Talima Pearson, Ph.D. - Publications

2009 Northern Arizona University, Flagstaff, AZ, United States 
Genetics, Bioinformatics Biology

93 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Panisello Yagüe D, Mihaljevic J, Mbegbu M, Wood CV, Hepp C, Kyman S, Hornstra H, Trotter R, Cope E, Pearson T. Survival of Staphylococcus aureus on sampling swabs stored at different temperatures. Journal of Applied Microbiology. PMID 33544965 DOI: 10.1111/jam.15023  0.52
2021 Miller E, Barragan V, Chiriboga J, Weddell C, Luna L, Jiménez DJ, Aleman J, Mihaljevic JR, Olivas S, Marks J, Izurieta R, Nieto N, Keim P, Trueba G, Caporaso JG, ... Pearson T, et al. Leptospira in river and soil in a highly endemic area of Ecuador. Bmc Microbiology. 21: 17. PMID 33413126 DOI: 10.1186/s12866-020-02069-y  1
2020 Okwumabua O, Williamson CHD, Pearson TR, Sahl JW. Draft Genome Sequence of a Streptococcus suis Isolate from a Case of Cattle Meningitis. Microbiology Resource Announcements. 9. PMID 32381604 DOI: 10.1128/MRA.00153-20  0.68
2020 Pearson T, Sahl JW, Hepp CM, Handady K, Hornstra H, Vazquez AJ, Settles E, Mayo M, Kaestli M, Williamson CHD, Price EP, Sarovich DS, Cook JM, Wolken SR, Bowen RA, et al. Pathogen to commensal? Longitudinal within-host population dynamics, evolution, and adaptation during a chronic >16-year Burkholderia pseudomallei infection. Plos Pathogens. 16: e1008298. PMID 32134991 DOI: 10.1371/Journal.Ppat.1008298  1
2019 Cocking JH, Deberg M, Schupp J, Sahl J, Wiggins K, Porty A, Hornstra HM, Hepp C, Jardine C, Furstenau TN, Schulte-Hostedde A, Fofanov VY, Pearson T. Selective whole genome amplification and sequencing of Coxiella burnetii directly from environmental samples. Genomics. PMID 31678592 DOI: 10.1016/J.Ygeno.2019.10.022  1
2019 Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, ... ... Pearson T, et al. Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nature Biotechnology. PMID 31399723 DOI: 10.1038/S41587-019-0252-6  1
2019 Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, ... ... Pearson T, et al. Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nature Biotechnology. PMID 31341288 DOI: 10.1038/S41587-019-0209-9  1
2019 Pearson T, Caporaso JG, Yellowhair M, Bokulich NA, Padi M, Roe DJ, Wertheim BC, Linhart M, Martinez JA, Bilagody C, Hornstra H, Alberts DS, Lance P, Thompson PA. Effects of ursodeoxycholic acid on the gut microbiome and colorectal adenoma development. Cancer Medicine. PMID 30652422 DOI: 10.1002/Cam4.1965  0.44
2018 Baker AL, Pearson T, Sahl JW, Hepp C, Price EP, Sarovich DS, Mayo M, Tuanyok A, Currie BJ, Keim P, Warner J. Burkholderia pseudomallei distribution in Australasia is linked to paleogeographic and anthropogenic history. Plos One. 13: e0206845. PMID 30395628 DOI: 10.1371/Journal.Pone.0206845  1
2018 Fleshman A, Mullins K, Sahl J, Hepp C, Nieto N, Wiggins K, Hornstra H, Kelly D, Chan TC, Phetsouvanh R, Dittrich S, Panyanivong P, Paris D, Newton P, Richards A, ... Pearson T, et al. Corrigendum: Comparative pan-genomic analyses of Orientia tsutsugamushi reveal an exceptional model of bacterial evolution driving genomic diversity. Microbial Genomics. 4. PMID 30383521 DOI: 10.1099/mgen.0.000230  0.52
2018 Fleshman A, Mullins K, Sahl J, Hepp C, Nieto N, Wiggins K, Hornstra H, Kelly D, Chan TC, Phetsouvanh R, Dittrich S, Panyanivong P, Paris D, Newton P, Richards A, ... Pearson T, et al. Comparative pan-genomic analyses of Orientia tsutsugamushi reveal an exceptional model of bacterial evolution driving genomic diversity. Microbial Genomics. PMID 30035711 DOI: 10.1099/mgen.0.000199  0.52
2018 Sahl JW, Mayo M, Price EP, Sarovich DS, Kaestli M, Pearson T, Williamson CHD, Nottingham R, Sheridan K, Wagner DM, Currie BJ, Keim P. Complete Genome Sequence of the Environmental Burkholderia pseudomallei Sequence Type 131 Isolate MSHR1435, Associated with a Chronic Melioidosis Infection. Genome Announcements. 6. PMID 29545292 DOI: 10.1128/genomeA.00072-18  1
