Neglected Tropical Diseases. 9: e0003844. PMID 26069964 DOI: 10.1371/Journal.Pntd.0003844  0.68
2015 Colman RE, Schupp JM, Hicks ND, Smith DE, Buchhagen JL, Valafar F, Crudu V, Romancenco E, Noroc E, Jackson L, Catanzaro DG, Rodwell TC, Catanzaro A, Keim P, Engelthaler DM. Detection of Low-Level Mixed-Population Drug Resistance in Mycobacterium tuberculosis Using High Fidelity Amplicon Sequencing. Plos One. 10: e0126626. PMID 25970423 DOI: 10.1371/Journal.Pone.0126626  0.64
2015 Smet B, Mayo M, Peeters C, Zlosnik JE, Spilker T, Hird TJ, LiPuma JJ, Kidd TJ, Kaestli M, Ginther JL, Wagner DM, Keim P, Bell SC, Jacobs JA, Currie BJ, et al. Burkholderia stagnalis sp. nov. and Burkholderia territorii sp. nov., two novel Burkholderia cepacia complex species from environmental and human sources. International Journal of Systematic and Evolutionary Microbiology. PMID 25872960 DOI: 10.1099/Ijs.0.000251  0.96
2015 Sahl JW, Allender CJ, Colman RE, Califf KJ, Schupp JM, Currie BJ, Van Zandt KE, Gelhaus HC, Keim P, Tuanyok A. Genomic characterization of Burkholderia pseudomallei isolates selected for medical countermeasures testing: comparative genomics associated with differential virulence. Plos One. 10: e0121052. PMID 25803742 DOI: 10.1371/Journal.Pone.0121052  0.96
2015 McRobb E, Sarovich DS, Price EP, Kaestli M, Mayo M, Keim P, Currie BJ. Tracing melioidosis back to the source: using whole-genome sequencing to investigate an outbreak originating from a contaminated domestic water supply. Journal of Clinical Microbiology. 53: 1144-8. PMID 25631791 DOI: 10.1128/Jcm.03453-14  0.96
2015 Özsürekci Y, Birdsell DN, Çelik M, Karada?-Öncel E, Johansson A, Forsman M, Vogler AJ, Keim P, Ceyhan M, Wagner DM. Diverse Francisella tularensis strains and oropharyngeal tularemia, Turkey. Emerging Infectious Diseases. 21: 173-5. PMID 25531237 DOI: 10.3201/Eid2101.141087  0.96
2015 Deng X, Shariat N, Driebe EM, Roe CC, Tolar B, Trees E, Keim P, Zhang W, Dudley EG, Fields PI, Engelthaler DM. Comparative analysis of subtyping methods against a whole-genome-sequencing standard for Salmonella enterica serotype Enteritidis. Journal of Clinical Microbiology. 53: 212-8. PMID 25378576 DOI: 10.1128/Jcm.02332-14  0.96
2015 Mau RL, Liu CM, Aziz M, Schwartz E, Dijkstra P, Marks JC, Price LB, Keim P, Hungate BA. Linking soil bacterial biodiversity and soil carbon stability. The Isme Journal. 9: 1477-80. PMID 25350158 DOI: 10.1038/Ismej.2014.205  0.96
2015 Price EP, Sarovich DS, Viberg L, Mayo M, Kaestli M, Tuanyok A, Foster JT, Keim P, Pearson T, Currie BJ. Whole-genome sequencing of Burkholderia pseudomallei isolates from an unusual melioidosis case identifies a polyclonal infection with the same multilocus sequence type. Journal of Clinical Microbiology. 53: 282-6. PMID 25339397 DOI: 10.1128/Jcm.02560-14  0.96
2015 Litvintseva AP, Marsden-Haug N, Hurst S, Hill H, Gade L, Driebe EM, Ralston C, Roe C, Barker BM, Goldoft M, Keim P, Wohrle R, Thompson GR, Engelthaler DM, Brandt ME, et al. Valley fever: finding new places for an old disease: coccidioides immitis found in Washington State soil associated with recent human infection. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 60: e1-3. PMID 25165087 DOI: 10.1093/Cid/Ciu681  0.64
2014 Muller EE, Pinel N, Laczny CC, Hoopmann MR, Narayanasamy S, Lebrun LA, Roume H, Lin J, May P, Hicks ND, Heintz-Buschart A, Wampach L, Liu CM, Price LB, Gillece JD, ... ... Keim PS, et al. Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage. Nature Communications. 5: 5603. PMID 25424998 DOI: 10.1038/Ncomms6603  0.96
2014 Wahab T, Birdsell DN, Hjertqvist M, Mitchell CL, Wagner DM, Keim PS, Hedenström I, Löfdahl S. Insights to genetic characterization tools for epidemiological tracking of Francisella tularensis in Sweden. Plos One. 9: e112167. PMID 25401326 DOI: 10.1371/Journal.Pone.0112167  0.96
2014 Eppinger M, Pearson T, Koenig SS, Pearson O, Hicks N, Agrawal S, Sanjar F, Galens K, Daugherty S, Crabtree J, Hendriksen RS, Price LB, Upadhyay BP, Shakya G, Fraser CM, ... ... Keim PS, et al. Genomic epidemiology of the Haitian cholera outbreak: a single introduction followed by rapid, extensive, and continued spread characterized the onset of the epidemic. Mbio. 5: e01721. PMID 25370488 DOI: 10.1128/Mbio.01721-14  0.96
2014 Rawat A, Engelthaler DM, Driebe EM, Keim P, Foster JT. MetaGeniE: characterizing human clinical samples using deep metagenomic sequencing. Plos One. 9: e110915. PMID 25365329 DOI: 10.1371/Journal.Pone.0110915  0.96
2014 Scholz HC, Pearson T, Hornstra H, Projahn M, Terzioglu R, Wernery R, Georgi E, Riehm JM, Wagner DM, Keim PS, Joseph M, Johnson B, Kinne J, Jose S, Hepp CM, et al. Genotyping of Burkholderia mallei from an outbreak of glanders in Bahrain suggests multiple introduction events. Plos Neglected Tropical Diseases. 8: e3195. PMID 25255232 DOI: 10.1371/Journal.Pntd.0003195  0.96
2014 Wagner DM, Keim PS, Scholz HC, Holmes EC, Poinar H. Yersinia pestis and the three plague pandemics--authors' reply. The Lancet. Infectious Diseases. 14: 919. PMID 25253401 DOI: 10.1016/S1473-3099(14)70923-5  0.96
2014 Wendt JM, Kaul D, Limbago BM, Ramesh M, Cohle S, Denison AM, Driebe EM, Rasheed JK, Zaki SR, Blau DM, Paddock CD, McDougal LK, Engelthaler DM, Keim PS, Roe CC, et al. Transmission of methicillin-resistant Staphylococcus aureus infection through solid organ transplantation: confirmation via whole genome sequencing. American Journal of Transplantation : Official Journal of the American Society of Transplantation and the American Society of Transplant Surgeons. 14: 2633-9. PMID 25250717 DOI: 10.1111/Ajt.12898  0.96
2014 Birdsell DN, Vogler AJ, Buchhagen J, Clare A, Kaufman E, Naumann A, Driebe E, Wagner DM, Keim PS. TaqMan real-time PCR assays for single-nucleotide polymorphisms which identify Francisella tularensis and its subspecies and subpopulations. Plos One. 9: e107964. PMID 25238067 DOI: 10.1371/Journal.Pone.0107964  0.96
2014 Okinaka RT, Challacombe J, Drees K, Birdsell DN, Janke N, Naumann A, Seymour M, Hornstra H, Schupp J, Sahl J, Foster JT, Pearson T, Turnbull P, Keim P. Genome Sequence of Bacillus anthracis STI, a Sterne-Like Georgian/Soviet Vaccine Strain. Genome Announcements. 2. PMID 25237016 DOI: 10.1128/Genomea.00853-14  0.96
2014 Gyuranecz M, Sulyok K, Balla E, Mag T, Balazs A, Simor Z, Denes B, Hornok S, Bajnoczi P, Hornstra H, Pearson T, Keim P, Dan A. Q fever epidemic in Hungary, April to July 2013. Euro Surveillance : Bulletin EuropéEn Sur Les Maladies Transmissibles = European Communicable Disease Bulletin. 19. PMID 25108535 DOI: 10.2807/1560-7917.Es2014.19.30.20863  0.96
2014 Johansson A, Lärkeryd A, Widerström M, Mörtberg S, Myrtännäs K, Ohrman C, Birdsell D, Keim P, Wagner DM, Forsman M, Larsson P. An outbreak of respiratory tularemia caused by diverse clones of Francisella tularensis. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 59: 1546-53. PMID 25097081 DOI: 10.1093/Cid/Ciu621  0.96
2014 Khmaladze E, Birdsell DN, Naumann AA, Hochhalter CB, Seymour ML, Nottingham R, Beckstrom-Sternberg SM, Beckstrom-Sternberg J, Nikolich MP, Chanturia G, Zhgenti E, Zakalashvili M, Malania L, Babuadze G, Tsertsvadze N, ... ... Keim P, et al. Phylogeography of Bacillus anthracis in the country of Georgia shows evidence of population structuring and is dissimilar to other regional genotypes. Plos One. 9: e102651. PMID 25047912 DOI: 10.1371/Journal.Pone.0102651  0.96
2014 Engelthaler DM, Hicks ND, Gillece JD, Roe CC, Schupp JM, Driebe EM, Gilgado F, Carriconde F, Trilles L, Firacative C, Ngamskulrungroj P, Castañeda E, Lazera Mdos S, Melhem MS, Pérez-Bercoff A, ... ... Keim P, et al. Cryptococcus gattii in North American Pacific Northwest: whole-population genome analysis provides insights into species evolution and dispersal. Mbio. 5: e01464-14. PMID 25028429 DOI: 10.1128/Mbio.01464-14  0.96
2014 Wang Y, Peng Y, Hai R, Xia L, Li H, Zhang Z, Cai H, Liang Y, Shen X, Yu D, Birdsell D, Wagner DM, Keim P. Diversity of Francisella tularensis subsp. holarctica lineages, China. Emerging Infectious Diseases. 20: 1191-4. PMID 24963721 DOI: 10.3201/Eid2007.130931  0.96
2014 Litvintseva AP, Hurst S, Gade L, Frace MA, Hilsabeck R, Schupp JM, Gillece JD, Roe C, Smith D, Keim P, Lockhart SR, Changayil S, Weil MR, MacCannell DR, Brandt ME, et al. Whole-genome analysis of Exserohilum rostratum from an outbreak of fungal meningitis and other infections. Journal of Clinical Microbiology. 52: 3216-22. PMID 24951807 DOI: 10.1128/Jcm.00936-14  0.96
2014 Kelley EJ, Driebe EM, Etienne K, Brandt ME, Schupp JM, Gillece JD, Trujillo JS, Lockhart SR, Deak E, Keim PS, Engelthaler DM. Real-time PCR assays for genotyping of Cryptococcus gattii in North America. Bmc Microbiology. 14: 125. PMID 24886039 DOI: 10.1186/1471-2180-14-125  0.96
2014 Sulyok KM, Kreizinger Z, Hornstra HM, Pearson T, Szigeti A, Dán Á, Balla E, Keim PS, Gyuranecz M. Genotyping of Coxiella burnetii from domestic ruminants and human in Hungary: indication of various genotypes. Bmc Veterinary Research. 10: 107. PMID 24885415 DOI: 10.1186/1746-6148-10-107  0.96
2014 Birdsell DN, Johansson A, Öhrman C, Kaufman E, Molins C, Pearson T, Gyuranecz M, Naumann A, Vogler AJ, Myrtennäs K, Larsson P, Forsman M, Sjödin A, Gillece JD, Schupp J, ... ... Keim P, et al. Francisella tularensis subsp. tularensis group A.I, United States. Emerging Infectious Diseases. 20: 861-5. PMID 24755401 DOI: 10.3201/Eid2005.131559  0.96
2014 Sahl JW, Caporaso JG, Rasko DA, Keim P. The large-scale blast score ratio (LS-BSR) pipeline: a method to rapidly compare genetic content between bacterial genomes. Peerj. 2: e332. PMID 24749011 DOI: 10.7717/Peerj.332  0.96
2014 Orata FD, Keim PS, Boucher Y. The 2010 cholera outbreak in Haiti: how science solved a controversy. Plos Pathogens. 10: e1003967. PMID 24699938 DOI: 10.1371/Journal.Ppat.1003967  0.96
