Christopher R. Gignoux, Ph.D. - Publications

Affiliations: 
2013 Pharmaceutical Sciences and Pharmacogenomics University of California, San Francisco, San Francisco, CA 
Area:
Genetics, Epidemiology, Biostatistics Biology

56 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Lin M, Park DS, Zaitlen NA, Henn BM, Gignoux CR. Admixed Populations Improve Power for Variant Discovery and Portability in Genome-Wide Association Studies. Frontiers in Genetics. 12: 673167. PMID 34108994 DOI: 10.3389/fgene.2021.673167  0.56
2019 Wojcik GL, Graff M, Nishimura KK, Tao R, Haessler J, Gignoux CR, Highland HM, Patel YM, Sorokin EP, Avery CL, Belbin GM, Bien SA, Cheng I, Cullina S, Hodonsky CJ, et al. Genetic analyses of diverse populations improves discovery for complex traits. Nature. PMID 31217584 DOI: 10.1038/S41586-019-1310-4  0.56
2018 Lin M, Siford RL, Martin AR, Nakagome S, Möller M, Hoal EG, Bustamante CD, Gignoux CR, Henn BM. Rapid evolution of a skin-lightening allele in southern African KhoeSan. Proceedings of the National Academy of Sciences of the United States of America. 115: 13324-13329. PMID 30530665 DOI: 10.1073/Pnas.1801948115  0.56
2018 Nemat-Gorgani N, Hilton HG, Henn BM, Lin M, Gignoux CR, Myrick JW, Werely CJ, Granka JM, Möller M, Hoal EG, Yawata M, Yawata N, Boelen L, Asquith B, Parham P, et al. Different Selected Mechanisms Attenuated the Inhibitory Interaction of KIR2DL1 with C2HLA-C in Two Indigenous Human Populations in Southern Africa. Journal of Immunology (Baltimore, Md. : 1950). PMID 29549179 DOI: 10.4049/Jimmunol.1701780  0.56
2017 Martin AR, Lin M, Granka JM, Myrick JW, Liu X, Sockell A, Atkinson EG, Werely CJ, Möller M, Sandhu MS, Kingsley DM, Hoal EG, Liu X, Daly MJ, Feldman MW, ... Gignoux CR, et al. An Unexpectedly Complex Architecture for Skin Pigmentation in Africans. Cell. 171: 1340-1353.e14. PMID 29195075 DOI: 10.1016/J.Cell.2017.11.015  0.56
2016 Mathias RA, Taub MA, Gignoux CR, Fu W, Musharoff S, O'Connor TD, Vergara C, Torgerson DG, Pino-Yanes M, Shringarpure SS, Huang L, Rafaels N, Boorgula MP, Johnston HR, Ortega VE, et al. A continuum of admixture in the Western Hemisphere revealed by the African Diaspora genome. Nature Communications. 7: 12522. PMID 27725671 DOI: 10.1038/Ncomms12522  0.56
2016 Uren C, Kim M, Martin AR, Bobo D, Gignoux CR, van Helden PD, Möller M, Hoal EG, Henn BM. Fine-Scale Human Population Structure in Southern Africa Reflects Ecogeographic Boundaries. Genetics. PMID 27474727 DOI: 10.1534/Genetics.116.187369  0.56
2016 Baharian S, Barakatt M, Gignoux CR, Shringarpure S, Errington J, Blot WJ, Bustamante CD, Kenny EE, Williams SM, Aldrich MC, Gravel S. The Great Migration and African-American Genomic Diversity. Plos Genetics. 12: e1006059. PMID 27232753 DOI: 10.1371/Journal.Pgen.1006059  0.56
2015 Homburger JR, Moreno-Estrada A, Gignoux CR, Nelson D, Sanchez E, Ortiz-Tello P, Pons-Estel BA, Acevedo-Vasquez E, Miranda P, Langefeld CD, Gravel S, Alarcón-Riquelme ME, Bustamante CD. Genomic Insights into the Ancestry and Demographic History of South America. Plos Genetics. 11: e1005602. PMID 26636962 DOI: 10.1371/Journal.Pgen.1005602  0.56