2017 Drees KP, Lorch JM, Puechmaille SJ, Parise KL, Wibbelt G, Hoyt JR, Sun K, Jargalsaikhan A, Dalannast M, Palmer JM, Lindner DL, Marm Kilpatrick A, Pearson T, Keim PS, Blehert DS, et al. Phylogenetics of a Fungal Invasion: Origins and Widespread Dispersal of White-Nose Syndrome. Mbio. 8. PMID 29233897 DOI: 10.1128/Mbio.01941-17  0.48
2017 Barragan V, Olivas S, Keim P, Pearson T. Critical knowledge gaps in our understanding about environmental cycling and transmission of Leptospira. Applied and Environmental Microbiology. PMID 28754706 DOI: 10.1128/Aem.01190-17  1
2017 Antwerpen MH, Sahl JW, Birdsell D, Pearson T, Pearce MJ, Redmond C, Meyer H, Keim PS. Unexpected Relations of Historical Anthrax Strain. Mbio. 8. PMID 28442608 DOI: 10.1128/Mbio.00440-17  0.68
2017 Barragan V, Nieto N, Keim P, Pearson T. Meta-analysis to estimate the load of Leptospira excreted in urine: beyond rats as important sources of transmission in low-income rural communities. Bmc Research Notes. 10: 71. PMID 28129788 DOI: 10.1186/S13104-017-2384-4  1
2016 Olivas S, Hornstra H, Priestley RA, Kaufman E, Hepp C, Sonderegger DL, Handady K, Massung RF, Keim P, Kersh GJ, Pearson T. Massive dispersal of Coxiella burnetii among cattle across the United States. Microbial Genomics. 2: e000068. PMID 28348863 DOI: 10.1099/mgen.0.000068  1
2016 Sahl JW, Pearson T, Okinaka R, Schupp JM, Gillece JD, Heaton H, Birdsell D, Hepp C, Fofanov V, Noseda R, Fasanella A, Hoffmaster A, Wagner DM, Keim P. A Bacillus anthracis Genome Sequence from the Sverdlovsk 1979 Autopsy Specimens. Mbio. 7. PMID 27677796 DOI: 10.1128/Mbio.01501-16  1
2016 Sahl JW, Vazquez AJ, Hall CM, Busch JD, Tuanyok A, Mayo M, Schupp JM, Lummis M, Pearson T, Shippy K, Colman RE, Allender CJ, Theobald V, Sarovich DS, Price EP, et al. The Effects of Signal Erosion and Core Genome Reduction on the Identification of Diagnostic Markers. Mbio. 7. PMID 27651357 DOI: 10.1128/Mbio.00846-16  1
2016 Barragan V, Chiriboga J, Miller E, Olivas S, Birdsell D, Hepp C, Hornstra H, Schupp JM, Morales M, Gonzalez M, Reyes S, de la Cruz C, Keim P, Hartskeerl R, Trueba G, ... Pearson T, et al. High Leptospira Diversity in Animals and Humans Complicates the Search for Common Reservoirs of Human Disease in Rural Ecuador. Plos Neglected Tropical Diseases. 10: e0004990. PMID 27622673 DOI: 10.1371/Journal.Pntd.0004990  1
2016 Bowers JR, Lemmer D, Sahl JW, Pearson T, Driebe EM, Wojack B, Saubolle MA, Engelthaler DM, Keim P. KlebSeq: A Diagnostic Tool for Surveillance, Detection, and Monitoring of Klebsiella pneumoniae. Journal of Clinical Microbiology. PMID 27510832 DOI: 10.1128/Jcm.00927-16  1
2016 Kersh GJ, Priestley RA, Hornstra HM, Self JS, Fitzpatrick KA, Biggerstaff BJ, Keim P, Pearson T, Massung RF. Genotyping and Axenic Growth of Coxiella burnetii Isolates Found in the United States Environment. Vector Borne and Zoonotic Diseases (Larchmont, N.Y.). PMID 27304166 DOI: 10.1089/Vbz.2016.1972  0.8
2016 Pearson T, Cocking JH, Hornstra HM, Keim P. False detection of Coxiella burnetii-what is the risk? Fems Microbiology Letters. 363. PMID 27190242 DOI: 10.1093/femsle/fnw088  1
2016 Barragan V, Sahl JW, Wiggins K, Chiriboga J, Salinas A, Cantos NE, Loor MN, Intriago BI, Morales M, Trueba G, Pearson T. Draft Genome Sequence of the First Pathogenic Leptospira Isolates from Ecuador. Genome Announcements. 4. PMID 27151788 DOI: 10.1128/genomeA.00271-16  0.68
2015 Pullan ST, Pearson TR, Latham J, Mason J, Atkinson B, Silman NJ, Marston CK, Sahl JW, Birdsell D, Hoffmaster AR, Keim P, Vipond R. Whole-genome sequencing investigation of animal-skin-drum-associated UK anthrax cases reveals evidence of mixed populations and relatedness to a US case. Microbial Genomics. 1: e000039. PMID 28348823 DOI: 10.1099/mgen.0.000039  1