2014 Pearson T, Hornstra HM, Hilsabeck R, Gates LT, Olivas SM, Birdsell DM, Hall CM, German S, Cook JM, Seymour ML, Priestley RA, Kondas AV, Clark Friedman CL, Price EP, Schupp JM, ... ... Keim P, et al. High prevalence and two dominant host-specific genotypes of Coxiella burnetii in U.S. milk. Bmc Microbiology. 14: 41. PMID 24533573 DOI: 10.1186/1471-2180-14-41  0.96
2014 Stone JK, Heiss C, Wang Z, Black I, Grasso SA, Koppisch AT, Azadi P, Keim P, Tuanyok A. Structural characterization of polysaccharides expressed by Burkholderia oklahomensis E0147. Carbohydrate Research. 386: 68-72. PMID 24491843 DOI: 10.1016/J.Carres.2013.08.011  0.96
2014 Wagner DM, Klunk J, Harbeck M, Devault A, Waglechner N, Sahl JW, Enk J, Birdsell DN, Kuch M, Lumibao C, Poinar D, Pearson T, Fourment M, Golding B, Riehm JM, ... ... Keim PS, et al. Yersinia pestis and the plague of Justinian 541-543 AD: a genomic analysis. The Lancet. Infectious Diseases. 14: 319-26. PMID 24480148 DOI: 10.1016/S1473-3099(13)70323-2  0.96
2014 Hanczaruk M, Reischl U, Holzmann T, Frangoulidis D, Wagner DM, Keim PS, Antwerpen MH, Meyer H, Grass G. Injectional anthrax in heroin users, Europe, 2000-2012. Emerging Infectious Diseases. 20: 322-3. PMID 24447525 DOI: 10.3201/eid2002.120921  0.96
2014 Casadevall A, Enquist L, Imperiale MJ, Keim P, Osterholm MT, Relman DA. Redaction of sensitive data in the publication of dual use research of concern. Mbio. 5: e00991-13. PMID 24381302 DOI: 10.1128/Mbio.00991-13  0.96
2014 Shuey MM, Drees KP, Lindner DL, Keim P, Foster JT. Highly sensitive quantitative PCR for the detection and differentiation of Pseudogymnoascus destructans and other Pseudogymnoascus species. Applied and Environmental Microbiology. 80: 1726-31. PMID 24375140 DOI: 10.1128/AEM.02897-13  0.96
2014 Wattam AR, Foster JT, Mane SP, Beckstrom-Sternberg SM, Beckstrom-Sternberg JM, Dickerman AW, Keim P, Pearson T, Shukla M, Ward DV, Williams KP, Sobral BW, Tsolis RM, Whatmore AM, O'Callaghan D. Comparative phylogenomics and evolution of the Brucellae reveal a path to virulence. Journal of Bacteriology. 196: 920-30. PMID 24336939 DOI: 10.1128/Jb.01091-13  0.96
2014 Podin Y, Sarovich DS, Price EP, Kaestli M, Mayo M, Hii K, Ngian H, Wong S, Wong I, Wong J, Mohan A, Ooi M, Fam T, Wong J, Tuanyok A, ... Keim P, et al. Burkholderia pseudomallei isolates from Sarawak, Malaysian Borneo, are predominantly susceptible to aminoglycosides and macrolides. Antimicrobial Agents and Chemotherapy. 58: 162-6. PMID 24145517 DOI: 10.1128/Aac.01842-13  0.96
2013 Busch JD, Van Andel R, Stone NE, Cobble KR, Nottingham R, Lee J, VerSteeg M, Corcoran J, Cordova J, Van Pelt W, Shuey MM, Foster JT, Schupp JM, Beckstrom-Sternberg S, Beckstrom-Sternberg J, ... Keim P, et al. The innate immune response may be important for surviving plague in wild Gunnison's prairie dogs. Journal of Wildlife Diseases. 49: 920-31. PMID 24502719 DOI: 10.7589/2012-08-209  0.96
2013 Price LB, Johnson JR, Aziz M, Clabots C, Johnston B, Tchesnokova V, Nordstrom L, Billig M, Chattopadhyay S, Stegger M, Andersen PS, Pearson T, Riddell K, Rogers P, Scholes D, ... ... Keim P, et al. The epidemic of extended-spectrum-β-lactamase-producing Escherichia coli ST131 is driven by a single highly pathogenic subclone, H30-Rx. Mbio. 4: e00377-13. PMID 24345742 DOI: 10.1128/Mbio.00377-13  0.96
2013 Andersen PS, Stegger M, Aziz M, Contente-Cuomo T, Gibbons HS, Keim P, Sokurenko EV, Johnson JR, Price LB. Complete Genome Sequence of the Epidemic and Highly Virulent CTX-M-15-Producing H30-Rx Subclone of Escherichia coli ST131. Genome Announcements. 1. PMID 24309736 DOI: 10.1128/Genomea.00988-13  0.52
2013 Stone JK, Johnson SL, Bruce DC, Detter JC, Mayo M, Currie BJ, Gelhaus HC, Keim P, Tuanyok A. Complete Genome Sequence of the Encephalomyelitic Burkholderia pseudomallei Strain MSHR305. Genome Announcements. 1. PMID 23969058 DOI: 10.1128/Genomea.00656-13  0.32
2013 Price EP, Sarovich DS, Webb JR, Ginther JL, Mayo M, Cook JM, Seymour ML, Kaestli M, Theobald V, Hall CM, Busch JD, Foster JT, Keim P, Wagner DM, Tuanyok A, et al. Accurate and rapid identification of the Burkholderia pseudomallei near-neighbour, Burkholderia ubonensis, using real-time PCR. Plos One. 8: e71647. PMID 23967229 DOI: 10.1371/Journal.Pone.0071647  0.96
2013 Stegger M, Driebe EM, Roe C, Lemmer D, Bowers JR, Engelthaler DM, Keim P, Andersen PS. Genome Sequence of Staphylococcus aureus Strain CA-347, a USA600 Methicillin-Resistant Isolate. Genome Announcements. 1. PMID 23887918 DOI: 10.1128/Genomea.00517-13  0.64
2013 Engelthaler DM, Kelley E, Driebe EM, Bowers J, Eberhard CF, Trujillo J, Decruyenaere F, Schupp JM, Mossong J, Keim P, Even J. Rapid and robust phylotyping of spa t003, a dominant MRSA clone in Luxembourg and other European countries. Bmc Infectious Diseases. 13: 339. PMID 23879266 DOI: 10.1186/1471-2334-13-339  0.96
2013 Price EP, Sarovich DS, Mayo M, Tuanyok A, Drees KP, Kaestli M, Beckstrom-Sternberg SM, Babic-Sternberg JS, Kidd TJ, Bell SC, Keim P, Pearson T, Currie BJ. Within-host evolution of Burkholderia pseudomallei over a twelve-year chronic carriage infection. Mbio. 4. PMID 23860767 DOI: 10.1128/Mbio.00388-13  0.96
2013 Liu CM, Soldanova K, Nordstrom L, Dwan MG, Moss OL, Contente-Cuomo TL, Keim P, Price LB, Lane AP. Medical therapy reduces microbiota diversity and evenness in surgically recalcitrant chronic rhinosinusitis. International Forum of Allergy & Rhinology. 3: 775-81. PMID 23843343 DOI: 10.1002/Alr.21195  0.96
2013 Sarovich DS, Colman RE, Price EP, Massire C, Von Schulze AT, Waddell V, Anderson SM, Ecker DJ, Liguori AP, Engelthaler DM, Sampath R, Keim P, Eshoo MW, Wagner DM. Molecular genotyping of Acinetobacter spp. isolated in Arizona, USA, using multilocus PCR and mass spectrometry. Journal of Medical Microbiology. 62: 1295-300. PMID 23741021 DOI: 10.1099/Jmm.0.052381-0  0.96
2013 Pearson T, Hornstra HM, Sahl JW, Schaack S, Schupp JM, Beckstrom-Sternberg SM, O'Neill MW, Priestley RA, Champion MD, Beckstrom-Sternberg JS, Kersh GJ, Samuel JE, Massung RF, Keim P. When outgroups fail; phylogenomics of rooting the emerging pathogen, Coxiella burnetii. Systematic Biology. 62: 752-62. PMID 23736103 DOI: 10.1093/Sysbio/Syt038  0.96
2013 Sahl JW, Stone JK, Gelhaus HC, Warren RL, Cruttwell CJ, Funnell SG, Keim P, Tuanyok A. Genome Sequence of Burkholderia pseudomallei NCTC 13392. Genome Announcements. 1. PMID 23704173 DOI: 10.1128/Genomea.00183-13  0.52
2013 Harbeck M, Seifert L, Hänsch S, Wagner DM, Birdsell D, Parise KL, Wiechmann I, Grupe G, Thomas A, Keim P, Zöller L, Bramanti B, Riehm JM, Scholz HC. Yersinia pestis DNA from skeletal remains from the 6(th) century AD reveals insights into Justinianic Plague. Plos Pathogens. 9: e1003349. PMID 23658525 DOI: 10.1371/Journal.Ppat.1003349  0.96
2013 Birdsell DN, Antwerpen M, Keim P, Hanczaruk M, Foster JT, Sahl JW, Wagner DM, Grass G. Draft Genome Sequences of Two Bulgarian Bacillus anthracis Strains. Genome Announcements. 1: e0015213. PMID 23599294 DOI: 10.1128/Genomea.00152-13  0.68
2013 Liu CM, Hungate BA, Tobian AA, Serwadda D, Ravel J, Lester R, Kigozi G, Aziz M, Galiwango RM, Nalugoda F, Contente-Cuomo TL, Wawer MJ, Keim P, Gray RH, Price LB. Male circumcision significantly reduces prevalence and load of genital anaerobic bacteria. Mbio. 4: e00076. PMID 23592260 DOI: 10.1128/Mbio.00076-13  0.96
2013 Gyuranecz M, Rannals BD, Allen CA, Jánosi S, Keim PS, Foster JT. Within-host evolution of Brucella canis during a canine brucellosis outbreak in a kennel. Bmc Veterinary Research. 9: 76. PMID 23587163 DOI: 10.1186/1746-6148-9-76  0.96
2013 Leiser OP, Corn JL, Schmit BS, Keim PS, Foster JT. Feral swine brucellosis in the United States and prospective genomic techniques for disease epidemiology. Veterinary Microbiology. 166: 1-10. PMID 23548760 DOI: 10.1016/J.Vetmic.2013.02.025  0.96
2013 Trueba G, Garcés V, V VB, Colman RE, Seymour M, Vogler AJ, Keim P. Escherichia coli O157:H7 in Ecuador: animal reservoirs, yet no human disease. Vector Borne and Zoonotic Diseases (Larchmont, N.Y.). 13: 295-8. PMID 23473224 DOI: 10.1089/Vbz.2012.1128  0.96
2013 Vogler AJ, Chan F, Nottingham R, Andersen G, Drees K, Beckstrom-Sternberg SM, Wagner DM, Chanteau S, Keim P. A decade of plague in Mahajanga, Madagascar: insights into the global maritime spread of pandemic plague. Mbio. 4: e00623-12. PMID 23404402 DOI: 10.1128/Mbio.00623-12  0.96
2013 Sahl JW, Gillece JD, Schupp JM, Waddell VG, Driebe EM, Engelthaler DM, Keim P. Evolution of a pathogen: a comparative genomics analysis identifies a genetic pathway to pathogenesis in Acinetobacter. Plos One. 8: e54287. PMID 23365658 DOI: 10.1371/Journal.Pone.0054287  0.96
2013 Duncan DD, Vogler AJ, Wolcott MJ, Li F, Sarovich DS, Birdsell DN, Watson LM, Hall TA, Sampath R, Housley R, Blyn LB, Hofstadler SA, Ecker DJ, Keim P, Wagner DM, et al. Identification and typing of Francisella tularensis with a highly automated genotyping assay. Letters in Applied Microbiology. 56: 128-34. PMID 23121644 DOI: 10.1111/Lam.12022  0.96
2013 Perego UA, Achilli A, Ekins JE, Milani L, Lari M, Pilli E, Brown A, Price EP, Wolken SR, Matthews M, Allen CA, Pearson TR, Angerhofer N, Caramelli D, Kupferschmid T, ... Keim PS, et al. The Mountain Meadows Massacre and "poisoned springs": scientific testing of the more recent, anthrax theory. International Journal of Legal Medicine. 127: 77-83. PMID 22395921 DOI: 10.1007/s00414-012-0681-y  0.96
2012 Etienne KA, Gillece J, Hilsabeck R, Schupp JM, Colman R, Lockhart SR, Gade L, Thompson EH, Sutton DA, Neblett-Fanfair R, Park BJ, Turabelidze G, Keim P, Brandt ME, Deak E, et al. Whole genome sequence typing to investigate the Apophysomyces outbreak following a tornado in Joplin, Missouri, 2011. Plos One. 7: e49989. PMID 23209631 DOI: 10.1371/Journal.Pone.0049989  0.96
2012 Muller EE, Pinel N, Gillece JD, Schupp JM, Price LB, Engelthaler DM, Levantesi C, Tandoi V, Luong K, Baliga NS, Korlach J, Keim PS, Wilmes P. Genome sequence of "Candidatus Microthrix parvicella" Bio17-1, a long-chain-fatty-acid-accumulating filamentous actinobacterium from a biological wastewater treatment plant. Journal of Bacteriology. 194: 6670-1. PMID 23144412 DOI: 10.1128/Jb.01765-12  0.96