2015 Hilton HG, Norman PJ, Nemat-Gorgani N, Goyos A, Hollenbach JA, Henn BM, Gignoux CR, Guethlein LA, Parham P. Loss and Gain of Natural Killer Cell Receptor Function in an African Hunter-Gatherer Population. Plos Genetics. 11: e1005439. PMID 26292085 DOI: 10.1371/Journal.Pgen.1005439  0.56
2015 Pino-Yanes M, Gignoux CR, Galanter JM, Levin AM, Campbell CD, Eng C, Huntsman S, Nishimura KK, Gourraud PA, Mohajeri K, O'Roak BJ, Hu D, Mathias RA, Nguyen EA, Roth LA, et al. Genome-wide association study and admixture mapping reveal new loci associated with total IgE levels in Latinos. The Journal of Allergy and Clinical Immunology. 135: 1502-10. PMID 25488688 DOI: 10.1016/J.Jaci.2014.10.033  0.56
2015 Pino-Yanes M, Thakur N, Gignoux CR, Galanter JM, Roth LA, Eng C, Nishimura KK, Oh SS, Vora H, Huntsman S, Nguyen EA, Hu D, Drake KA, Conti DV, Moreno-Estrada A, et al. Genetic ancestry influences asthma susceptibility and lung function among Latinos. The Journal of Allergy and Clinical Immunology. 135: 228-35. PMID 25301036 DOI: 10.1016/J.Jaci.2014.07.053  0.56
2014 Daya M, van der Merwe L, Gignoux CR, van Helden PD, Möller M, Hoal EG. Using multi-way admixture mapping to elucidate TB susceptibility in the South African Coloured population. Bmc Genomics. 15: 1021. PMID 25422094 DOI: 10.1186/1471-2164-15-1021  0.56
2014 Fejerman L, Ahmadiyeh N, Hu D, Huntsman S, Beckman KB, Caswell JL, Tsung K, John EM, Torres-Mejia G, Carvajal-Carmona L, Echeverry MM, Tuazon AM, Ramirez C, Gignoux CR, et al. Genome-wide association study of breast cancer in Latinas identifies novel protective variants on 6q25. Nature Communications. 5: 5260. PMID 25327703 DOI: 10.1038/Ncomms6260  0.56
2014 Moreno-Estrada A, Gignoux CR, Fernández-López JC, Zakharia F, Sikora M, Contreras AV, Acuña-Alonzo V, Sandoval K, Eng C, Romero-Hidalgo S, Ortiz-Tello P, Robles V, Kenny EE, Nuño-Arana I, Barquera-Lozano R, et al. Human genetics. The genetics of Mexico recapitulates Native American substructure and affects biomedical traits. Science (New York, N.Y.). 344: 1280-5. PMID 24926019 DOI: 10.1126/Science.1251688  0.56
2014 Kidd JM, Sharpton TJ, Bobo D, Norman PJ, Martin AR, Carpenter ML, Sikora M, Gignoux CR, Nemat-Gorgani N, Adams A, Guadalupe M, Guo X, Feng Q, Li Y, Liu X, et al. Exome capture from saliva produces high quality genomic and metagenomic data. Bmc Genomics. 15: 262. PMID 24708091 DOI: 10.1186/1471-2164-15-262  0.56
2014 Poole A, Urbanek C, Eng C, Schageman J, Jacobson S, O'Connor BP, Galanter JM, Gignoux CR, Roth LA, Kumar R, Lutz S, Liu AH, Fingerlin TE, Setterquist RA, Burchard EG, et al. Dissecting childhood asthma with nasal transcriptomics distinguishes subphenotypes of disease Journal of Allergy and Clinical Immunology. 133: 670-678.e12. PMID 24495433 DOI: 10.1016/J.Jaci.2013.11.025  0.56
2014 Galanter JM, Gignoux CR, Torgerson DG, Roth LA, Eng C, Oh SS, Nguyen EA, Drake KA, Huntsman S, Hu D, Sen S, Davis A, Farber HJ, Avila PC, Brigino-Buenaventura E, et al. Genome-wide association study and admixture mapping identify different asthma-associated loci in Latinos: the Genes-environments & Admixture in Latino Americans study. The Journal of Allergy and Clinical Immunology. 134: 295-305. PMID 24406073 DOI: 10.1016/J.Jaci.2013.08.055  0.56
