Derek A. T. Cummings - Publications

Johns Hopkins University, Baltimore, MD 

105 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 O'Driscoll M, Dos Santos GR, Wang L, Cummings DAT, Azman AS, Paireau J, Fontanet A, Cauchemez S, Salje H. Age-specific mortality and immunity patterns of SARS-CoV-2. Nature. PMID 33137809 DOI: 10.1038/s41586-020-2918-0  0.48
2020 Quandelacy TM, Cummings DAT, Jiang CQ, Yang B, Kwok KO, Dai B, Shen R, Read JM, Zhu H, Guan Y, Riley S, Lessler J. Using serological measures to estimate influenza incidence in the presence of secular trends in exposure and immuno-modulation of antibody response. Influenza and Other Respiratory Viruses. PMID 33108707 DOI: 10.1111/irv.12807  0.36
2020 Huang AT, Garcia-Carreras B, Hitchings MDT, Yang B, Katzelnick LC, Rattigan SM, Borgert BA, Moreno CA, Solomon BD, Trimmer-Smith L, Etienne V, Rodriguez-Barraquer I, Lessler J, Salje H, Burke DS, ... ... Cummings DAT, et al. A systematic review of antibody mediated immunity to coronaviruses: kinetics, correlates of protection, and association with severity. Nature Communications. 11: 4704. PMID 32943637 DOI: 10.1038/s41467-020-18450-4  0.48
2020 Yang B, Lessler J, Zhu H, Jiang CQ, Read JM, Hay JA, Kwok KO, Shen R, Guan Y, Riley S, Cummings DAT. Life course exposures continually shape antibody profiles and risk of seroconversion to influenza. Plos Pathogens. 16: e1008635. PMID 32702069 DOI: 10.1371/journal.ppat.1008635  0.36
2020 Cummings DAT, Radonovich LJ, Gorse GJ, Gaydos CA, Bessesen MT, Brown AC, Gibert CL, Hitchings MDT, Lessler J, Nyquist AC, Rattigan SM, Rodriguez-Barradas MC, Price CS, Reich NG, Simberkoff MS, et al. Risk Factors for Healthcare Personnel Infection with Endemic Coronaviruses (HKU1, OC43, NL63, 229E): Results from the Respiratory Protection Effectiveness Clinical Trial (ResPECT). Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 32645144 DOI: 10.1093/cid/ciaa900  0.36
2020 Clapham H, Hay J, Routledge I, Takahashi S, Choisy M, Cummings D, Grenfell B, Metcalf CJE, Mina M, Barraquer IR, Salje H, Tam CC. Seroepidemiologic Study Designs for Determining SARS-COV-2 Transmission and Immunity. Emerging Infectious Diseases. 26. PMID 32544053 DOI: 10.3201/eid2609.201840  0.48
2020 Huang AT, Garcia-Carreras B, Hitchings MDT, Yang B, Katzelnick LC, Rattigan SM, Borgert BA, Moreno CA, Solomon BD, Rodriguez-Barraquer I, Lessler J, Salje H, Burke D, Wesolowski A, Cummings DAT. A systematic review of antibody mediated immunity to coronaviruses: antibody kinetics, correlates of protection, and association of antibody responses with severity of disease. Medrxiv : the Preprint Server For Health Sciences. PMID 32511434 DOI: 10.1101/2020.04.14.20065771  0.48
2020 Hay JA, Minter A, Ainslie KEC, Lessler J, Yang B, Cummings DAT, Kucharski AJ, Riley S. An open source tool to infer epidemiological and immunological dynamics from serological data: Serosolver. Plos Computational Biology. 16: e1007840. PMID 32365062 DOI: 10.1371/journal.pcbi.1007840  0.36
2020 Wu SL, Sánchez C HM, Henry JM, Citron DT, Zhang Q, Compton K, Liang B, Verma A, Cummings DAT, Le Menach A, Scott TW, Wilson AL, Lindsay SW, Moyes CL, Hancock PA, et al. Vector bionomics and vectorial capacity as emergent properties of mosquito behaviors and ecology. Plos Computational Biology. 16: e1007446. PMID 32320389 DOI: 10.1371/journal.pcbi.1007446  0.32
2020 Yoon IK, Srikiatkhachorn A, Alera MT, Fernandez S, Cummings DAT, Salje H. Pre-existing chikungunya virus neutralizing antibodies correlate with risk of symptomatic infection and subclinical seroconversion in a Philippine cohort. International Journal of Infectious Diseases : Ijid : Official Publication of the International Society For Infectious Diseases. PMID 32247051 DOI: 10.1016/j.ijid.2020.03.073  0.48
2020 Cattarino L, Rodriguez-Barraquer I, Imai N, Cummings DAT, Ferguson NM. Mapping global variation in dengue transmission intensity. Science Translational Medicine. 12. PMID 31996463 DOI: 10.1126/scitranslmed.aax4144  0.48