2012 Liu CM, Kachur S, Dwan MG, Abraham AG, Aziz M, Hsueh PR, Huang YT, Busch JD, Lamit LJ, Gehring CA, Keim P, Price LB. FungiQuant: a broad-coverage fungal quantitative real-time PCR assay. Bmc Microbiology. 12: 255. PMID 23136846 DOI: 10.1186/1471-2180-12-255  0.96
2012 Stone JK, Mayo M, Grasso SA, Ginther JL, Warrington SD, Allender CJ, Doyle A, Georgia S, Kaestli M, Broomall SM, Karavis MA, Insalaco JM, Hubbard KS, McNew LA, Gibbons HS, ... ... Keim P, et al. Detection of Burkholderia pseudomallei O-antigen serotypes in near-neighbor species. Bmc Microbiology. 12: 250. PMID 23126230 DOI: 10.1186/1471-2180-12-250  0.96
2012 Aarestrup FM, Brown EW, Detter C, Gerner-Smidt P, Gilmour MW, Harmsen D, Hendriksen RS, Hewson R, Heymann DL, Johansson K, Ijaz K, Keim PS, Koopmans M, Kroneman A, Lo Fo Wong D, et al. Integrating genome-based informatics to modernize global disease monitoring, information sharing, and response. Emerging Infectious Diseases. 18: e1. PMID 23092707 DOI: 10.3201/eid/1811.120453  0.96
2012 Van Zandt KE, Tuanyok A, Keim PS, Warren RL, Gelhaus HC. An objective approach for Burkholderia pseudomallei strain selection as challenge material for medical countermeasures efficacy testing. Frontiers in Cellular and Infection Microbiology. 2: 120. PMID 23057010 DOI: 10.3389/fcimb.2012.00120  0.32
2012 Frerichs RR, Boncy J, Barrais R, Keim PS, Piarroux R. Source attribution of 2010 cholera epidemic in Haiti. Proceedings of the National Academy of Sciences of the United States of America. 109: E3208; author reply . PMID 23047703 DOI: 10.1073/Pnas.1211512109  0.96
2012 Sarovich DS, Price EP, Limmathurotsakul D, Cook JM, Von Schulze AT, Wolken SR, Keim P, Peacock SJ, Pearson T. Development of ceftazidime resistance in an acute Burkholderia pseudomallei infection. Infection and Drug Resistance. 5: 129-32. PMID 22977307 DOI: 10.2147/Idr.S35529  0.96
2012 Foster JT, Price LB, Beckstrom-Sternberg SM, Pearson T, Brown WD, Kiesling DM, Allen CA, Liu CM, Beckstrom-Sternberg J, Roberto FF, Keim P. Genotyping of Brucella species using clade specific SNPs. Bmc Microbiology. 12: 110. PMID 22712667 DOI: 10.1186/1471-2180-12-110  0.96
2012 Price EP, Dale JL, Cook JM, Sarovich DS, Seymour ML, Ginther JL, Kaufman EL, Beckstrom-Sternberg SM, Mayo M, Kaestli M, Glass MB, Gee JE, Wuthiekanun V, Warner JM, Baker A, ... ... Keim P, et al. Development and validation of Burkholderia pseudomallei-specific real-time PCR assays for clinical, environmental or forensic detection applications. Plos One. 7: e37723. PMID 22624061 DOI: 10.1371/Journal.Pone.0037723  0.96
2012 Frerichs RR, Keim PS, Barrais R, Piarroux R. Nepalese origin of cholera epidemic in Haiti Clinical Microbiology and Infection. 18: E158-E163. PMID 22510219 DOI: 10.1111/J.1469-0691.2012.03841.X  0.96
2012 Liu CM, Aziz M, Kachur S, Hsueh PR, Huang YT, Keim P, Price LB. BactQuant: an enhanced broad-coverage bacterial quantitative real-time PCR assay. Bmc Microbiology. 12: 56. PMID 22510143 DOI: 10.1186/1471-2180-12-56  0.96
2012 Kaestli M, Richardson LJ, Colman RE, Tuanyok A, Price EP, Bowers JR, Mayo M, Kelley E, Seymour ML, Sarovich DS, Pearson T, Engelthaler DM, Wagner DM, Keim PS, Schupp JM, et al. Comparison of TaqMan PCR assays for detection of the melioidosis agent Burkholderia pseudomallei in clinical specimens. Journal of Clinical Microbiology. 50: 2059-62. PMID 22442327 DOI: 10.1128/Jcm.06737-11  0.96
2012 Birdsell DN, Pearson T, Price EP, Hornstra HM, Nera RD, Stone N, Gruendike J, Kaufman EL, Pettus AH, Hurbon AN, Buchhagen JL, Harms NJ, Chanturia G, Gyuranecz M, Wagner DM, ... Keim PS, et al. Melt analysis of mismatch amplification mutation assays (Melt-MAMA): a functional study of a cost-effective SNP genotyping assay in bacterial models. Plos One. 7: e32866. PMID 22438886 DOI: 10.1371/Journal.Pone.0032866  0.96
2012 Nikolakakis K, Amber S, Wilbur JS, Diner EJ, Aoki SK, Poole SJ, Tuanyok A, Keim PS, Peacock S, Hayes CS, Low DA. The toxin/immunity network of Burkholderia pseudomallei contact-dependent growth inhibition (CDI) systems. Molecular Microbiology. 84: 516-29. PMID 22435733 DOI: 10.1111/J.1365-2958.2012.08039.X  0.96
2012 Sarovich DS, Price EP, Von Schulze AT, Cook JM, Mayo M, Watson LM, Richardson L, Seymour ML, Tuanyok A, Engelthaler DM, Pearson T, Peacock SJ, Currie BJ, Keim P, Wagner DM. Characterization of ceftazidime resistance mechanisms in clinical isolates of Burkholderia pseudomallei from Australia. Plos One. 7: e30789. PMID 22363490 DOI: 10.1371/Journal.Pone.0030789  0.96
2012 Price LB, Stegger M, Hasman H, Aziz M, Larsen J, Andersen PS, Pearson T, Waters AE, Foster JT, Schupp J, Gillece J, Driebe E, Liu CM, Springer B, Zdovc I, ... ... Keim P, et al. Staphylococcus aureus CC398: host adaptation and emergence of methicillin resistance in livestock. Mbio. 3. PMID 22354957 DOI: 10.1128/Mbio.00305-11  0.96
2012 Gyuranecz M, Birdsell DN, Splettstoesser W, Seibold E, Beckstrom-Sternberg SM, Makrai L, Fodor L, Fabbi M, Vicari N, Johansson A, Busch JD, Vogler AJ, Keim P, Wagner DM. Phylogeography of Francisella tularensis subsp. holarctica, Europe. Emerging Infectious Diseases. 18: 290-3. PMID 22305204 DOI: 10.3201/Eid1802.111305  0.96
2012 Berns KI, Casadevall A, Cohen ML, Ehrlich SA, Enquist LW, Fitch JP, Franz DR, Fraser-Liggett CM, Grant CM, Imperiale MJ, Kanabrocki J, Keim PS, Lemon SM, Levy SB, Lumpkin JR, et al. Public health and biosecurity. Adaptations of avian flu virus are a cause for concern. Science (New York, N.Y.). 335: 660-1. PMID 22294736 DOI: 10.1126/Science.1217994  0.96
2012 Keim PS. The NSABB recommendations: rationale, impact, and implications. Mbio. 3. PMID 22294677 DOI: 10.1128/mBio.00021-12  0.96
2012 Berns KI, Casadevall A, Cohen ML, Ehrlich SA, Enquist LW, Fitch JP, Franz DR, Fraser-Liggett CM, Grant CM, Imperiale MJ, Kanabrocki J, Keim PS, Lemon SM, Levy SB, Lumpkin JR, et al. Policy: Adaptations of avian flu virus are a cause for concern. Nature. 482: 153-4. PMID 22294204 DOI: 10.1038/482153A  0.96
2012 Keim PS. Q&A: Reasons for proposed redaction of flu paper. Nature. 482: 156-7. PMID 22294203 DOI: 10.1038/482156a  0.96
2012 Bowers JR, Driebe EM, Nibecker JL, Wojack BR, Sarovich DS, Wong AH, Brzoska PM, Hubert N, Knadler A, Watson LM, Wagner DM, Furtado MR, Saubolle M, Engelthaler DM, Keim PS. Dominance of multidrug resistant CC271 clones in macrolide-resistant streptococcus pneumoniae in Arizona. Bmc Microbiology. 12: 12. PMID 22251616 DOI: 10.1186/1471-2180-12-12  0.96
2012 Tuanyok A, Stone JK, Mayo M, Kaestli M, Gruendike J, Georgia S, Warrington S, Mullins T, Allender CJ, Wagner DM, Chantratita N, Peacock SJ, Currie BJ, Keim P. The genetic and molecular basis of O-antigenic diversity in Burkholderia pseudomallei lipopolysaccharide. Plos Neglected Tropical Diseases. 6: e1453. PMID 22235357 DOI: 10.1371/Journal.Pntd.0001453  0.96
2012 Kaestli M, Schmid M, Mayo M, Rothballer M, Harrington G, Richardson L, Hill A, Hill J, Tuanyok A, Keim P, Hartmann A, Currie BJ. Out of the ground: aerial and exotic habitats of the melioidosis bacterium Burkholderia pseudomallei in grasses in Australia. Environmental Microbiology. 14: 2058-70. PMID 22176696 DOI: 10.1111/j.1462-2920.2011.02671.x  0.32
2012 Richardson LJ, Kaestli M, Mayo M, Bowers JR, Tuanyok A, Schupp J, Engelthaler D, Wagner DM, Keim PS, Currie BJ. Towards a rapid molecular diagnostic for melioidosis: Comparison of DNA extraction methods from clinical specimens. Journal of Microbiological Methods. 88: 179-81. PMID 22108495 DOI: 10.1016/J.Mimet.2011.10.023  0.96
2011 Hoopes JD, Driebe EM, Kelley E, Engelthaler DM, Keim PS, Perelson AS, Rong L, Went GT, Nguyen JT. Triple combination antiviral drug (TCAD) composed of amantadine, oseltamivir, and ribavirin impedes the selection of drug-resistant influenza A virus. Plos One. 6: e29778. PMID 22220216 DOI: 10.1371/Journal.Pone.0029778  0.96
2011 Liguori AP, Warrington SD, Ginther JL, Pearson T, Bowers J, Glass MB, Mayo M, Wuthiekanun V, Engelthaler D, Peacock SJ, Currie BJ, Wagner DM, Keim P, Tuanyok A. Diversity of 16S-23S rDNA internal transcribed spacer (ITS) reveals phylogenetic relationships in Burkholderia pseudomallei and its near-neighbors. Plos One. 6: e29323. PMID 22195045 DOI: 10.1371/Journal.Pone.0029323  0.96
2011 Dale J, Price EP, Hornstra H, Busch JD, Mayo M, Godoy D, Wuthiekanun V, Baker A, Foster JT, Wagner DM, Tuanyok A, Warner J, Spratt BG, Peacock SJ, Currie BJ, ... Keim P, et al. Epidemiological tracking and population assignment of the non-clonal bacterium, Burkholderia pseudomallei. Plos Neglected Tropical Diseases. 5: e1381. PMID 22180792 DOI: 10.1371/Journal.Pntd.0001381  0.96
2011 Marston CK, Allen CA, Beaudry J, Price EP, Wolken SR, Pearson T, Keim P, Hoffmaster AR. Molecular epidemiology of anthrax cases associated with recreational use of animal hides and yarn in the United States. Plos One. 6: e28274. PMID 22174783 DOI: 10.1371/Journal.Pone.0028274  0.96
2011 Gillece JD, Schupp JM, Balajee SA, Harris J, Pearson T, Yan Y, Keim P, DeBess E, Marsden-Haug N, Wohrle R, Engelthaler DM, Lockhart SR. Whole genome sequence analysis of Cryptococcus gattii from the Pacific Northwest reveals unexpected diversity. Plos One. 6: e28550. PMID 22163313 DOI: 10.1371/Journal.Pone.0028550  0.96
2011 Busch JD, Van Andel R, Cordova J, Colman RE, Keim P, Rocke TE, Leid JG, Van Pelt WE, Wagner DM. Population differences in host immune factors may influence survival of Gunnison's prairie dogs (Cynomys gunnisoni) during plague outbreaks. Journal of Wildlife Diseases. 47: 968-73. PMID 22102668 DOI: 10.7589/0090-3558-47.4.968  0.96
2011 Hansen CM, Vogler AJ, Keim P, Wagner DM, Hueffer K. Tularemia in Alaska, 1938 - 2010. Acta Veterinaria Scandinavica. 53: 61. PMID 22099502 DOI: 10.1186/1751-0147-53-61  0.96
2011 Hornstra HM, Priestley RA, Georgia SM, Kachur S, Birdsell DN, Hilsabeck R, Gates LT, Samuel JE, Heinzen RA, Kersh GJ, Keim P, Massung RF, Pearson T. Rapid typing of Coxiella burnetii. Plos One. 6: e26201. PMID 22073151 DOI: 10.1371/Journal.Pone.0026201  0.96