2014 Drake KA, Torgerson DG, Gignoux CR, Galanter JM, Roth LA, Huntsman S, Eng C, Oh SS, Yee SW, Lin L, Bustamante CD, Moreno-Estrada A, Sandoval K, Davis A, Borrell LN, et al. A genome-wide association study of bronchodilator response in Latinos implicates rare variants. The Journal of Allergy and Clinical Immunology. 133: 370-8. PMID 23992748 DOI: 10.1016/J.Jaci.2013.06.043  0.56
2013 Gravel S, Zakharia F, Moreno-Estrada A, Byrnes JK, Muzzio M, Rodriguez-Flores JL, Kenny EE, Gignoux CR, Maples BK, Guiblet W, Dutil J, Via M, Sandoval K, Bedoya G, et al. Reconstructing Native American migrations from whole-genome and whole-exome data. Plos Genetics. 9: e1004023. PMID 24385924 DOI: 10.1371/Journal.Pgen.1004023  0.56
2013 Daya M, van der Merwe L, Galal U, Möller M, Salie M, Chimusa ER, Galanter JM, van Helden PD, Henn BM, Gignoux CR, Hoal E. A panel of ancestry informative markers for the complex five-way admixed South African coloured population. Plos One. 8: e82224. PMID 24376522 DOI: 10.1371/Journal.Pone.0082224  0.56
2013 Moreno-Estrada A, Gravel S, Zakharia F, McCauley JL, Byrnes JK, Gignoux CR, Ortiz-Tello PA, Martínez RJ, Hedges DJ, Morris RW, Eng C, Sandoval K, Acevedo-Acevedo S, Norman PJ, Layrisse Z, et al. Reconstructing the population genetic history of the Caribbean. Plos Genetics. 9: e1003925. PMID 24244192 DOI: 10.1371/Journal.Pgen.1003925  0.56
2013 Thakur N, Oh SS, Nguyen EA, Martin M, Roth LA, Galanter J, Gignoux CR, Eng C, Davis A, Meade K, LeNoir MA, Avila PC, Farber HJ, Serebrisky D, Brigino-Buenaventura E, et al. Socioeconomic status and childhood asthma in urban minority youths. The GALA II and SAGE II studies. American Journal of Respiratory and Critical Care Medicine. 188: 1202-9. PMID 24050698 DOI: 10.1164/Rccm.201306-1016Oc  0.56
2013 Botigué LR, Henn BM, Gravel S, Maples BK, Gignoux CR, Corona E, Atzmon G, Burns E, Ostrer H, Flores C, Bertranpetit J, Comas D, Bustamante CD. Gene flow from North Africa contributes to differential human genetic diversity in southern Europe. Proceedings of the National Academy of Sciences of the United States of America. 110: 11791-6. PMID 23733930 DOI: 10.1073/Pnas.1306223110  0.56
2013 Kumar R, Nguyen EA, Roth LA, Oh SS, Gignoux CR, Huntsman S, Eng C, Moreno-Estrada A, Sandoval K, Peñaloza-Espinosa RI, López-López M, Avila PC, Farber HJ, Tcheurekdjian H, Rodriguez-Cintron W, et al. Factors associated with degree of atopy in Latino children in a nationwide pediatric sample: the Genes-environments and Admixture in Latino Asthmatics (GALA II) study. The Journal of Allergy and Clinical Immunology. 132: 896-905.e1. PMID 23684070 DOI: 10.1016/J.Jaci.2013.02.046  0.56
2013 Pasaniuc B, Sankararaman S, Torgerson DG, Gignoux C, Zaitlen N, Eng C, Rodriguez-Cintron W, Chapela R, Ford JG, Avila PC, Rodriguez-Santana J, Chen GK, Le Marchand L, Henderson B, Reich D, et al. Analysis of Latino populations from GALA and MEC studies reveals genomic loci with biased local ancestry estimation. Bioinformatics (Oxford, England). 29: 1407-15. PMID 23572411 DOI: 10.1093/Bioinformatics/Btt166  0.56
2013 Himes BE, Sheppard K, Berndt A, Leme AS, Myers RA, Gignoux CR, Levin AM, Gauderman WJ, Yang JJ, Mathias RA, Romieu I, Torgerson DG, Roth LA, Huntsman S, Eng C, et al. Integration of mouse and human genome-wide association data identifies KCNIP4 as an asthma gene. Plos One. 8: e56179. PMID 23457522 DOI: 10.1371/Journal.Pone.0056179  0.56