2015 Keim P, Grunow R, Vipond R, Grass G, Hoffmaster A, Birdsell DN, Klee SR, Pullan S, Antwerpen M, Bayer BN, Latham J, Wiggins K, Hepp C, Pearson T, Brooks T, et al. Whole Genome Analysis of Injectional Anthrax Identifies Two Disease Clusters Spanning More Than 13 Years. Ebiomedicine. 2: 1613-8. PMID 26870786 DOI: 10.1016/J.Ebiom.2015.10.004  0.8
2015 Bauer AE, Olivas S, Cooper M, Hornstra H, Keim P, Pearson T, Johnson AJ. Estimated herd prevalence and sequence types of Coxiella burnetii in bulk tank milk samples from commercial dairies in Indiana. Bmc Veterinary Research. 11: 186. PMID 26248712 DOI: 10.1186/s12917-015-0517-3  0.8
2015 Driebe EM, Sahl JW, Roe C, Bowers JR, Schupp JM, Gillece JD, Kelley E, Price LB, Pearson TR, Hepp CM, Brzoska PM, Cummings CA, Furtado MR, Andersen PS, Stegger M, et al. Using Whole Genome Analysis to Examine Recombination across Diverse Sequence Types of Staphylococcus aureus. Plos One. 10: e0130955. PMID 26161978 DOI: 10.1371/Journal.Pone.0130955  0.8
2015 Price EP, Sarovich DS, Viberg L, Mayo M, Kaestli M, Tuanyok A, Foster JT, Keim P, Pearson T, Currie BJ. Whole-genome sequencing of Burkholderia pseudomallei isolates from an unusual melioidosis case identifies a polyclonal infection with the same multilocus sequence type. Journal of Clinical Microbiology. 53: 282-6. PMID 25339397 DOI: 10.1128/Jcm.02560-14  0.8
2014 Eppinger M, Pearson T, Koenig SS, Pearson O, Hicks N, Agrawal S, Sanjar F, Galens K, Daugherty S, Crabtree J, Hendriksen RS, Price LB, Upadhyay BP, Shakya G, Fraser CM, et al. Genomic epidemiology of the Haitian cholera outbreak: a single introduction followed by rapid, extensive, and continued spread characterized the onset of the epidemic. Mbio. 5: e01721. PMID 25370488 DOI: 10.1128/Mbio.01721-14  0.8
2014 Scholz HC, Pearson T, Hornstra H, Projahn M, Terzioglu R, Wernery R, Georgi E, Riehm JM, Wagner DM, Keim PS, Joseph M, Johnson B, Kinne J, Jose S, Hepp CM, et al. Genotyping of Burkholderia mallei from an outbreak of glanders in Bahrain suggests multiple introduction events. Plos Neglected Tropical Diseases. 8: e3195. PMID 25255232 DOI: 10.1371/Journal.Pntd.0003195  0.8
2014 Okinaka RT, Challacombe J, Drees K, Birdsell DN, Janke N, Naumann A, Seymour M, Hornstra H, Schupp J, Sahl J, Foster JT, Pearson T, Turnbull P, Keim P. Genome Sequence of Bacillus anthracis STI, a Sterne-Like Georgian/Soviet Vaccine Strain. Genome Announcements. 2. PMID 25237016 DOI: 10.1128/Genomea.00853-14  1
2014 Gyuranecz M, Sulyok K, Balla E, Mag T, Balazs A, Simor Z, Denes B, Hornok S, Bajnoczi P, Hornstra H, Pearson T, Keim P, Dan A. Q fever epidemic in Hungary, April to July 2013. Euro Surveillance : Bulletin Europã©En Sur Les Maladies Transmissibles = European Communicable Disease Bulletin. 19. PMID 25108535 DOI: 10.2807/1560-7917.Es2014.19.30.20863  0.8
2014 Khmaladze E, Birdsell DN, Naumann AA, Hochhalter CB, Seymour ML, Nottingham R, Beckstrom-Sternberg SM, Beckstrom-Sternberg J, Nikolich MP, Chanturia G, Zhgenti E, Zakalashvili M, Malania L, Babuadze G, Tsertsvadze N, ... ... Pearson T, et al. Phylogeography of Bacillus anthracis in the country of Georgia shows evidence of population structuring and is dissimilar to other regional genotypes. Plos One. 9: e102651. PMID 25047912 DOI: 10.1371/Journal.Pone.0102651  0.8
2014 Sulyok KM, Kreizinger Z, Hornstra HM, Pearson T, Szigeti A, Dán Á, Balla E, Keim PS, Gyuranecz M. Genotyping of Coxiella burnetii from domestic ruminants and human in Hungary: indication of various genotypes. Bmc Veterinary Research. 10: 107. PMID 24885415 DOI: 10.1186/1746-6148-10-107  0.8