2011 Keim PS, Aarestrup FM, Shakya G, Price LB, Hendriksen RS, Engelthaler DM, Pearson T. Reply to "South Asia instead of Nepal may be the origin of the Haitian cholera outbreak strain". Mbio. 2: e00245-11. PMID 22045990 DOI: 10.1128/Mbio.00245-11  0.96
2011 Engelthaler DM, Bowers J, Schupp JA, Pearson T, Ginther J, Hornstra HM, Dale J, Stewart T, Sunenshine R, Waddell V, Levy C, Gillece J, Price LB, Contente T, Beckstrom-Sternberg SM, ... ... Keim P, et al. Molecular investigations of a locally acquired case of melioidosis in Southern AZ, USA. Plos Neglected Tropical Diseases. 5: e1347. PMID 22028940 DOI: 10.1371/Journal.Pntd.0001347  0.96
2011 Okinaka RT, Price EP, Wolken SR, Gruendike JM, Chung WK, Pearson T, Xie G, Munk C, Hill KK, Challacombe J, Ivins BE, Schupp JM, Beckstrom-Sternberg SM, Friedlander A, Keim P. An attenuated strain of Bacillus anthracis (CDC 684) has a large chromosomal inversion and altered growth kinetics. Bmc Genomics. 12: 477. PMID 21962024 DOI: 10.1186/1471-2164-12-477  0.96
2011 Vogler AJ, Chan F, Wagner DM, Roumagnac P, Lee J, Nera R, Eppinger M, Ravel J, Rahalison L, Rasoamanana BW, Beckstrom-Sternberg SM, Achtman M, Chanteau S, Keim P. Phylogeography and molecular epidemiology of Yersinia pestis in Madagascar. Plos Neglected Tropical Diseases. 5: e1319. PMID 21931876 DOI: 10.1371/Journal.Pntd.0001319  0.96
2011 Hendriksen RS, Price LB, Schupp JM, Gillece JD, Kaas RS, Engelthaler DM, Bortolaia V, Pearson T, Waters AE, Upadhyay BP, Shrestha SD, Adhikari S, Shakya G, Keim PS, Aarestrup FM. Population genetics of Vibrio cholerae from Nepal in 2010: evidence on the origin of the Haitian outbreak. Mbio. 2: e00157-11. PMID 21862630 DOI: 10.1128/Mbio.00157-11  0.96
2011 James SH, Hartline CB, Harden EA, Driebe EM, Schupp JM, Engelthaler DM, Keim PS, Bowlin TL, Kern ER, Prichard MN. Cyclopropavir inhibits the normal function of the human cytomegalovirus UL97 kinase. Antimicrobial Agents and Chemotherapy. 55: 4682-91. PMID 21788463 DOI: 10.1016/J.Antiviral.2011.03.010  0.96
2011 Liu CM, Cosetti MK, Aziz M, Buchhagen JL, Contente-Cuomo TL, Price LB, Keim PS, Lalwani AK. The otologic microbiome: a study of the bacterial microbiota in a pediatric patient with chronic serous otitis media using 16SrRNA gene-based pyrosequencing. Archives of Otolaryngology--Head & Neck Surgery. 137: 664-8. PMID 21768410 DOI: 10.1001/Archoto.2011.116  0.96
2011 Stewart T, Engelthaler DM, Blaney DD, Tuanyok A, Wangsness E, Smith TL, Pearson T, Komatsu KK, Keim P, Currie BJ, Levy C, Sunenshine R. Epidemiology and investigation of melioidosis, Southern Arizona. Emerging Infectious Diseases. 17: 1286-8. PMID 21762589 DOI: 10.3201/Eid1707.100661  0.96
2011 Rivarola M, Foster JT, Chan AP, Williams AL, Rice DW, Liu X, Melake-Berhan A, Huot Creasy H, Puiu D, Rosovitz MJ, Khouri HM, Beckstrom-Sternberg SM, Allan GJ, Keim P, Ravel J, et al. Castor bean organelle genome sequencing and worldwide genetic diversity analysis. Plos One. 6: e21743. PMID 21750729 DOI: 10.1371/Journal.Pone.0021743  0.96
2011 Kang Y, Norris MH, Wilcox BA, Tuanyok A, Keim PS, Hoang TT. Knockout and pullout recombineering for naturally transformable Burkholderia thailandensis and Burkholderia pseudomallei. Nature Protocols. 6: 1085-104. PMID 21738123 DOI: 10.1038/nprot.2011.346  0.96
2011 Mukhopadhyay C, Kaestli M, Vandana KE, Sushma K, Mayo M, Richardson L, Tuanyok A, Keim P, Godoy D, Spratt BG, Currie BJ. Molecular characterization of clinical Burkholderia pseudomallei isolates from India. The American Journal of Tropical Medicine and Hygiene. 85: 121-3. PMID 21734136 DOI: 10.4269/ajtmh.2011.11-0166  0.32
2011 Chanturia G, Birdsell DN, Kekelidze M, Zhgenti E, Babuadze G, Tsertsvadze N, Tsanava S, Imnadze P, Beckstrom-Sternberg SM, Beckstrom-Sternberg JS, Champion MD, Sinari S, Gyuranecz M, Farlow J, Pettus AH, ... ... Keim P, et al. Phylogeography of Francisella tularensis subspecies holarctica from the country of Georgia. Bmc Microbiology. 11: 139. PMID 21682874 DOI: 10.1186/1471-2180-11-139  0.96
2011 Waters AE, Contente-Cuomo T, Buchhagen J, Liu CM, Watson L, Pearce K, Foster JT, Bowers J, Driebe EM, Engelthaler DM, Keim PS, Price LB. Multidrug-Resistant Staphylococcus aureus in US Meat and Poultry. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 52: 1227-30. PMID 21498385 DOI: 10.1093/Cid/Cir181  0.96
2011 Baker A, Pearson T, Price EP, Dale J, Keim P, Hornstra H, Greenhill A, Padilla G, Warner J. Molecular phylogeny of Burkholderia pseudomallei from a remote region of Papua New Guinea. Plos One. 6: e18343. PMID 21483841 DOI: 10.1371/Journal.Pone.0018343  0.96
2011 Rasko DA, Worsham PL, Abshire TG, Stanley ST, Bannan JD, Wilson MR, Langham RJ, Decker RS, Jiang L, Read TD, Phillippy AM, Salzberg SL, Pop M, Van Ert MN, Kenefic LJ, ... Keim PS, et al. Bacillus anthracis comparative genome analysis in support of the Amerithrax investigation. Proceedings of the National Academy of Sciences of the United States of America. 108: 5027-32. PMID 21383169 DOI: 10.1073/Pnas.1016657108  0.96
2011 Engelthaler DM, Chiller T, Schupp JA, Colvin J, Beckstrom-Sternberg SM, Driebe EM, Moses T, Tembe W, Sinari S, Beckstrom-Sternberg JS, Christoforides A, Pearson JV, Carpten J, Keim P, Peterson A, et al. Next-generation sequencing of Coccidioides immitis isolated during cluster investigation. Emerging Infectious Diseases. 17: 227-32. PMID 21291593 DOI: 10.3201/Eid1702.100620  0.96
2011 Vogler AJ, Birdsell DN, Lee J, Vaissaire J, Doujet CL, Lapalus M, Wagner DM, Keim P. Phylogeography of Francisella tularensis ssp. holarctica in France. Letters in Applied Microbiology. 52: 177-80. PMID 21214606 DOI: 10.1111/J.1472-765X.2010.02977.X  0.96
2011 Davis TS, Hofstetter RW, Foster JT, Foote NE, Keim P. Interactions between the yeast Ogataea pini and filamentous fungi associated with the western pine beetle. Microbial Ecology. 61: 626-34. PMID 21085946 DOI: 10.1007/S00248-010-9773-8  0.96
2011 Price LB, Liu CM, Frankel YM, Melendez JH, Aziz M, Buchhagen J, Contente-Cuomo T, Engelthaler DM, Keim PS, Ravel J, Lazarus GS, Zenilman JM. Macroscale spatial variation in chronic wound microbiota: a cross-sectional study. Wound Repair and Regeneration : Official Publication of the Wound Healing Society [and] the European Tissue Repair Society. 19: 80-8. PMID 20946140 DOI: 10.1111/J.1524-475X.2010.00628.X  0.96
2011 Paxton EH, Unitt P, Sogge MK, Whitfield M, Keim P. Winter distribution of willow flycatcher subspecies Condor. 113: 608-618. DOI: 10.1525/Cond.2011.090200  0.96
2011 Schutzer SE, Budowle B, Keim PS. Microbial Forensics: Educating the Workforce and the Community Microbial Forensics. 667-680. DOI: 10.1016/B978-0-12-382006-8.00039-6  0.96
2011 Foster JT, Bull RL, Keim PS. Ricin Forensics: Comparisons to Microbial Forensics Microbial Forensics. 315-326. DOI: 10.1016/B978-0-12-382006-8.00019-0  0.96
2011 Keim PS, Budowle B, Ravel J. Microbial Forensic Investigation of the Anthrax-Letter Attacks Microbial Forensics. 15-25. DOI: 10.1016/B978-0-12-382006-8.00002-5  0.96
2011 Kaufmann AF, Keim PS. The Kameido Anthrax Incident: A Microbial Forensics Case Study Microbial Forensics. 5-13. DOI: 10.1016/B978-0-12-382006-8.00001-3  0.96
2010 Reutter D, Schutzer SE, Craft CM, Fletcher J, Fricke FL, Holowachuk SA, Johnson RC, Keim PS, Pearson JL, Sibert RW, Velsko S. Planning for exercises of chemical, biological, radiological, and nuclear (CBRN) forensic capabilities. Biosecurity and Bioterrorism : Biodefense Strategy, Practice, and Science. 8: 343-55. PMID 21142761 DOI: 10.1089/Bsp.2010.0023  0.96
2010 Bowers JR, Engelthaler DM, Ginther JL, Pearson T, Peacock SJ, Tuanyok A, Wagner DM, Currie BJ, Keim PS. BurkDiff: a real-time PCR allelic discrimination assay for Burkholderia pseudomallei and B. mallei. Plos One. 5: e15413. PMID 21103048 DOI: 10.1371/Journal.Pone.0015413  0.96
2010 Cummings CA, Bormann Chung CA, Fang R, Barker M, Brzoska P, Williamson PC, Beaudry J, Matthews M, Schupp J, Wagner DM, Birdsell D, Vogler AJ, Furtado MR, Keim P, Budowle B. Accurate, rapid and high-throughput detection of strain-specific polymorphisms in Bacillus anthracis and Yersinia pestis by next-generation sequencing. Investigative Genetics. 1: 5. PMID 21092340 DOI: 10.1186/2041-2223-1-5  0.96
2010 Greenberg DL, Busch JD, Keim P, Wagner DM. Identifying experimental surrogates for Bacillus anthracis spores: a review. Investigative Genetics. 1: 4. PMID 21092338 DOI: 10.1186/2041-2223-1-4  0.96
2010 Price EP, Matthews MA, Beaudry JA, Allred JL, Schupp JM, Birdsell DN, Pearson T, Keim P. Cost-effective interrogation of single nucleotide polymorphisms using the mismatch amplification mutation assay and capillary electrophoresis. Electrophoresis. 31: 3881-8. PMID 21064143 DOI: 10.1002/Elps.201000379  0.96
2010 Morelli G, Song Y, Mazzoni CJ, Eppinger M, Roumagnac P, Wagner DM, Feldkamp M, Kusecek B, Vogler AJ, Li Y, Cui Y, Thomson NR, Jombart T, Leblois R, Lichtner P, ... ... Keim P, et al. Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity. Nature Genetics. 42: 1140-3. PMID 21037571 DOI: 10.1038/Ng.705  0.96
2010 Chen PE, Willner KM, Butani A, Dorsey S, George M, Stewart A, Lentz SM, Cook CE, Akmal A, Price LB, Keim PS, Mateczun A, Brahmbhatt TN, Bishop-Lilly KA, Zwick ME, et al. Rapid identification of genetic modifications in Bacillus anthracis using whole genome draft sequences generated by 454 pyrosequencing. Plos One. 5: e12397. PMID 20811637 DOI: 10.1371/Journal.Pone.0012397  0.96
2010 Johansson A, Celli J, Conlan W, Elkins KL, Forsman M, Keim PS, Larsson P, Manoil C, Nano FE, Petersen JM, Sjöstedt A. Objections to the transfer of Francisella novicida to the subspecies rank of Francisella tularensis. International Journal of Systematic and Evolutionary Microbiology. 60: 1717-8; author reply. PMID 20688748 DOI: 10.1099/Ijs.0.022830-0  0.96
2010 Friggens MM, Parmenter RR, Boyden M, Ford PL, Gage K, Keim P. Flea abundance, diversity, and plague in Gunnison's prairie dogs (Cynomys gunnisoni) and their burrows in montane grasslands in northern New Mexico. Journal of Wildlife Diseases. 46: 356-67. PMID 20688629 DOI: 10.7589/0090-3558-46.2.356  0.96