2013 Wall JD, Yang MA, Jay F, Kim SK, Durand EY, Stevison LS, Gignoux C, Woerner A, Hammer MF, Slatkin M. Higher levels of neanderthal ancestry in East Asians than in Europeans. Genetics. 194: 199-209. PMID 23410836 DOI: 10.1534/Genetics.112.148213  0.56
2013 Levin AM, Mathias RA, Huang L, Roth LA, Daley D, Myers RA, Himes BE, Romieu I, Yang M, Eng C, Park JE, Zoratti K, Gignoux CR, Torgerson DG, Galanter JM, et al. A meta-analysis of genome-wide association studies for serum total IgE in diverse study populations. The Journal of Allergy and Clinical Immunology. 131: 1176-84. PMID 23146381 DOI: 10.1016/J.Jaci.2012.10.002  0.56
2012 Kim SK, Gignoux CR, Wall JD, Lum-Jones A, Wang H, Haiman CA, Chen GK, Henderson BE, Kolonel LN, Le Marchand L, Stram DO, Saxena R, Cheng I. Population genetic structure and origins of Native Hawaiians in the multiethnic cohort study. Plos One. 7: e47881. PMID 23144833 DOI: 10.1371/Journal.Pone.0047881  0.56
2012 Myers RA, Himes BE, Gignoux CR, Yang JJ, Gauderman WJ, Rebordosa C, Xie J, Torgerson DG, Levin AM, Baurley J, Graves PE, Mathias RA, Romieu I, Roth LA, Conti D, et al. Further replication studies of the EVE Consortium meta-analysis identifies 2 asthma risk loci in European Americans. The Journal of Allergy and Clinical Immunology. 130: 1294-301. PMID 23040885 DOI: 10.1016/J.Jaci.2012.07.054  0.56
2012 Granka JM, Henn BM, Gignoux CR, Kidd JM, Bustamante CD, Feldman MW. Limited evidence for classic selective sweeps in African populations. Genetics. 192: 1049-64. PMID 22960214 DOI: 10.1534/Genetics.112.144071  0.56
2012 Aldrich MC, Kumar R, Colangelo LA, Williams LK, Sen S, Kritchevsky SB, Meibohm B, Galanter J, Hu D, Gignoux CR, Liu Y, Harris TB, Ziv E, Zmuda J, Garcia M, et al. Genetic ancestry-smoking interactions and lung function in African Americans: a cohort study. Plos One. 7: e39541. PMID 22737244 DOI: 10.1371/Journal.Pone.0039541  0.56
2012 Torgerson DG, Capurso D, Ampleford EJ, Li X, Moore WC, Gignoux CR, Hu D, Eng C, Mathias RA, Busse WW, Castro M, Erzurum SC, Fitzpatrick AM, Gaston B, Israel E, et al. Genome-wide ancestry association testing identifies a common European variant on 6q14.1 as a risk factor for asthma in African American subjects. The Journal of Allergy and Clinical Immunology. 130: 622-629.e9. PMID 22607992 DOI: 10.1016/J.Jaci.2012.03.045  0.56
2012 Avena S, Via M, Ziv E, Pérez-Stable EJ, Gignoux CR, Dejean C, Huntsman S, Torres-Mejía G, Dutil J, Matta JL, Beckman K, Burchard EG, Parolin ML, Goicoechea A, Acreche N, et al. Heterogeneity in genetic admixture across different regions of Argentina. Plos One. 7: e34695. PMID 22506044 DOI: 10.1371/Journal.Pone.0034695  0.56
2012 Torgerson DG, Gignoux CR, Galanter JM, Drake KA, Roth LA, Eng C, Huntsman S, Torres R, Avila PC, Chapela R, Ford JG, Rodríguez-Santana JR, Rodríguez-Cintrón W, Hernandez RD, Burchard EG. Case-control admixture mapping in Latino populations enriches for known asthma-associated genes. The Journal of Allergy and Clinical Immunology. 130: 76-82.e12. PMID 22502797 DOI: 10.1016/J.Jaci.2012.02.040  0.56