2014 Birdsell DN, Johansson A, Öhrman C, Kaufman E, Molins C, Pearson T, Gyuranecz M, Naumann A, Vogler AJ, Myrtennäs K, Larsson P, Forsman M, Sjödin A, Gillece JD, Schupp J, et al. Francisella tularensis subsp. tularensis group A.I, United States. Emerging Infectious Diseases. 20: 861-5. PMID 24755401 DOI: 10.3201/Eid2005.131559  0.8
2014 Pearson T, Hornstra HM, Hilsabeck R, Gates LT, Olivas SM, Birdsell DM, Hall CM, German S, Cook JM, Seymour ML, Priestley RA, Kondas AV, Clark Friedman CL, Price EP, Schupp JM, et al. High prevalence and two dominant host-specific genotypes of Coxiella burnetii in U.S. milk. Bmc Microbiology. 14: 41. PMID 24533573 DOI: 10.1186/1471-2180-14-41  0.8
2014 Wagner DM, Klunk J, Harbeck M, Devault A, Waglechner N, Sahl JW, Enk J, Birdsell DN, Kuch M, Lumibao C, Poinar D, Pearson T, Fourment M, Golding B, Riehm JM, et al. Yersinia pestis and the plague of Justinian 541-543 AD: a genomic analysis. The Lancet. Infectious Diseases. 14: 319-26. PMID 24480148 DOI: 10.1016/S1473-3099(13)70323-2  0.8
2014 Wattam AR, Foster JT, Mane SP, Beckstrom-Sternberg SM, Beckstrom-Sternberg JM, Dickerman AW, Keim P, Pearson T, Shukla M, Ward DV, Williams KP, Sobral BW, Tsolis RM, Whatmore AM, O'Callaghan D. Comparative phylogenomics and evolution of the Brucellae reveal a path to virulence. Journal of Bacteriology. 196: 920-30. PMID 24336939 DOI: 10.1128/Jb.01091-13  0.8
2013 Price LB, Johnson JR, Aziz M, Clabots C, Johnston B, Tchesnokova V, Nordstrom L, Billig M, Chattopadhyay S, Stegger M, Andersen PS, Pearson T, Riddell K, Rogers P, Scholes D, et al. The epidemic of extended-spectrum-β-lactamase-producing Escherichia coli ST131 is driven by a single highly pathogenic subclone, H30-Rx. Mbio. 4: e00377-13. PMID 24345742 DOI: 10.1128/Mbio.00377-13  0.8
2013 Price EP, Sarovich DS, Webb JR, Ginther JL, Mayo M, Cook JM, Seymour ML, Kaestli M, Theobald V, Hall CM, Busch JD, Foster JT, Keim P, Wagner DM, Tuanyok A, ... Pearson T, et al. Accurate and rapid identification of the Burkholderia pseudomallei near-neighbour, Burkholderia ubonensis, using real-time PCR. Plos One. 8: e71647. PMID 23967229 DOI: 10.1371/Journal.Pone.0071647  0.8
2013 Price EP, Sarovich DS, Mayo M, Tuanyok A, Drees KP, Kaestli M, Beckstrom-Sternberg SM, Babic-Sternberg JS, Kidd TJ, Bell SC, Keim P, Pearson T, Currie BJ. Within-host evolution of Burkholderia pseudomallei over a twelve-year chronic carriage infection. Mbio. 4. PMID 23860767 DOI: 10.1128/Mbio.00388-13  0.8
2013 Pearson T, Hornstra HM, Sahl JW, Schaack S, Schupp JM, Beckstrom-Sternberg SM, O'Neill MW, Priestley RA, Champion MD, Beckstrom-Sternberg JS, Kersh GJ, Samuel JE, Massung RF, Keim P. When outgroups fail; phylogenomics of rooting the emerging pathogen, Coxiella burnetii. Systematic Biology. 62: 752-62. PMID 23736103 DOI: 10.1093/Sysbio/Syt038  0.8
2013 Perego UA, Achilli A, Ekins JE, Milani L, Lari M, Pilli E, Brown A, Price EP, Wolken SR, Matthews M, Allen CA, Pearson TR, Angerhofer N, Caramelli D, Kupferschmid T, et al. The Mountain Meadows Massacre and "poisoned springs": scientific testing of the more recent, anthrax theory. International Journal of Legal Medicine. 127: 77-83. PMID 22395921 DOI: 10.1007/s00414-012-0681-y  0.8
2012 Sarovich DS, Price EP, Limmathurotsakul D, Cook JM, Von Schulze AT, Wolken SR, Keim P, Peacock SJ, Pearson T. Development of ceftazidime resistance in an acute Burkholderia pseudomallei infection. Infection and Drug Resistance. 5: 129-32. PMID 22977307 DOI: 10.2147/Idr.S35529  0.8
2012 Price EP, Seymour ML, Sarovich DS, Latham J, Wolken SR, Mason J, Vincent G, Drees KP, Beckstrom-Sternberg SM, Phillippy AM, Koren S, Okinaka RT, Chung WK, Schupp JM, Wagner DM, ... ... Pearson T, et al. Molecular epidemiologic investigation of an anthrax outbreak among heroin users, Europe. Emerging Infectious Diseases. 18: 1307-13. PMID 22840345 DOI: 10.3201/Eid1808.111343  0.8