2010 Brown AN, McSharry JJ, Weng Q, Driebe EM, Engelthaler DM, Sheff K, Keim PS, Nguyen J, Drusano GL. In vitro system for modeling influenza A virus resistance under drug pressure. Antimicrobial Agents and Chemotherapy. 54: 3442-50. PMID 20498316 DOI: 10.1128/Aac.01385-09  0.96
2010 Wagner DM, Runberg J, Vogler AJ, Lee J, Driebe E, Price LB, Engelthaler DM, Fricke WF, Ravel J, Keim P. No resistance plasmid in Yersinia pestis, North America. Emerging Infectious Diseases. 16: 885-7. PMID 20409397 DOI: 10.3201/Eid1605.090892  0.96
2010 Aikembayev AM, Lukhnova L, Temiraliyeva G, Meka-Mechenko T, Pazylov Y, Zakaryan S, Denissov G, Easterday WR, Van Ert MN, Keim P, Francesconi SC, Blackburn JK, Hugh-Jones M, Hadfield T. Historical distribution and molecular diversity of Bacillus anthracis, Kazakhstan. Emerging Infectious Diseases. 16: 789-96. PMID 20409368 DOI: 10.3201/Eid1605.091427  0.96
2010 Sarovich DS, Colman RE, Price EP, Chung WK, Lee J, Schupp JM, Cobble KR, Busch JD, Alexander J, Keim P, Wagner DM. Selective isolation of Yersinia pestis from plague-infected fleas. Journal of Microbiological Methods. 82: 95-7. PMID 20385178 DOI: 10.1016/J.Mimet.2010.03.019  0.96
2010 Sheff KW, York ER, Driebe EM, Barker BM, Rounsley SD, Waddell VG, Beckstrom-Sternberg SM, Beckstrom-Sternberg JS, Keim PS, Engelthaler DM. Development of a rapid, cost-effective TaqMan Real-Time PCR Assay for identification and differentiation of Coccidioides immitis and Coccidioides posadasii. Medical Mycology. 48: 466-9. PMID 20370360 DOI: 10.3109/13693780903218990  0.96
2010 Nandi T, Ong C, Singh AP, Boddey J, Atkins T, Sarkar-Tyson M, Essex-Lopresti AE, Chua HH, Pearson T, Kreisberg JF, Nilsson C, Ariyaratne P, Ronning C, Losada L, Ruan Y, ... ... Keim P, et al. A genomic survey of positive selection in Burkholderia pseudomallei provides insights into the evolution of accidental virulence. Plos Pathogens. 6: e1000845. PMID 20368977 DOI: 10.1371/Journal.Ppat.1000845  0.96
2010 Losada L, Ronning CM, DeShazer D, Woods D, Fedorova N, Kim HS, Shabalina SA, Pearson TR, Brinkac L, Tan P, Nandi T, Crabtree J, Badger J, Beckstrom-Sternberg S, Saqib M, ... ... Keim P, et al. Continuing evolution of Burkholderia mallei through genome reduction and large-scale rearrangements. Genome Biology and Evolution. 2: 102-16. PMID 20333227 DOI: 10.1093/Gbe/Evq003  0.96
2010 Price EP, Hornstra HM, Limmathurotsakul D, Max TL, Sarovich DS, Vogler AJ, Dale JL, Ginther JL, Leadem B, Colman RE, Foster JT, Tuanyok A, Wagner DM, Peacock SJ, Pearson T, ... Keim P, et al. Within-host evolution of Burkholderia pseudomallei in four cases of acute melioidosis. Plos Pathogens. 6: e1000725. PMID 20090837 DOI: 10.1371/Journal.Ppat.1000725  0.96
2010 Foster JT, Allan GJ, Chan AP, Rabinowicz PD, Ravel J, Jackson PJ, Keim P. Single nucleotide polymorphisms for assessing genetic diversity in castor bean (Ricinus communis). Bmc Plant Biology. 10: 13. PMID 20082707 DOI: 10.1186/1471-2229-10-13  0.96
2010 Price LB, Liu CM, Johnson KE, Aziz M, Lau MK, Bowers J, Ravel J, Keim PS, Serwadda D, Wawer MJ, Gray RH. The effects of circumcision on the penis microbiome. Plos One. 5: e8422. PMID 20066050 DOI: 10.1371/Journal.Pone.0008422  0.96
2010 Liu CM, Driebe EM, Schupp J, Kelley E, Nguyen JT, McSharry JJ, Weng Q, Engelthaler DM, Keim PS. Rapid quantification of single-nucleotide mutations in mixed influenza A viral populations using allele-specific mixture analysis. Journal of Virological Methods. 163: 109-15. PMID 19761797 DOI: 10.1016/J.Jviromet.2009.09.007  0.96
2010 Sheff KW, Keim PS, Engelthaler DM. Reply to Dr Wiwanitkit Medical Mycology. 48: 680. DOI: 10.3109/13693780903500046  0.96
2010 Kenefic LJ, Okinaka RT, Keim P. Population Genetics of Bacillus: Phylogeography of Anthrax in North America Bacterial Population Genetics in Infectious Disease. 167-180. DOI: 10.1002/9780470600122.ch9  0.96
2009 Schutzer SE, Keim P, Czerwinski K, Budowle B. Use of forensic methods under exigent circumstances without full validation. Science Translational Medicine. 1: 8cm7. PMID 20368183 DOI: 10.1126/Scitranslmed.3000372  0.96
2009 Hornstra H, Pearson T, Georgia S, Liguori A, Dale J, Price E, O'Neill M, Deshazer D, Muhammad G, Saqib M, Naureen A, Keim P. Molecular epidemiology of glanders, Pakistan. Emerging Infectious Diseases. 15: 2036-9. PMID 19961695 DOI: 10.3201/Eid1512.090738  0.96
2009 Pearson T, Giffard P, Beckstrom-Sternberg S, Auerbach R, Hornstra H, Tuanyok A, Price EP, Glass MB, Leadem B, Beckstrom-Sternberg JS, Allan GJ, Foster JT, Wagner DM, Okinaka RT, Sim SH, ... ... Keim P, et al. Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer. Bmc Biology. 7: 78. PMID 19922616 DOI: 10.1186/1741-7007-7-78  0.96
2009 Birdsell DN, Stewart T, Vogler AJ, Lawaczeck E, Diggs A, Sylvester TL, Buchhagen JL, Auerbach RK, Keim P, Wagner DM. Francisella tularensis subsp. novicida isolated from a human in Arizona. Bmc Research Notes. 2: 223. PMID 19895698 DOI: 10.1186/1756-0500-2-223  0.96
2009 Colman RE, Vogler AJ, Lowell JL, Gage KL, Morway C, Reynolds PJ, Ettestad P, Keim P, Kosoy MY, Wagner DM. Fine-scale identification of the most likely source of a human plague infection. Emerging Infectious Diseases. 15: 1623-5. PMID 19861057 DOI: 10.3201/Eid1510.090188  0.96
2009 Franz DR, Ehrlich SA, Casadevall A, Imperiale MJ, Keim PS. The "nuclearization" of biology is a threat to health and security. Biosecurity and Bioterrorism : Biodefense Strategy, Practice, and Science. 7: 243-4. PMID 19821746 DOI: 10.1089/Bsp.2009.0047  0.96
2009 Keim PS, Wagner DM. Humans and evolutionary and ecological forces shaped the phylogeography of recently emerged diseases. Nature Reviews. Microbiology. 7: 813-21. PMID 19820723 DOI: 10.1038/nrmicro2219  0.96
2009 Trunck LA, Propst KL, Wuthiekanun V, Tuanyok A, Beckstrom-Sternberg SM, Beckstrom-Sternberg JS, Peacock SJ, Keim P, Dow SW, Schweizer HP. Molecular basis of rare aminoglycoside susceptibility and pathogenesis of Burkholderia pseudomallei clinical isolates from Thailand. Plos Neglected Tropical Diseases. 3: e519. PMID 19771149 DOI: 10.1371/Journal.Pntd.0000519  0.96
2009 Keim P, Gruendike JM, Klevytska AM, Schupp JM, Challacombe J, Okinaka R. The genome and variation of Bacillus anthracis. Molecular Aspects of Medicine. 30: 397-405. PMID 19729033 DOI: 10.1016/J.Mam.2009.08.005  0.96
2009 Price LB, Liu CM, Melendez JH, Frankel YM, Engelthaler D, Aziz M, Bowers J, Rattray R, Ravel J, Kingsley C, Keim PS, Lazarus GS, Zenilman JM. Community analysis of chronic wound bacteria using 16S rRNA gene-based pyrosequencing: impact of diabetes and antibiotics on chronic wound microbiota. Plos One. 4: e6462. PMID 19649281 DOI: 10.1371/Journal.Pone.0006462  0.96
2009 Nguyen JT, Hoopes JD, Smee DF, Prichard MN, Driebe EM, Engelthaler DM, Le MH, Keim PS, Spence RP, Went GT. Triple combination of oseltamivir, amantadine, and ribavirin displays synergistic activity against multiple influenza virus strains in vitro. Antimicrobial Agents and Chemotherapy. 53: 4115-26. PMID 19620324 DOI: 10.1128/Aac.00476-09  0.96
2009 Larsson P, Elfsmark D, Svensson K, Wikström P, Forsman M, Brettin T, Keim P, Johansson A. Molecular evolutionary consequences of niche restriction in Francisella tularensis, a facultative intracellular pathogen. Plos Pathogens. 5: e1000472. PMID 19521508 DOI: 10.1371/Journal.Ppat.1000472  0.96
2009 Champion MD, Zeng Q, Nix EB, Nano FE, Keim P, Kodira CD, Borowsky M, Young S, Koehrsen M, Engels R, Pearson M, Howarth C, Larson L, White J, Alvarado L, et al. Comparative genomic characterization of Francisella tularensis strains belonging to low and high virulence subspecies. Plos Pathogens. 5: e1000459. PMID 19478886 DOI: 10.1371/Journal.Ppat.1000459  0.96
2009 Pearson T, Okinaka RT, Foster JT, Keim P. Phylogenetic understanding of clonal populations in an era of whole genome sequencing. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 9: 1010-9. PMID 19477301 DOI: 10.1016/J.Meegid.2009.05.014  0.96
2009 Tiller RV, De BK, Boshra M, Huynh LY, Van Ert MN, Wagner DM, Klena J, Mohsen TS, El-Shafie SS, Keim P, Hoffmaster AR, Wilkins PP, Pimentel G. Comparison of two multiple-locus variable-number tandem-repeat analysis methods for molecular strain typing of human Brucella melitensis isolates from the Middle East. Journal of Clinical Microbiology. 47: 2226-31. PMID 19439543 DOI: 10.1128/Jcm.02362-08  0.96
2009 Simonson TS, Okinaka RT, Wang B, Easterday WR, Huynh L, U'Ren JM, Dukerich M, Zanecki SR, Kenefic LJ, Beaudry J, Schupp JM, Pearson T, Wagner DM, Hoffmaster A, Ravel J, ... Keim P, et al. Bacillus anthracis in China and its relationship to worldwide lineages. Bmc Microbiology. 9: 71. PMID 19368722 DOI: 10.1186/1471-2180-9-71  0.96
2009 Kenefic LJ, Pearson T, Okinaka RT, Schupp JM, Wagner DM, Hoffmaster AR, Trim CB, Trim CP, Chung WK, Beaudry JA, Jiang L, Gajer P, Foster JT, Mead JI, Ravel J, ... Keim P, et al. Pre-Columbian origins for North American anthrax. Plos One. 4: e4813. PMID 19283072 DOI: 10.1371/Journal.Pone.0004813  0.96
2009 Vogler AJ, Birdsell D, Price LB, Bowers JR, Beckstrom-Sternberg SM, Auerbach RK, Beckstrom-Sternberg JS, Johansson A, Clare A, Buchhagen JL, Petersen JM, Pearson T, Vaissaire J, Dempsey MP, Foxall P, ... ... Keim P, et al. Phylogeography of Francisella tularensis: global expansion of a highly fit clone. Journal of Bacteriology. 191: 2474-84. PMID 19251856 DOI: 10.1128/Jb.01786-08  0.96
2009 Foster JT, Beckstrom-Sternberg SM, Pearson T, Beckstrom-Sternberg JS, Chain PS, Roberto FF, Hnath J, Brettin T, Keim P. Whole-genome-based phylogeny and divergence of the genus Brucella. Journal of Bacteriology. 191: 2864-70. PMID 19201792 DOI: 10.1128/Jb.01581-08  0.96
2009 Currie BJ, Haslem A, Pearson T, Hornstra H, Leadem B, Mayo M, Gal D, Ward L, Godoy D, Spratt BG, Keim P. Identification of melioidosis outbreak by multilocus variable number tandem repeat analysis. Emerging Infectious Diseases. 15: 169-74. PMID 19193259 DOI: 10.3201/Eid1502.081036  0.96