2019 Borchering RK, Huang AT, Mier-Y-Teran-Romero L, Rojas DP, Rodriguez-Barraquer I, Katzelnick LC, Martinez SD, King GD, Cinkovich SC, Lessler J, Cummings DAT. Impacts of Zika emergence in Latin America on endemic dengue transmission. Nature Communications. 10: 5730. PMID 31844054 DOI: 10.1038/s41467-019-13628-x  0.48
2019 Rodriguez-Barraquer I, Salje H, Cummings DA. Opportunities for improved surveillance and control of dengue from age-specific case data. Elife. 8. PMID 31120419 DOI: 10.7554/eLife.45474  0.48
2019 Ruchusatsawat K, Wongjaroen P, Posanacharoen A, Rodriguez-Barraquer I, Sangkitporn S, Cummings DAT, Salje H. Long-term circulation of Zika virus in Thailand: an observational study. The Lancet. Infectious Diseases. PMID 30826189 DOI: 10.1016/S1473-3099(18)30718-7  0.48
2019 Rodriguez-Barraquer I, Costa F, Nascimento EJM, Nery N, Castanha PMS, Sacramento GA, Cruz J, Carvalho M, De Olivera D, Hagan JE, Adhikarla H, Wunder EA, Coêlho DF, Azar SR, Rossi SL, ... ... Cummings DAT, et al. Impact of preexisting dengue immunity on Zika virus emergence in a dengue endemic region. Science (New York, N.Y.). 363: 607-610. PMID 30733412 DOI: 10.1126/science.aav6618  0.48
2019 Haw DJ, Cummings DAT, Lessler J, Salje H, Read JM, Riley S. Differential mobility and local variation in infection attack rate. Plos Computational Biology. 15: e1006600. PMID 30668575 DOI: 10.1371/journal.pcbi.1006600  0.48
2018 Katzelnick LC, Coello Escoto A, McElvany BD, Chávez C, Salje H, Luo W, Rodriguez-Barraquer I, Jarman R, Durbin AP, Diehl SA, Smith DJ, Whitehead SS, Cummings DAT. Viridot: An automated virus plaque (immunofocus) counter for the measurement of serological neutralizing responses with application to dengue virus. Plos Neglected Tropical Diseases. 12: e0006862. PMID 30356267 DOI: 10.1371/journal.pntd.0006862  0.48
2018 Salje H, Cummings DAT, Rodriguez-Barraquer I, Katzelnick LC, Lessler J, Klungthong C, Thaisomboonsuk B, Nisalak A, Weg A, Ellison D, Macareo L, Yoon IK, Jarman R, Thomas S, Rothman AL, et al. Reconstruction of antibody dynamics and infection histories to evaluate dengue risk. Nature. PMID 29795354 DOI: 10.1038/s41586-018-0157-4  0.48
2017 Grubaugh ND, Ladner JT, Kraemer MUG, Dudas G, Tan AL, Gangavarapu K, Wiley MR, White S, Thézé J, Magnani DM, Prieto K, Reyes D, Bingham AM, Paul LM, Robles-Sikisaka R, ... ... Cummings DAT, et al. Genomic epidemiology reveals multiple introductions of Zika virus into the United States. Nature. PMID 28538723 DOI: 10.1038/nature22400  0.32
2017 Grantz KH, Rane MS, Salje H, Glass GE, Schachterle SE, Cummings DA. Reply to Shanks and Brundage: Many plausible mechanisms of pandemic mortality disparities. Proceedings of the National Academy of Sciences of the United States of America. PMID 28386047 DOI: 10.1073/pnas.1703851114  0.48
2017 Salje H, Lessler J, Maljkovic Berry I, Melendrez MC, Endy T, Kalayanarooj S, A-Nuegoonpipat A, Chanama S, Sangkijporn S, Klungthong C, Thaisomboonsuk B, Nisalak A, Gibbons RV, Iamsirithaworn S, Macareo LR, ... ... Cummings DA, et al. Dengue diversity across spatial and temporal scales: Local structure and the effect of host population size. Science (New York, N.Y.). 355: 1302-1306. PMID 28336667 DOI: 10.1126/science.aaj9384  0.48
2016 Flasche S, Jit M, Rodríguez-Barraquer I, Coudeville L, Recker M, Koelle K, Milne G, Hladish TJ, Perkins TA, Cummings DA, Dorigatti I, Laydon DJ, España G, Kelso J, Longini I, et al. The Long-Term Safety, Public Health Impact, and Cost-Effectiveness of Routine Vaccination with a Recombinant, Live-Attenuated Dengue Vaccine (Dengvaxia): A Model Comparison Study. Plos Medicine. 13: e1002181. PMID 27898668 DOI: 10.1371/journal.pmed.1002181  0.32