2012 Foster JT, Price LB, Beckstrom-Sternberg SM, Pearson T, Brown WD, Kiesling DM, Allen CA, Liu CM, Beckstrom-Sternberg J, Roberto FF, Keim P. Genotyping of Brucella species using clade specific SNPs. Bmc Microbiology. 12: 110. PMID 22712667 DOI: 10.1186/1471-2180-12-110  0.8
2012 Price EP, Dale JL, Cook JM, Sarovich DS, Seymour ML, Ginther JL, Kaufman EL, Beckstrom-Sternberg SM, Mayo M, Kaestli M, Glass MB, Gee JE, Wuthiekanun V, Warner JM, Baker A, ... ... Pearson T, et al. Development and validation of Burkholderia pseudomallei-specific real-time PCR assays for clinical, environmental or forensic detection applications. Plos One. 7: e37723. PMID 22624061 DOI: 10.1371/Journal.Pone.0037723  0.8
2012 Kaestli M, Richardson LJ, Colman RE, Tuanyok A, Price EP, Bowers JR, Mayo M, Kelley E, Seymour ML, Sarovich DS, Pearson T, Engelthaler DM, Wagner DM, Keim PS, Schupp JM, et al. Comparison of TaqMan PCR assays for detection of the melioidosis agent Burkholderia pseudomallei in clinical specimens. Journal of Clinical Microbiology. 50: 2059-62. PMID 22442327 DOI: 10.1128/Jcm.06737-11  0.8
2012 Birdsell DN, Pearson T, Price EP, Hornstra HM, Nera RD, Stone N, Gruendike J, Kaufman EL, Pettus AH, Hurbon AN, Buchhagen JL, Harms NJ, Chanturia G, Gyuranecz M, Wagner DM, et al. Melt analysis of mismatch amplification mutation assays (Melt-MAMA): a functional study of a cost-effective SNP genotyping assay in bacterial models. Plos One. 7: e32866. PMID 22438886 DOI: 10.1371/Journal.Pone.0032866  0.8
2012 Sarovich DS, Price EP, Von Schulze AT, Cook JM, Mayo M, Watson LM, Richardson L, Seymour ML, Tuanyok A, Engelthaler DM, Pearson T, Peacock SJ, Currie BJ, Keim P, Wagner DM. Characterization of ceftazidime resistance mechanisms in clinical isolates of Burkholderia pseudomallei from Australia. Plos One. 7: e30789. PMID 22363490 DOI: 10.1371/Journal.Pone.0030789  0.8
2012 Price LB, Stegger M, Hasman H, Aziz M, Larsen J, Andersen PS, Pearson T, Waters AE, Foster JT, Schupp J, Gillece J, Driebe E, Liu CM, Springer B, Zdovc I, et al. Staphylococcus aureus CC398: host adaptation and emergence of methicillin resistance in livestock. Mbio. 3. PMID 22354957 DOI: 10.1128/Mbio.00305-11  0.8
2011 Liguori AP, Warrington SD, Ginther JL, Pearson T, Bowers J, Glass MB, Mayo M, Wuthiekanun V, Engelthaler D, Peacock SJ, Currie BJ, Wagner DM, Keim P, Tuanyok A. Diversity of 16S-23S rDNA internal transcribed spacer (ITS) reveals phylogenetic relationships in Burkholderia pseudomallei and its near-neighbors. Plos One. 6: e29323. PMID 22195045 DOI: 10.1371/Journal.Pone.0029323  0.8
2011 Dale J, Price EP, Hornstra H, Busch JD, Mayo M, Godoy D, Wuthiekanun V, Baker A, Foster JT, Wagner DM, Tuanyok A, Warner J, Spratt BG, Peacock SJ, Currie BJ, ... ... Pearson T, et al. Epidemiological tracking and population assignment of the non-clonal bacterium, Burkholderia pseudomallei. Plos Neglected Tropical Diseases. 5: e1381. PMID 22180792 DOI: 10.1371/Journal.Pntd.0001381  0.8
2011 Marston CK, Allen CA, Beaudry J, Price EP, Wolken SR, Pearson T, Keim P, Hoffmaster AR. Molecular epidemiology of anthrax cases associated with recreational use of animal hides and yarn in the United States. Plos One. 6: e28274. PMID 22174783 DOI: 10.1371/Journal.Pone.0028274  0.8
2011 Gillece JD, Schupp JM, Balajee SA, Harris J, Pearson T, Yan Y, Keim P, DeBess E, Marsden-Haug N, Wohrle R, Engelthaler DM, Lockhart SR. Whole genome sequence analysis of Cryptococcus gattii from the Pacific Northwest reveals unexpected diversity. Plos One. 6: e28550. PMID 22163313 DOI: 10.1371/Journal.Pone.0028550  0.8
2011 Hornstra HM, Priestley RA, Georgia SM, Kachur S, Birdsell DN, Hilsabeck R, Gates LT, Samuel JE, Heinzen RA, Kersh GJ, Keim P, Massung RF, Pearson T. Rapid typing of Coxiella burnetii. Plos One. 6: e26201. PMID 22073151 DOI: 10.1371/Journal.Pone.0026201  0.8