2009 Vogler AJ, Birdsell D, Wagner DM, Keim P. An optimized, multiplexed multi-locus variable-number tandem repeat analysis system for genotyping Francisella tularensis. Letters in Applied Microbiology. 48: 140-4. PMID 19018964 DOI: 10.1111/J.1472-765X.2008.02484.X  0.96
2009 Ravel J, Jiang L, Stanley ST, Wilson MR, Decker RS, Read TD, Worsham P, Keim PS, Salzberg SL, Fraser-Liggett CM, Rasko DA. The complete genome sequence of Bacillus anthracis Ames "Ancestor". Journal of Bacteriology. 191: 445-6. PMID 18952800 DOI: 10.1128/Jb.01347-08  0.96
2008 Casadevall A, Ehrlich SA, Franz DR, Imperiale MJ, Keim PS. Biodefense research: a win-win challenge. Biosecurity and Bioterrorism : Biodefense Strategy, Practice, and Science. 6: 291-2. PMID 19090664 DOI: 10.1089/Bsp.2008.1114  0.96
2008 Tuanyok A, Leadem BR, Auerbach RK, Beckstrom-Sternberg SM, Beckstrom-Sternberg JS, Mayo M, Wuthiekanun V, Brettin TS, Nierman WC, Peacock SJ, Currie BJ, Wagner DM, Keim P. Genomic islands from five strains of Burkholderia pseudomallei. Bmc Genomics. 9: 566. PMID 19038032 DOI: 10.1186/1471-2164-9-566  0.96
2008 Kenefic LJ, Pearson T, Okinaka RT, Chung WK, Max T, Trim CP, Beaudry JA, Schupp JM, Van Ert MN, Marston CK, Gutierrez K, Swinford AK, Hoffmaster AR, Keim P. Texas isolates closely related to Bacillus anthracis Ames. Emerging Infectious Diseases. 14: 1494-6. PMID 18760033 DOI: 10.3201/Eid1409.080076  0.96
2008 Keim P, Pearson T, Okinaka R. Microbial forensics: DNA fingerprinting of Bacillus anthracis (anthrax). Analytical Chemistry. 80: 4791-9. PMID 18609763 DOI: 10.1021/Ac086131G  0.96
2008 Allender CJ, Clancy KM, Degomez TE, McMillin JD, Woolbright SA, Keim P, Wagner DM. Lack of genetic differentiation in aggressive and secondary bark beetles (Coleoptera: Curculionidae, Scolytinae) from Arizona. Environmental Entomology. 37: 817-24. PMID 18559189 DOI: 10.1603/0046-225X(2008)37[817:Logdia]2.0.Co;2  0.96
2008 Okinaka RT, Henrie M, Hill KK, Lowery KS, Van Ert M, Pearson T, Schupp J, Kenefic L, Beaudry J, Hofstadler SA, Jackson PJ, Keim P. Single nucleotide polymorphism typing of Bacillus anthracis from Sverdlovsk tissue. Emerging Infectious Diseases. 14: 653-6. PMID 18394287 DOI: 10.3201/Eid1404.070984  0.96
2008 Kenefic LJ, Beaudry J, Trim C, Daly R, Parmar R, Zanecki S, Huynh L, Van Ert MN, Wagner DM, Graham T, Keim P. High resolution genotyping of Bacillus anthracis outbreak strains using four highly mutable single nucleotide repeat markers. Letters in Applied Microbiology. 46: 600-3. PMID 18363651 DOI: 10.1111/J.1472-765X.2008.02353.X  0.96
2008 Vogler AJ, Driebe EM, Lee J, Auerbach RK, Allender CJ, Stanley M, Kubota K, Andersen GL, Radnedge L, Worsham PL, Keim P, Wagner DM. Assays for the rapid and specific identification of North American Yersinia pestis and the common laboratory strain CO92. Biotechniques. 44: 201, 203-4, 207. PMID 18330347 DOI: 10.2144/000112815  0.96
2008 Kenefic LJ, Beaudry J, Trim C, Huynh L, Zanecki S, Matthews M, Schupp J, Van Ert M, Keim P. A high resolution four-locus multiplex single nucleotide repeat (SNR) genotyping system in Bacillus anthracis. Journal of Microbiological Methods. 73: 269-72. PMID 18237793 DOI: 10.1016/J.Mimet.2007.11.014  0.96
2008 Sinclair R, Boone SA, Greenberg D, Keim P, Gerba CP. Persistence of category A select agents in the environment. Applied and Environmental Microbiology. 74: 555-63. PMID 18065629 DOI: 10.1128/Aem.02167-07  0.96
2008 Foster JT, Okinaka RT, Svensson R, Shaw K, De BK, Robison RA, Probert WS, Kenefic LJ, Brown WD, Keim P. Real-time PCR assays of single-nucleotide polymorphisms defining the major Brucella clades. Journal of Clinical Microbiology. 46: 296-301. PMID 18032628 DOI: 10.1128/Jcm.01496-07  0.96
2007 Tuanyok A, Auerbach RK, Brettin TS, Bruce DC, Munk AC, Detter JC, Pearson T, Hornstra H, Sermswan RW, Wuthiekanun V, Peacock SJ, Currie BJ, Keim P, Wagner DM. A horizontal gene transfer event defines two distinct groups within Burkholderia pseudomallei that have dissimilar geographic distributions. Journal of Bacteriology. 189: 9044-9. PMID 17933898 DOI: 10.1128/Jb.01264-07  0.96
2007 Beckstrom-Sternberg SM, Auerbach RK, Godbole S, Pearson JV, Beckstrom-Sternberg JS, Deng Z, Munk C, Kubota K, Zhou Y, Bruce D, Noronha J, Scheuermann RH, Wang A, Wei X, Wang J, ... ... Keim PS, et al. Complete genomic characterization of a pathogenic A.II strain of Francisella tularensis subspecies tularensis. Plos One. 2: e947. PMID 17895988 DOI: 10.1371/Journal.Pone.0000947  0.96
2007 Dempsey MP, Dobson M, Zhang C, Zhang M, Lion C, Gutiérrez-Martín CB, Iwen PC, Fey PD, Olson ME, Niemeyer D, Francesconi S, Crawford R, Stanley M, Rhodes J, Wagner DM, ... ... Keim P, et al. Genomic deletion marking an emerging subclone of Francisella tularensis subsp. holarctica in France and the Iberian Peninsula. Applied and Environmental Microbiology. 73: 7465-70. PMID 17890329 DOI: 10.1128/Aem.00646-07  0.96
2007 U'ren JM, Hornstra H, Pearson T, Schupp JM, Leadem B, Georgia S, Sermswan RW, Keim P. Fine-scale genetic diversity among Burkholderia pseudomallei soil isolates in northeast Thailand. Applied and Environmental Microbiology. 73: 6678-81. PMID 17720819 DOI: 10.1128/Aem.00986-07  0.96
2007 Auerbach RK, Tuanyok A, Probert WS, Kenefic L, Vogler AJ, Bruce DC, Munk C, Brettin TS, Eppinger M, Ravel J, Wagner DM, Keim P. Yersinia pestis evolution on a small timescale: comparison of whole genome sequences from North America. Plos One. 2: e770. PMID 17712418 DOI: 10.1371/Journal.Pone.0000770  0.96
2007 Budowle B, Beaudry JA, Barnaby NG, Giusti AM, Bannan JD, Keim P. Role of law enforcement response and microbial forensics in investigation of bioterrorism. Croatian Medical Journal. 48: 437-49. PMID 17696298  0.36
2007 Lee K, Costerton JW, Ravel J, Auerbach RK, Wagner DM, Keim P, Leid JG. Phenotypic and functional characterization of Bacillus anthracis biofilms. Microbiology (Reading, England). 153: 1693-701. PMID 17526827 DOI: 10.1099/Mic.0.2006/003376-0  0.96
2007 Van Ert MN, Easterday WR, Huynh LY, Okinaka RT, Hugh-Jones ME, Ravel J, Zanecki SR, Pearson T, Simonson TS, U'Ren JM, Kachur SM, Leadem-Dougherty RR, Rhoton SD, Zinser G, Farlow J, ... ... Keim P, et al. Global genetic population structure of Bacillus anthracis. Plos One. 2: e461. PMID 17520020 DOI: 10.1371/Journal.Pone.0000461  0.96
2007 Keim P, Johansson A, Wagner DM. Molecular epidemiology, evolution, and ecology of Francisella. Annals of the New York Academy of Sciences. 1105: 30-66. PMID 17435120 DOI: 10.1196/Annals.1409.011  0.96
2007 U'Ren JM, Schupp JM, Pearson T, Hornstra H, Friedman CL, Smith KL, Daugherty RR, Rhoton SD, Leadem B, Georgia S, Cardon M, Huynh LY, DeShazer D, Harvey SP, Robison R, ... ... Keim P, et al. Tandem repeat regions within the Burkholderia pseudomallei genome and their application for high resolution genotyping. Bmc Microbiology. 7: 23. PMID 17397553 DOI: 10.1186/1471-2180-7-23  0.96
2007 Challacombe JF, Altherr MR, Xie G, Bhotika SS, Brown N, Bruce D, Campbell CS, Campbell ML, Chen J, Chertkov O, Cleland C, Dimitrijevic M, Doggett NA, Fawcett JJ, Glavina T, ... ... Keim P, et al. The complete genome sequence of Bacillus thuringiensis Al Hakam. Journal of Bacteriology. 189: 3680-1. PMID 17337577 DOI: 10.1128/Jb.00241-07  0.96
2007 Touchman JW, Wagner DM, Hao J, Mastrian SD, Shah MK, Vogler AJ, Allender CJ, Clark EA, Benitez DS, Youngkin DJ, Girard JM, Auerbach RK, Beckstrom-Sternberg SM, Keim P. A North American Yersinia pestis draft genome sequence: SNPs and phylogenetic analysis. Plos One. 2: e220. PMID 17311096 DOI: 10.1371/Journal.Pone.0000220  0.96
2007 Pearson T, U'Ren JM, Schupp JM, Allan GJ, Foster PG, Mayo MJ, Gal D, Choy JL, Daugherty RL, Kachur S, Friedman CL, Leadem B, Georgia S, Hornstra H, Vogler AJ, ... ... Keim P, et al. VNTR analysis of selected outbreaks of Burkholderia pseudomallei in Australia. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 7: 416-23. PMID 17258514 DOI: 10.1016/J.Meegid.2006.12.002  0.96
2007 Vogler AJ, Keys CE, Allender C, Bailey I, Girard J, Pearson T, Smith KL, Wagner DM, Keim P. Mutations, mutation rates, and evolution at the hypervariable VNTR loci of Yersinia pestis. Mutation Research. 616: 145-58. PMID 17161849 DOI: 10.1016/J.Mrfmmm.2006.11.007  0.96
2007 Van Ert MN, Easterday WR, Simonson TS, U'Ren JM, Pearson T, Kenefic LJ, Busch JD, Huynh LY, Dukerich M, Trim CB, Beaudry J, Welty-Bernard A, Read T, Fraser CM, Ravel J, ... Keim P, et al. Strain-specific single-nucleotide polymorphism assays for the Bacillus anthracis Ames strain. Journal of Clinical Microbiology. 45: 47-53. PMID 17093023 DOI: 10.1128/Jcm.01233-06  0.96
2006 Okinaka R, Pearson T, Keim P. Anthrax, but not Bacillus anthracis? Plos Pathogens. 2: e122. PMID 17121463 DOI: 10.1371/journal.ppat.0020122  0.96
2006 Vogler AJ, Keys C, Nemoto Y, Colman RE, Jay Z, Keim P. Effect of repeat copy number on variable-number tandem repeat mutations in Escherichia coli O157:H7. Journal of Bacteriology. 188: 4253-63. PMID 16740932 DOI: 10.1128/Jb.00001-06  0.96
2006 Keim P, Mock M, Young J, Koehler TM. The International Bacillus anthracis, B. cereus, and B. thuringiensis Conference, "Bacillus-ACT05". Journal of Bacteriology. 188: 3433-41. PMID 16672596 DOI: 10.1128/Jb.188.10.3433-3441.2006  0.96
2006 LeRoy CJ, Whitham TG, Keim P, Marks JC. Plant genes link forests and streams. Ecology. 87: 255-61. PMID 16634316 DOI: 10.1890/05-0159  0.96
2006 Han CS, Xie G, Challacombe JF, Altherr MR, Bhotika SS, Brown N, Bruce D, Campbell CS, Campbell ML, Chen J, Chertkov O, Cleland C, Dimitrijevic M, Doggett NA, Fawcett JJ, ... ... Keim P, et al. Pathogenomic sequence analysis of Bacillus cereus and Bacillus thuringiensis isolates closely related to Bacillus anthracis. Journal of Bacteriology. 188: 3382-90. PMID 16621833 DOI: 10.1128/Jb.188.9.3382-3390.2006  0.96
2006 Pearson T, Whitfield MJ, Theimer TC, Keim P. Polygyny and extra-pair paternity in a population of Southwestern Willow Flycatchers Condor. 108: 571-578.  0.96