2012 Baran Y, Pasaniuc B, Sankararaman S, Torgerson DG, Gignoux C, Eng C, Rodriguez-Cintron W, Chapela R, Ford JG, Avila PC, Rodriguez-Santana J, Burchard EG, Halperin E. Fast and accurate inference of local ancestry in Latino populations. Bioinformatics (Oxford, England). 28: 1359-67. PMID 22495753 DOI: 10.1093/Bioinformatics/Bts144  0.56
2012 Galanter JM, Fernandez-Lopez JC, Gignoux CR, Barnholtz-Sloan J, Fernandez-Rozadilla C, Via M, Hidalgo-Miranda A, Contreras AV, Figueroa LU, Raska P, Jimenez-Sanchez G, Zolezzi IS, Torres M, Ponte CR, Ruiz Y, et al. Development of a panel of genome-wide ancestry informative markers to study admixture throughout the Americas. Plos Genetics. 8: e1002554. PMID 22412386 DOI: 10.1371/Journal.Pgen.1002554  0.56
2012 Fejerman L, Chen GK, Eng C, Huntsman S, Hu D, Williams A, Pasaniuc B, John EM, Via M, Gignoux C, Ingles S, Monroe KR, Kolonel LN, Torres-Mejía G, Pérez-Stable EJ, et al. Admixture mapping identifies a locus on 6q25 associated with breast cancer risk in US Latinas. Human Molecular Genetics. 21: 1907-17. PMID 22228098 DOI: 10.1093/Hmg/Ddr617  0.56
2012 Kumar R, Tsai HJ, Hong X, Gignoux C, Pearson C, Ortiz K, Fu M, Pongracic JA, Burchard EG, Bauchner H, Wang X. African ancestry, early life exposures, and respiratory morbidity in early childhood. Clinical and Experimental Allergy : Journal of the British Society For Allergy and Clinical Immunology. 42: 265-74. PMID 22093077 DOI: 10.1111/J.1365-2222.2011.03873.X  0.56
2011 Kovacic MB, Myers JM, Wang N, Martin LJ, Lindsey M, Ericksen MB, He H, Patterson TL, Baye TM, Torgerson D, Roth LA, Gupta J, Sivaprasad U, Gibson AM, Tsoras AM, ... ... Gignoux C, et al. Identification of KIF3A as a novel candidate gene for childhood asthma using RNA expression and population allelic frequencies differences. Plos One. 6: e23714. PMID 21912604 DOI: 10.1371/Journal.Pone.0023714  0.56
2011 Torgerson DG, Ampleford EJ, Chiu GY, Gauderman WJ, Gignoux CR, Graves PE, Himes BE, Levin AM, Mathias RA, Hancock DB, Baurley JW, Eng C, Stern DA, Celedón JC, Rafaels N, et al. Meta-analysis of genome-wide association studies of asthma in ethnically diverse North American populations. Nature Genetics. 43: 887-92. PMID 21804549 DOI: 10.1038/Ng.888  0.56
2011 Schauberger EM, Ewart SL, Arshad SH, Huebner M, Karmaus W, Holloway JW, Friderici KH, Ziegler JT, Zhang H, Rose-Zerilli MJ, Barton SJ, Holgate ST, Kilpatrick JR, Harley JB, Lajoie-Kadoch S, ... ... Gignoux C, et al. Identification of ATPAF1 as a novel candidate gene for asthma in children. The Journal of Allergy and Clinical Immunology. 128: 753-760.e11. PMID 21696813 DOI: 10.1016/J.Jaci.2011.04.058  0.56
2011 Galanter JM, Torgerson D, Gignoux CR, Sen S, Roth LA, Via M, Aldrich MC, Eng C, Huntsman S, Rodriguez-Santana J, Rodriguez-Cintrón W, Chapela R, Ford JG, Burchard EG. Cosmopolitan and ethnic-specific replication of genetic risk factors for asthma in 2 Latino populations. The Journal of Allergy and Clinical Immunology. 128: 37-43.e12. PMID 21621256 DOI: 10.1016/J.Jaci.2011.03.050  0.56
2011 Gignoux CR, Henn BM, Mountain JL. Rapid, global demographic expansions after the origins of agriculture. Proceedings of the National Academy of Sciences of the United States of America. 108: 6044-9. PMID 21444824 DOI: 10.1073/Pnas.0914274108  0.56