2011 Keim PS, Aarestrup FM, Shakya G, Price LB, Hendriksen RS, Engelthaler DM, Pearson T. Reply to "South Asia instead of Nepal may be the origin of the Haitian cholera outbreak strain". Mbio. 2: e00245-11. PMID 22045990 DOI: 10.1128/Mbio.00245-11  0.8
2011 Engelthaler DM, Bowers J, Schupp JA, Pearson T, Ginther J, Hornstra HM, Dale J, Stewart T, Sunenshine R, Waddell V, Levy C, Gillece J, Price LB, Contente T, Beckstrom-Sternberg SM, et al. Molecular investigations of a locally acquired case of melioidosis in Southern AZ, USA. Plos Neglected Tropical Diseases. 5: e1347. PMID 22028940 DOI: 10.1371/Journal.Pntd.0001347  0.8
2011 Okinaka RT, Price EP, Wolken SR, Gruendike JM, Chung WK, Pearson T, Xie G, Munk C, Hill KK, Challacombe J, Ivins BE, Schupp JM, Beckstrom-Sternberg SM, Friedlander A, Keim P. An attenuated strain of Bacillus anthracis (CDC 684) has a large chromosomal inversion and altered growth kinetics. Bmc Genomics. 12: 477. PMID 21962024 DOI: 10.1186/1471-2164-12-477  0.8
2011 Hendriksen RS, Price LB, Schupp JM, Gillece JD, Kaas RS, Engelthaler DM, Bortolaia V, Pearson T, Waters AE, Upadhyay BP, Shrestha SD, Adhikari S, Shakya G, Keim PS, Aarestrup FM. Population genetics of Vibrio cholerae from Nepal in 2010: evidence on the origin of the Haitian outbreak. Mbio. 2: e00157-11. PMID 21862630 DOI: 10.1128/Mbio.00157-11  0.8
2011 Stewart T, Engelthaler DM, Blaney DD, Tuanyok A, Wangsness E, Smith TL, Pearson T, Komatsu KK, Keim P, Currie BJ, Levy C, Sunenshine R. Epidemiology and investigation of melioidosis, Southern Arizona. Emerging Infectious Diseases. 17: 1286-8. PMID 21762589 DOI: 10.3201/Eid1707.100661  0.8
2011 Chanturia G, Birdsell DN, Kekelidze M, Zhgenti E, Babuadze G, Tsertsvadze N, Tsanava S, Imnadze P, Beckstrom-Sternberg SM, Beckstrom-Sternberg JS, Champion MD, Sinari S, Gyuranecz M, Farlow J, Pettus AH, ... ... Pearson T, et al. Phylogeography of Francisella tularensis subspecies holarctica from the country of Georgia. Bmc Microbiology. 11: 139. PMID 21682874 DOI: 10.1186/1471-2180-11-139  0.8
2011 Baker A, Pearson T, Price EP, Dale J, Keim P, Hornstra H, Greenhill A, Padilla G, Warner J. Molecular phylogeny of Burkholderia pseudomallei from a remote region of Papua New Guinea. Plos One. 6: e18343. PMID 21483841 DOI: 10.1371/Journal.Pone.0018343  0.8
2010 Bowers JR, Engelthaler DM, Ginther JL, Pearson T, Peacock SJ, Tuanyok A, Wagner DM, Currie BJ, Keim PS. BurkDiff: a real-time PCR allelic discrimination assay for Burkholderia pseudomallei and B. mallei. Plos One. 5: e15413. PMID 21103048 DOI: 10.1371/Journal.Pone.0015413  0.8
2010 Price EP, Matthews MA, Beaudry JA, Allred JL, Schupp JM, Birdsell DN, Pearson T, Keim P. Cost-effective interrogation of single nucleotide polymorphisms using the mismatch amplification mutation assay and capillary electrophoresis. Electrophoresis. 31: 3881-8. PMID 21064143 DOI: 10.1002/Elps.201000379  0.8
2010 Nandi T, Ong C, Singh AP, Boddey J, Atkins T, Sarkar-Tyson M, Essex-Lopresti AE, Chua HH, Pearson T, Kreisberg JF, Nilsson C, Ariyaratne P, Ronning C, Losada L, Ruan Y, et al. A genomic survey of positive selection in Burkholderia pseudomallei provides insights into the evolution of accidental virulence. Plos Pathogens. 6: e1000845. PMID 20368977 DOI: 10.1371/Journal.Ppat.1000845  1
2010 Losada L, Ronning CM, DeShazer D, Woods D, Fedorova N, Kim HS, Shabalina SA, Pearson TR, Brinkac L, Tan P, Nandi T, Crabtree J, Badger J, Beckstrom-Sternberg S, Saqib M, et al. Continuing evolution of Burkholderia mallei through genome reduction and large-scale rearrangements. Genome Biology and Evolution. 2: 102-16. PMID 20333227 DOI: 10.1093/Gbe/Evq003  0.8