2005 Farlow J, Wagner DM, Dukerich M, Stanley M, Chu M, Kubota K, Petersen J, Keim P. Francisella tularensis in the United States. Emerging Infectious Diseases. 11: 1835-41. PMID 16485467 DOI: 10.3201/Eid1112.050728  0.96
2005 U'Ren JM, Van Ert MN, Schupp JM, Easterday WR, Simonson TS, Okinaka RT, Pearson T, Keim P. Use of a real-time PCR TaqMan assay for rapid identification and differentiation of Burkholderia pseudomallei and Burkholderia mallei. Journal of Clinical Microbiology. 43: 5771-4. PMID 16272516 DOI: 10.1128/JCM.43.11.5771-5774.2005  0.96
2005 Barns SM, Grow CC, Okinaka RT, Keim P, Kuske CR. Detection of diverse new Francisella-like bacteria in environmental samples. Applied and Environmental Microbiology. 71: 5494-500. PMID 16151142 DOI: 10.1128/AEM.71.9.5494-5500.2005  0.96
2005 Fasanella A, Van Ert M, Altamura SA, Garofolo G, Buonavoglia C, Leori G, Huynh L, Zanecki S, Keim P. Molecular diversity of Bacillus anthracis in Italy. Journal of Clinical Microbiology. 43: 3398-401. PMID 16000465 DOI: 10.1128/Jcm.43.7.3398-3401.2005  0.96
2005 Easterday WR, Van Ert MN, Zanecki S, Keim P. Specific detection of bacillus anthracis using a TaqMan mismatch amplification mutation assay. Biotechniques. 38: 731-5. PMID 15945372 DOI: 10.2144/05385St03  0.96
2005 McRae BH, Beier P, Dewald LE, Huynh LY, Keim P. Habitat barriers limit gene flow and illuminate historical events in a wide-ranging carnivore, the American puma. Molecular Ecology. 14: 1965-77. PMID 15910319 DOI: 10.1111/J.1365-294X.2005.02571.X  0.96
2005 Easterday WR, Van Ert MN, Simonson TS, Wagner DM, Kenefic LJ, Allender CJ, Keim P. Use of single nucleotide polymorphisms in the plcR gene for specific identification of Bacillus anthracis. Journal of Clinical Microbiology. 43: 1995-7. PMID 15815042 DOI: 10.1128/Jcm.43.4.1995-1997.2005  0.96
2005 Cheung DT, Kam KM, Hau KL, Au TK, Marston CK, Gee JE, Popovic T, Van Ert MN, Kenefic L, Keim P, Hoffmaster AR. Characterization of a Bacillus anthracis isolate causing a rare case of fatal anthrax in a 2-year-old boy from Hong Kong. Journal of Clinical Microbiology. 43: 1992-4. PMID 15815041 DOI: 10.1128/Jcm.43.4.1992-1994.2005  0.96
2005 Keys C, Kemper S, Keim P. Highly diverse variable number tandem repeat loci in the E. coli O157:H7 and O55:H7 genomes for high-resolution molecular typing. Journal of Applied Microbiology. 98: 928-40. PMID 15752340 DOI: 10.1111/J.1365-2672.2004.02532.X  0.96
2005 Lowell JL, Wagner DM, Atshabar B, Antolin MF, Vogler AJ, Keim P, Chu MC, Gage KL. Identifying sources of human exposure to plague. Journal of Clinical Microbiology. 43: 650-6. PMID 15695659 DOI: 10.1128/Jcm.43.2.650-656.2005  0.96
2005 Busch JD, Katzner TE, Bragin E, Keim P. Tetranucleotide microsatellites for aquila and haliaeetus eagles Molecular Ecology Notes. 5: 39-41. DOI: 10.1111/J.1471-8286.2004.00823.X  0.96
2005 Lenski RE, Keim P. Population Genetics of Bacteria in a Forensic Context Microbial Forensics. 355-369. DOI: 10.1016/B978-012088483-4/50019-6  0.96
2005 Keim P. Bacterial Pathogens Microbial Forensics. 99-107. DOI: 10.1016/B978-012088483-4/50008-1  0.96
2004 Achtman M, Morelli G, Zhu P, Wirth T, Diehl I, Kusecek B, Vogler AJ, Wagner DM, Allender CJ, Easterday WR, Chenal-Francisque V, Worsham P, Thomson NR, Parkhill J, Lindler LE, ... ... Keim P, et al. Microevolution and history of the plague bacillus, Yersinia pestis. Proceedings of the National Academy of Sciences of the United States of America. 101: 17837-42. PMID 15598742 DOI: 10.1073/Pnas.0408026101  0.96
2004 Allender CJ, Easterday WR, Van Ert MN, Wagner DM, Keim P. High-throughput extraction of arthropod vector and pathogen DNA using bead milling. Biotechniques. 37: 730, 732, 734. PMID 15560126 DOI: 10.2144/04375Bm03  0.96
2004 Van Ert MN, Hofstadler SA, Jiang Y, Busch JD, Wagner DM, Drader JJ, Ecker DJ, Hannis JC, Huynh LY, Schupp JM, Simonson TS, Keim P. Mass spectrometry provides accurate characterization of two genetic marker types in Bacillus anthracis. Biotechniques. 37: 642-4, 646, 648 pass. PMID 15517976 DOI: 10.2144/04374Rr01  0.96
2004 DeWoody JA, Schupp J, Kenefic L, Busch J, Murfitt L, Keim P. Universal method for producing ROX-labeled size standards suitable for automated genotyping. Biotechniques. 37: 348, 350, 352. PMID 15470886 DOI: 10.2144/04373Bm02  0.96
2004 Valenzuela RK, Forbes SN, Keim P, Service PM. Quantitative trait loci affecting life span in replicated populations of Drosophila melanogaster. II. Response to selection. Genetics. 168: 313-24. PMID 15454545 DOI: 10.1534/Genetics.103.023291  0.96
2004 Forbes SN, Valenzuela RK, Keim P, Service PM. Quantitative trait loci affecting life span in replicated populations of Drosophila melanogaster. I. Composite interval mapping. Genetics. 168: 301-11. PMID 15454544 DOI: 10.1534/Genetics.103.023218  0.96
2004 Keim P, Van Ert MN, Pearson T, Vogler AJ, Huynh LY, Wagner DM. Anthrax molecular epidemiology and forensics: using the appropriate marker for different evolutionary scales. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 4: 205-13. PMID 15450200 DOI: 10.1016/J.Meegid.2004.02.005  0.96
2004 Pearson T, Busch JD, Ravel J, Read TD, Rhoton SD, U'Ren JM, Simonson TS, Kachur SM, Leadem RR, Cardon ML, Van Ert MN, Huynh LY, Fraser CM, Keim P. Phylogenetic discovery bias in Bacillus anthracis using single-nucleotide polymorphisms from whole-genome sequencing. Proceedings of the National Academy of Sciences of the United States of America. 101: 13536-41. PMID 15347815 DOI: 10.1073/Pnas.0403844101  0.96
2004 Girard JM, Wagner DM, Vogler AJ, Keys C, Allender CJ, Drickamer LC, Keim P. Differential plague-transmission dynamics determine Yersinia pestis population genetic structure on local, regional, and global scales. Proceedings of the National Academy of Sciences of the United States of America. 101: 8408-13. PMID 15173603 DOI: 10.1073/Pnas.0401561101  0.96
2004 Fischer DG, Hart SC, Whitham TG, Martinsen GD, Keim P. Ecosystem implications of genetic variation in water-use of a dominant riparian tree. Oecologia. 139: 288-97. PMID 14767756 DOI: 10.1007/S00442-004-1505-7  0.96
2002 Keim P, Smith KL. Bacillus anthracis evolution and epidemiology. Current Topics in Microbiology and Immunology. 271: 21-32. PMID 12224522 DOI: 10.1007/978-3-662-05767-4_2  0.96
2002 Granger C, Coryell V, Khanna A, Keim P, Vodkin L, Shoemaker RC. Identification, structure, and differential expression of members of a BURP domain containing protein family in soybean. Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 45: 693-701. PMID 12175072 DOI: 10.1139/G02-032  0.96
2002 Lindstedt SL, Reich TE, Keim P, LaStayo PC. Do muscles function as adaptable locomotor springs? The Journal of Experimental Biology. 205: 2211-6. PMID 12110655  0.96
2002 Mock KE, Theimer TC, Rhodes OE, Greenberg DL, Keim P. Genetic variation across the historical range of the wild turkey (Meleagris gallopavo). Molecular Ecology. 11: 643-57. PMID 11972754 DOI: 10.1046/J.1365-294X.2002.01467.X  0.96
2002 Vogler AJ, Busch JD, Percy-Fine S, Tipton-Hunton C, Smith KL, Keim P. Molecular analysis of rifampin resistance in Bacillus anthracis and Bacillus cereus. Antimicrobial Agents and Chemotherapy. 46: 511-3. PMID 11796364 DOI: 10.1128/Aac.46.2.511-513.2002  0.96
2002 Paxton EH, Sogge MK, McCarthey TD, Keim P. Nestling sex ratio in the Southwestern Willow Flycatcher Condor. 104: 877-881. DOI: 10.1650/0010-5422(2002)104[0877:Nsrits]2.0.Co;2  0.96
2002 Miller MP, Blinn DW, Keim P. Correlations between observed dispersal capabilities and patterns of genetic differentiation in populations of four aquatic insect species from the Arizona White Mountains, U.S.A Freshwater Biology. 47: 1660-1673. DOI: 10.1046/J.1365-2427.2002.00911.X  0.96
2001 Keim P, Smith KL, Keys C, Takahashi H, Kurata T, Kaufmann A. Molecular investigation of the Aum Shinrikyo anthrax release in Kameido, Japan. Journal of Clinical Microbiology. 39: 4566-7. PMID 11724885 DOI: 10.1128/Jcm.39.12.4566-4567.2001  0.96
2001 Farlow J, Smith KL, Wong J, Abrams M, Lytle M, Keim P. Francisella tularensis strain typing using multiple-locus, variable-number tandem repeat analysis. Journal of Clinical Microbiology. 39: 3186-92. PMID 11526148 DOI: 10.1128/Jcm.39.9.3186-3192.2001  0.96
2001 Klevytska AM, Price LB, Schupp JM, Worsham PL, Wong J, Keim P. Identification and characterization of variable-number tandem repeats in the Yersinia pestis genome. Journal of Clinical Microbiology. 39: 3179-85. PMID 11526147 DOI: 10.1128/Jcm.39.9.3179-3185.2001  0.96
2001 Martinsen GD, Whitham TG, Turek RJ, Keim P. Hybrid populations selectively filter gene introgression between species. Evolution; International Journal of Organic Evolution. 55: 1325-35. PMID 11525457 DOI: 10.1111/J.0014-3820.2001.Tb00655.X  0.96
2001 Young WP, Ostberg CO, Keim P, Thorgaard GH. Genetic characterization of hybridization and introgression between anadromous rainbow trout (oncorhynchus mykiss irideus) and coastal cutthroat trout (o. clarki clarki) Molecular Ecology. 10: 921-930. PMID 11348501 DOI: 10.1046/J.1365-294X.2001.01247.X  0.96
2000 Smith KL, DeVos V, Bryden H, Price LB, Hugh-Jones ME, Keim P. Bacillus anthracis diversity in Kruger National Park. Journal of Clinical Microbiology. 38: 3780-4. PMID 11015402 DOI: 10.1128/Jcm.38.10.3780-3784.2000  0.96
2000 Ferreira AR, Foutz KR, Keim P. Soybean genetic map of RAPD markers assigned to an existing scaffold RFLP map Journal of Heredity. 91: 392-396. PMID 10994706  0.96
2000 Schupp JM, Klevytska AM, Zinser G, Price LB, Keim P. vrrB, a hypervariable open reading frame in Bacillus anthracis. Journal of Bacteriology. 182: 3989-97. PMID 10869077 DOI: 10.1128/Jb.182.14.3989-3997.2000  0.96
2000 Busch JD, Miller MP, Paxton EH, Sogge MK, Keim P. Genetic variation in the endangered Southwestern Willow Flycatcher Auk. 117: 586-595. DOI: 10.1642/0004-8038(2000)117[0586:Gvites]2.0.Co;2  0.96