2011 Henn BM, Gignoux CR, Jobin M, Granka JM, Macpherson JM, Kidd JM, Rodríguez-Botigué L, Ramachandran S, Hon L, Brisbin A, Lin AA, Underhill PA, Comas D, Kidd KK, Norman PJ, et al. Hunter-gatherer genomic diversity suggests a southern African origin for modern humans. Proceedings of the National Academy of Sciences of the United States of America. 108: 5154-62. PMID 21383195 DOI: 10.1073/Pnas.1017511108  0.56
2011 Wall JD, Jiang R, Gignoux C, Chen GK, Eng C, Huntsman S, Marjoram P. Genetic variation in Native Americans, inferred from Latino SNP and resequencing data. Molecular Biology and Evolution. 28: 2231-7. PMID 21368315 DOI: 10.1093/Molbev/Msr049  0.56
2011 Via M, Gignoux CR, Roth LA, Fejerman L, Galanter J, Choudhry S, Toro-Labrador G, Viera-Vera J, Oleksyk TK, Beckman K, Ziv E, Risch N, Burchard EG, Martínez-Cruzado JC. History shaped the geographic distribution of genomic admixture on the island of Puerto Rico. Plos One. 6: e16513. PMID 21304981 DOI: 10.1371/Journal.Pone.0016513  0.56
2010 Kumar R, Seibold MA, Aldrich MC, Williams LK, Reiner AP, Colangelo L, Galanter J, Gignoux C, Hu D, Sen S, Choudhry S, Peterson EL, Rodriguez-Santana J, Rodriguez-Cintron W, Nalls MA, et al. Genetic ancestry in lung-function predictions. The New England Journal of Medicine. 363: 321-30. PMID 20647190 DOI: 10.1056/Nejmoa0907897  0.56
2010 Via M, Gignoux C, Burchard EG. The 1000 Genomes Project: New opportunities for research and social challenges Genome Medicine. 2. DOI: 10.1186/Gm124  0.56
2009 Henn BM, Gignoux CR, Feldman MW, Mountain JL. Characterizing the time dependency of human mitochondrial DNA mutation rate estimates. Molecular Biology and Evolution. 26: 217-30. PMID 18984905 DOI: 10.1093/Molbev/Msn244  0.56
2009 Henn BM, Gignoux CR, Feldman MW, Mountain JL. Characterizing the time dependency of human mitochondrial DNA mutation rate estimates (Molecular Biology anf Evolution (2009) 26, (217-230) DOI: 10.1093/molbev/msn244) Molecular Biology and Evolution. 26: 713. DOI: 10.1093/molbev/msn304  0.56
2008 Henn BM, Gignoux C, Lin AA, Oefner PJ, Shen P, Scozzari R, Cruciani F, Tishkoff SA, Mountain JL, Underhill PA. Y-chromosomal evidence of a pastoralist migration through Tanzania to southern Africa. Proceedings of the National Academy of Sciences of the United States of America. 105: 10693-8. PMID 18678889 DOI: 10.1073/Pnas.0801184105  0.56
2007 Suni SS, Gignoux C, Gordon DM. Male parentage in dependent-lineage populations of the harvester ant Pogonomyrmex barbatus. Molecular Ecology. 16: 5149-55. PMID 18092991 DOI: 10.1111/J.1365-294X.2007.03492.X  0.56
2007 Tishkoff SA, Gonder MK, Henn BM, Mortensen H, Knight A, Gignoux C, Fernandopulle N, Lema G, Nyambo TB, Ramakrishnan U, Reed FA, Mountain JL. History of click-speaking populations of Africa inferred from mtDNA and Y chromosome genetic variation. Molecular Biology and Evolution. 24: 2180-95. PMID 17656633 DOI: 10.1093/Molbev/Msm155  0.56
2002 Mountain JL, Knight A, Jobin M, Gignoux C, Miller A, Lin AA, Underhill PA. SNPSTRs: empirically derived, rapidly typed, autosomal haplotypes for inference of population history and mutational processes. Genome Research. 12: 1766-72. PMID 12421764 DOI: 10.1101/Gr.238602  0.56
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