2010 Price EP, Hornstra HM, Limmathurotsakul D, Max TL, Sarovich DS, Vogler AJ, Dale JL, Ginther JL, Leadem B, Colman RE, Foster JT, Tuanyok A, Wagner DM, Peacock SJ, Pearson T, et al. Within-host evolution of Burkholderia pseudomallei in four cases of acute melioidosis. Plos Pathogens. 6: e1000725. PMID 20090837 DOI: 10.1371/Journal.Ppat.1000725  0.8
2009 Hornstra H, Pearson T, Georgia S, Liguori A, Dale J, Price E, O'Neill M, Deshazer D, Muhammad G, Saqib M, Naureen A, Keim P. Molecular epidemiology of glanders, Pakistan. Emerging Infectious Diseases. 15: 2036-9. PMID 19961695 DOI: 10.3201/Eid1512.090738  0.8
2009 Pearson T, Giffard P, Beckstrom-Sternberg S, Auerbach R, Hornstra H, Tuanyok A, Price EP, Glass MB, Leadem B, Beckstrom-Sternberg JS, Allan GJ, Foster JT, Wagner DM, Okinaka RT, Sim SH, et al. Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer. Bmc Biology. 7: 78. PMID 19922616 DOI: 10.1186/1741-7007-7-78  0.8
2009 Pearson T, Okinaka RT, Foster JT, Keim P. Phylogenetic understanding of clonal populations in an era of whole genome sequencing. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 9: 1010-9. PMID 19477301 DOI: 10.1016/J.Meegid.2009.05.014  0.8
2009 Simonson TS, Okinaka RT, Wang B, Easterday WR, Huynh L, U'Ren JM, Dukerich M, Zanecki SR, Kenefic LJ, Beaudry J, Schupp JM, Pearson T, Wagner DM, Hoffmaster A, Ravel J, et al. Bacillus anthracis in China and its relationship to worldwide lineages. Bmc Microbiology. 9: 71. PMID 19368722 DOI: 10.1186/1471-2180-9-71  0.8
2009 Kenefic LJ, Pearson T, Okinaka RT, Schupp JM, Wagner DM, Hoffmaster AR, Trim CB, Trim CP, Chung WK, Beaudry JA, Jiang L, Gajer P, Foster JT, Mead JI, Ravel J, et al. Pre-Columbian origins for North American anthrax. Plos One. 4: e4813. PMID 19283072 DOI: 10.1371/Journal.Pone.0004813  0.8
2009 Vogler AJ, Birdsell D, Price LB, Bowers JR, Beckstrom-Sternberg SM, Auerbach RK, Beckstrom-Sternberg JS, Johansson A, Clare A, Buchhagen JL, Petersen JM, Pearson T, Vaissaire J, Dempsey MP, Foxall P, et al. Phylogeography of Francisella tularensis: global expansion of a highly fit clone. Journal of Bacteriology. 191: 2474-84. PMID 19251856 DOI: 10.1128/Jb.01786-08  0.8
2009 Foster JT, Beckstrom-Sternberg SM, Pearson T, Beckstrom-Sternberg JS, Chain PS, Roberto FF, Hnath J, Brettin T, Keim P. Whole-genome-based phylogeny and divergence of the genus Brucella. Journal of Bacteriology. 191: 2864-70. PMID 19201792 DOI: 10.1128/Jb.01581-08  0.8
2009 Currie BJ, Haslem A, Pearson T, Hornstra H, Leadem B, Mayo M, Gal D, Ward L, Godoy D, Spratt BG, Keim P. Identification of melioidosis outbreak by multilocus variable number tandem repeat analysis. Emerging Infectious Diseases. 15: 169-74. PMID 19193259 DOI: 10.3201/Eid1502.081036  1
2009 Busch JD, Benford R, Pearson T, Palmer E, Balda RP, Keim P. Development of polymorphic tetranucleotide microsatellites for pinyon jays (Gymnorhinus cyanocephalus) Conservation Genetics. 10: 689-691. DOI: 10.1007/S10592-008-9616-Z  0.8
2008 Kenefic LJ, Pearson T, Okinaka RT, Chung WK, Max T, Trim CP, Beaudry JA, Schupp JM, Van Ert MN, Marston CK, Gutierrez K, Swinford AK, Hoffmaster AR, Keim P. Texas isolates closely related to Bacillus anthracis Ames. Emerging Infectious Diseases. 14: 1494-6. PMID 18760033 DOI: 10.3201/Eid1409.080076  0.8
2008 Keim P, Pearson T, Okinaka R. Microbial forensics: DNA fingerprinting of Bacillus anthracis (anthrax). Analytical Chemistry. 80: 4791-9. PMID 18609763 DOI: 10.1021/Ac086131G  0.8
2008 Okinaka RT, Henrie M, Hill KK, Lowery KS, Van Ert M, Pearson T, Schupp J, Kenefic L, Beaudry J, Hofstadler SA, Jackson PJ, Keim P. Single nucleotide polymorphism typing of Bacillus anthracis from Sverdlovsk tissue. Emerging Infectious Diseases. 14: 653-6. PMID 18394287 DOI: 10.3201/Eid1404.070984  0.8