2000 Miller MP, Stevens LE, Busch JD, Sorensen JA, Keim P. Amplified fragment length polymorphism and mitochondrial sequence data detect genetic differentiation and relationships in endangered southwestern U.S.A. ambersnails (Oxyloma spp.) Canadian Journal of Zoology. 78: 1845-1854. DOI: 10.1139/Cjz-78-10-1845  0.96
1999 Jackson PJ, Hill KK, Laker MT, Ticknor LO, Keim P. Genetic comparison of Bacillus anthracis and its close relatives using amplified fragment length polymorphism and polymerase chain reaction analysis. Journal of Applied Microbiology. 87: 263-9. PMID 10475963 DOI: 10.1046/J.1365-2672.1999.00884.X  0.96
1999 Schupp JM, Price LB, Klevytska A, Keim P. Internal and flanking sequence from AFLP fragments using ligation- mediated suppression PCR Biotechniques. 26: 905-912. PMID 10337484 DOI: 10.2144/99265St04  0.96
1999 Price LB, Hugh-Jones M, Jackson PJ, Keim P. Genetic diversity in the protective antigen gene of Bacillus anthracis. Journal of Bacteriology. 181: 2358-62. PMID 10197996 DOI: 10.1128/Jb.181.8.2358-2362.1999  0.96
1999 Miller MP, Kimberling DN, Keim P. Re-analysis of genetic structure among populations of Rana pipiens in Arizona and Utah Southwestern Naturalist. 44: 527-530. DOI: 10.2307/3672355  0.96
1999 Young WP, Schupp JM, Keim P. DNA methylation and AFLP marker distribution in the soybean genome Theoretical and Applied Genetics. 99: 785-792. DOI: 10.1007/S001220051297  0.96
1999 Coryell VH, Jessen H, Schupp JM, Webb D, Keim P. Allele-specific hybridization markers for soybean Theoretical and Applied Genetics. 98: 690-696. DOI: 10.1007/S001220051122  0.96
1999 Govedich FR, Blinn DW, Hevly RH, Keim PS. Cryptic radiation in erpobdellid leeches in xeric landscapes: A molecular analysis of population differentiation Canadian Journal of Zoology. 77: 52-57.  0.96
1998 Young WP, Wheeler PA, Coryell VH, Keim P, Thorgaard GH. A detailed linkage map of rainbow trout produced using doubled haploids. Genetics. 148: 839-50. PMID 9504929  0.96
1998 Theimer TC, Keim P. Phylogenetic relationships of peccaries based on mitochondrial cytochrome B DNA sequences Journal of Mammalogy. 79: 566-572. DOI: 10.2307/1382987  0.96
1998 Gehring CA, Theimer TC, Whitham TG, Keim P. Ectomycorrhizal fungal community structure of pinyon pines growing in two environmental extremes Ecology. 79: 1562-1572. DOI: 10.1890/0012-9658(1998)079[1562:Efcsop]2.0.Co;2  0.96
1998 Thomas EP, Blinn DW, Keim P. Do xeric landscapes increase genetic divergence in aquatic ecosystems? Freshwater Biology. 40: 587-593. DOI: 10.1046/j.1365-2427.1998.00357.x  0.96
1998 Travis SE, Ritland K, Whitham TG, Keim P. A genetic linkage map of pinyon pine (Pinus edulis) based on amplified fragment length polymorphisms Theoretical and Applied Genetics. 97: 871-880. DOI: 10.1007/S001220050967  0.96
1998 Govedich FR, Blinn DW, Keim P, Davies RW. Phylogenetic relationships of three genera of Erpobdellidae (Hirudinoidea), with a description of a new genus, Motobdella, and species, Motobdella sedonensis Canadian Journal of Zoology. 76: 2164-2171.  0.96
1997 Travis SE, Slobodchikoff CN, Keim P. DNA fingerprinting reveals low genetic diversity in Gunnison's prairie dog (Cynomys gunnisoni) Journal of Mammalogy. 78: 725-732. DOI: 10.2307/1382931  0.96
1997 Ferreira AR, Keim P. Genetic Mapping of Soybean [Glycine max (L.) Merr.] Using Random Amplified Polymorphic DNA (RAPD) Plant Molecular Biology Reporter. 15: 335-354. DOI: 10.1023/A:1007474913960  0.96
1997 Thomas PE, Blinn DW, Keim P. Genetic and behavioural divergence among desert spring amphipod populations Freshwater Biology. 38: 137-143.  0.96
1996 Travis SE, Maschinski J, Keim P. An analysis of genetic variation in Astragalus cremnophylax var. cremnophylax, a critically endangered plant, using AFLP markers Molecular Ecology. 5: 735-745. PMID 8981766  0.96
1996 Zhu T, Shi L, Funke RP, Gresshoff PM, Keim P. Characterization and application of soybean YACs to molecular cytogenetics Molecular and General Genetics. 252: 483-488. PMID 8879250 DOI: 10.1007/Bf02173014  0.96
1996 Kimberling DN, Ferreira AR, Shuster SM, Keim P. RAPD marker estimation of genetic structure among isolated northern leopard frog populations in the south-western USA. Molecular Ecology. 5: 521-9. PMID 8794561 DOI: 10.1111/J.1365-294X.1996.Tb00344.X  0.96
1996 Shi L, Zhu T, Morgante M, Rafalski JA, Keim P. Soybean chromosome painting: A strategy for somatic cytogenetics Journal of Heredity. 87: 308-313. PMID 8776877 DOI: 10.1093/OXFORDJOURNALS.JHERED.A023004  0.96
1996 Shi L, Zhu T, Lloyd Mogensen H, Keim P. Sperm identification in maize by fluorescence in situ hybridization Plant Cell. 8: 815-821. DOI: 10.1105/Tpc.8.5.815  0.96
1996 Shi L, Zhu T, Keim P. Ribosomal RNA genes in soybean and common bean: Chromosomal organization, expression, and evolution Theoretical and Applied Genetics. 93: 136-141. DOI: 10.1007/Bf00225738  0.96
1996 Travis SE, Slobodchikoff CN, Keim P. Social assemblages and mating relationships in prairie dogs: A DNA fingerprint analysis Behavioral Ecology. 7: 95-100.  0.96
1996 Danna KJ, Workman R, Coryell V, Keim P. 5S rRNA genes in tribe Phaseoleae: Array size, number, and dynamics Genome. 39: 445-455.  0.96
1995 Vahedian M, Shi L, Zhu T, Okimoto R, Danna K, Keim P. Genomic organization and evolution of the soybean SB92 satellite sequence Plant Molecular Biology. 29: 857-862. PMID 8541510 DOI: 10.1007/BF00041174  0.96
1995 Schupp JM, Travis SE, Price LB, Shand RF, Keim P. Rapid bacterial permeabilization reagent useful for enzyme assays Biotechniques. 19: 18-20. PMID 7669288  0.96
1995 Travis SE, Keim P. Differentiating individuals and populations of mule deer using DNA Journal of Wildlife Management. 59: 824-831. DOI: 10.2307/3801963  0.96
1995 Travis SE, Slobodchikoff CN, Keim P. Ecological and demographic effects on intraspecific variation in the social system of prairie dogs Ecology. 76: 1794-1803. DOI: 10.2307/1940711  0.96
1995 Zhu T, Shi L, Keim P. Detection by in-situ fluorescence of short, single-copy sequences of chromosomal DNA Plant Molecular Biology Reporter. 13: 270-277. DOI: 10.1007/BF02670905  0.96
1995 Christensen KM, Whitham TG, Keim P. Herbivory and tree mortality across a pinyon pine hybrid zone Oecologia. 101: 29-36. DOI: 10.1007/BF00328896  0.96
1995 Diers BW, Keim P, Fehr WR, Shoemaker RC. RFLP analysis of soybean seed protein and oil content Theoretical and Applied Genetics. 83: 608-612. DOI: 10.1007/Bf00226905  0.96
1995 Zhu T, Shi L, Doyle JJ, Keim P. A single nuclear locus phylogeny of soybean based on DNA sequence Theoretical and Applied Genetics. 90: 991-999. DOI: 10.1007/Bf00222912  0.96
1994 Sobral BW, Braga DP, Lahood ES, Keim P. Phylogenetic analysis of chloroplast restriction enzyme site mutations in the Saccharinae Griseb. subtribe of the Andropogoneae Dumort. tribe. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 87: 843-53. PMID 24190471 DOI: 10.1007/BF00221137  0.96
1994 Zhu T, Schupp JM, Oliphant A, Keim P. Hypomethylated sequences: Characterization of the duplicate soybean genome Mgg Molecular &Amp; General Genetics. 244: 638-645. PMID 7969033 DOI: 10.1007/Bf00282754  0.96
1994 Thomas EP, Blinn DW, Keim P. A test of an allopatric speciation model for congeneric amphipods in an isolated aquatic ecosystem Journal of the North American Benthological Society. 13: 100-109. DOI: 10.2307/1467270  0.96
1994 Theimer TC, Keim P. Geographic patterns of mitochondrial-DNA variation in collared peccaries Journal of Mammalogy. 75: 121-128. DOI: 10.2307/1382243  0.96
1994 Floate KD, Whitham TG, Keim P. Morphological versus genetic markers in classifying hybrid plants Evolution. 48: 929-930. DOI: 10.1111/J.1558-5646.1994.Tb01375.X  0.96
1992 Blackett RS, Keim P. Big game species identification by deoxyribonucleic acid (DNA) probes Journal of Forensic Sciences. 37: 590-596. PMID 1500901 DOI: 10.1520/Jfs13266J  0.96
1992 Honeycutt RJ, Sobral BWS, Keim P, Irvine JE. A rapid DNA extraction method for sugarcane and its relatives Plant Molecular Biology Reporter. 10: 66-72. DOI: 10.1007/Bf02669266  0.96
1992 Keim P, Beavis W, Schupp J, Freestone R. Evaluation of soybean RFLP marker diversity in adapted germ plasm Theoretical and Applied Genetics. 85: 205-212. DOI: 10.1007/Bf00222861  0.96
1990 Keim P, Lark KG. The RecE recombination pathway mediates recombination between partially homologous DNA sequences: Structural analysis of recombination products Journal of Structural Biology. 104: 97-106. PMID 2088453 DOI: 10.1016/1047-8477(90)90063-I  0.96
1990 Keim P, Diers BW, Olson TC, Shoemaker RC. RFLP mapping in soybean: Association between marker loci and variation in quantitative traits Genetics. 126: 735-742. PMID 1979039  0.96
1990 Keim P, Diers BW, Shoemaker RC. Genetic analysis of soybean hard seededness with molecular markers Theoretical and Applied Genetics. 79: 465-469. DOI: 10.1007/Bf00226154  0.96
1989 Keim P, Paige KN, Whitham TG, Lark KG. Genetic analysis of an interspecific hybrid swarm of Populus: occurrence of unidirectional introgression. Genetics. 123: 557-65. PMID 2574697  0.96
1989 Keim P, Shoemaker RC, Palmer RG. Restriction fragment length polymorphism diversity in soybean Theoretical and Applied Genetics. 77: 786-792. DOI: 10.1007/Bf00268327  0.96
1989 Close PS, Shoemaker RC, Keim P. Distribution of restriction site polymorphism within the chloroplast genome of the genus Glycine, subgenus Soja Theoretical and Applied Genetics. 77: 768-776. DOI: 10.1007/Bf00268325  0.96
1988 Apuya NR, Frazier BL, Keim P, Jill Roth E, Lark KG. Restriction fragment length polymorphisms as genetic markers in soybean, Glycine max (L.) merrill Theoretical and Applied Genetics. 75: 889-901. DOI: 10.1007/Bf00258050  0.96
1987 Keim P. [50] Isolation of nuclei from soybean suspension cultures Methods in Enzymology. 148: 535-541. PMID 3695952 DOI: 10.1016/0076-6879(87)48052-X  0.96
1987 Keim P, Lark KG. The sequence of the 3.3-kilobase repetitive element from Dipodomys ordii suggests a mechanism for its amplification and interspersion Journal of Molecular Evolution. 25: 65-73. PMID 3041011 DOI: 10.1007/BF02100042  0.96
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