2007 Tuanyok A, Auerbach RK, Brettin TS, Bruce DC, Munk AC, Detter JC, Pearson T, Hornstra H, Sermswan RW, Wuthiekanun V, Peacock SJ, Currie BJ, Keim P, Wagner DM. A horizontal gene transfer event defines two distinct groups within Burkholderia pseudomallei that have dissimilar geographic distributions. Journal of Bacteriology. 189: 9044-9. PMID 17933898 DOI: 10.1128/Jb.01264-07  0.8
2007 U'ren JM, Hornstra H, Pearson T, Schupp JM, Leadem B, Georgia S, Sermswan RW, Keim P. Fine-scale genetic diversity among Burkholderia pseudomallei soil isolates in northeast Thailand. Applied and Environmental Microbiology. 73: 6678-81. PMID 17720819 DOI: 10.1128/Aem.00986-07  1
2007 Van Ert MN, Easterday WR, Huynh LY, Okinaka RT, Hugh-Jones ME, Ravel J, Zanecki SR, Pearson T, Simonson TS, U'Ren JM, Kachur SM, Leadem-Dougherty RR, Rhoton SD, Zinser G, Farlow J, et al. Global genetic population structure of Bacillus anthracis. Plos One. 2: e461. PMID 17520020 DOI: 10.1371/Journal.Pone.0000461  0.8
2007 U'Ren JM, Schupp JM, Pearson T, Hornstra H, Friedman CL, Smith KL, Daugherty RR, Rhoton SD, Leadem B, Georgia S, Cardon M, Huynh LY, DeShazer D, Harvey SP, Robison R, et al. Tandem repeat regions within the Burkholderia pseudomallei genome and their application for high resolution genotyping. Bmc Microbiology. 7: 23. PMID 17397553 DOI: 10.1186/1471-2180-7-23  0.8
2007 Pearson T, U'Ren JM, Schupp JM, Allan GJ, Foster PG, Mayo MJ, Gal D, Choy JL, Daugherty RL, Kachur S, Friedman CL, Leadem B, Georgia S, Hornstra H, Vogler AJ, et al. VNTR analysis of selected outbreaks of Burkholderia pseudomallei in Australia. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 7: 416-23. PMID 17258514 DOI: 10.1016/J.Meegid.2006.12.002  0.8
2007 Vogler AJ, Keys CE, Allender C, Bailey I, Girard J, Pearson T, Smith KL, Wagner DM, Keim P. Mutations, mutation rates, and evolution at the hypervariable VNTR loci of Yersinia pestis. Mutation Research. 616: 145-58. PMID 17161849 DOI: 10.1016/J.Mrfmmm.2006.11.007  0.8
2007 Van Ert MN, Easterday WR, Simonson TS, U'Ren JM, Pearson T, Kenefic LJ, Busch JD, Huynh LY, Dukerich M, Trim CB, Beaudry J, Welty-Bernard A, Read T, Fraser CM, Ravel J, et al. Strain-specific single-nucleotide polymorphism assays for the Bacillus anthracis Ames strain. Journal of Clinical Microbiology. 45: 47-53. PMID 17093023 DOI: 10.1128/Jcm.01233-06  0.8
2006 Okinaka R, Pearson T, Keim P. Anthrax, but not Bacillus anthracis? Plos Pathogens. 2: e122. PMID 17121463 DOI: 10.1371/journal.ppat.0020122  0.8
2005 U'Ren JM, Van Ert MN, Schupp JM, Easterday WR, Simonson TS, Okinaka RT, Pearson T, Keim P. Use of a real-time PCR TaqMan assay for rapid identification and differentiation of Burkholderia pseudomallei and Burkholderia mallei. Journal of Clinical Microbiology. 43: 5771-4. PMID 16272516 DOI: 10.1128/Jcm.43.11.5771-5774.2005  0.8
2004 Keim P, Van Ert MN, Pearson T, Vogler AJ, Huynh LY, Wagner DM. Anthrax molecular epidemiology and forensics: using the appropriate marker for different evolutionary scales. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 4: 205-13. PMID 15450200 DOI: 10.1016/J.Meegid.2004.02.005  0.8
2004 Pearson T, Busch JD, Ravel J, Read TD, Rhoton SD, U'Ren JM, Simonson TS, Kachur SM, Leadem RR, Cardon ML, Van Ert MN, Huynh LY, Fraser CM, Keim P. Phylogenetic discovery bias in Bacillus anthracis using single-nucleotide polymorphisms from whole-genome sequencing. Proceedings of the National Academy of Sciences of the United States of America. 101: 13536-41. PMID 15347815 DOI: 10.1073/Pnas.0403844101  0.8
2003 Price LB, Vogler A, Pearson T, Busch JD, Schupp JM, Keim P. In vitro selection and characterization of Bacillus anthracis mutants with high-level resistance to ciprofloxacin. Antimicrobial Agents and Chemotherapy. 47: 2362-5. PMID 12821500 DOI: 10.1128/Aac.47.7.2362-2365.2003  0.8
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