2016 Grantz KH, Rane MS, Salje H, Glass GE, Schachterle SE, Cummings DA. Disparities in influenza mortality and transmission related to sociodemographic factors within Chicago in the pandemic of 1918. Proceedings of the National Academy of Sciences of the United States of America. PMID 27872284 DOI: 10.1073/pnas.1612838113  0.48
2016 Salje H, Cummings DA, Lessler J. Estimating infectious disease transmission distances using the overall distribution of cases. Epidemics. 17: 10-18. PMID 27744095 DOI: 10.1016/j.epidem.2016.10.001  0.48
2016 Cauchemez S, Nouvellet P, Cori A, Jombart T, Garske T, Clapham H, Moore S, Mills HL, Salje H, Collins C, Rodriquez-Barraquer I, Riley S, Truelove S, Algarni H, Alhakeem R, ... ... Cummings DA, et al. Unraveling the drivers of MERS-CoV transmission. Proceedings of the National Academy of Sciences of the United States of America. PMID 27457935 DOI: 10.1073/pnas.1519235113  0.48
2016 Lessler J, Chaisson LH, Kucirka LM, Bi Q, Grantz K, Salje H, Carcelen AC, Ott CT, Sheffield JS, Ferguson NM, Cummings DA, Metcalf CJ, Rodriguez-Barraquer I. Assessing the global threat from Zika virus. Science (New York, N.Y.). PMID 27417495 DOI: 10.1126/science.aaf8160  0.48
2016 Truelove S, Zhu H, Lessler J, Riley S, Read JM, Wang S, Kwok KO, Guan Y, Jiang CQ, Cummings DA. A comparison of hemagglutination inhibition and neutralization assays for characterizing immunity to seasonal influenza A. Influenza and Other Respiratory Viruses. PMID 27406695 DOI: 10.1111/irv.12408  0.32
2016 Reich NG, Lauer SA, Sakrejda K, Iamsirithaworn S, Hinjoy S, Suangtho P, Suthachana S, Clapham HE, Salje H, Cummings DA, Lessler J. Challenges in Real-Time Prediction of Infectious Disease: A Case Study of Dengue in Thailand. Plos Neglected Tropical Diseases. 10: e0004761. PMID 27304062 DOI: 10.1371/journal.pntd.0004761  0.48
2016 Radonovich LJ, Bessesen MT, Cummings DA, Eagan A, Gaydos C, Gibert C, Gorse GJ, Nyquist AC, Reich NG, Rodrigues-Barradas M, Savor-Price C, Shaffer RE, Simberkoff MS, Perl TM. The Respiratory Protection Effectiveness Clinical Trial (ResPECT): a cluster-randomized comparison of respirator and medical mask effectiveness against respiratory infections in healthcare personnel. Bmc Infectious Diseases. 16: 243. PMID 27255755 DOI: 10.1186/s12879-016-1494-2  0.32
2016 Lessler J, Salje H, Grabowski MK, Cummings DA. Measuring Spatial Dependence for Infectious Disease Epidemiology. Plos One. 11: e0155249. PMID 27196422 DOI: 10.1371/journal.pone.0155249  0.48
2016 Rodriguez-Barraquer I, Salje H, Cummings DA. Dengue Vaccine in Regions of Endemic Disease. The New England Journal of Medicine. 374: 1388. PMID 27050220 DOI: 10.1056/NEJMc1514451#SA1  0.48
2016 Nisalak A, Clapham HE, Kalayanarooj S, Klungthong C, Thaisomboonsuk B, Fernandez S, Reiser J, Srikiatkhachorn A, Macareo LR, Lessler JT, Cummings DA, Yoon IK. Forty Years of Dengue Surveillance at a Tertiary Pediatric Hospital in Bangkok, Thailand, 1973-2012. The American Journal of Tropical Medicine and Hygiene. PMID 27022151 DOI: 10.4269/ajtmh.15-0337  0.32
2016 Guclu H, Read J, Vukotich CJ, Galloway DD, Gao H, Rainey JJ, Uzicanin A, Zimmer SM, Cummings DA. Social Contact Networks and Mixing among Students in K-12 Schools in Pittsburgh, PA. Plos One. 11: e0151139. PMID 26978780 DOI: 10.1371/journal.pone.0151139  0.32
2016 Lessler J, Salje H, Van Kerkhove MD, Ferguson NM, Cauchemez S, Rodriquez-Barraquer I, Hakeem R, Jombart T, Aguas R, Al-Barrak A, Cummings DA. Estimating the Severity and Subclinical Burden of Middle East Respiratory Syndrome Coronavirus Infection in the Kingdom of Saudi Arabia. American Journal of Epidemiology. PMID 26851269 DOI: 10.1093/aje/kwv452  0.48
2016 Chadsuthi S, Iamsirithaworn S, Triampo W, Cummings DA. The impact of rainfall and temperature on the spatial progression of cases during the chikungunya re-emergence in Thailand in 2008-2009. Transactions of the Royal Society of Tropical Medicine and Hygiene. 110: 125-33. PMID 26822605 DOI: 10.1093/trstmh/trv114  0.32
2015 Clapham HE, Rodriguez-Barraquer I, Azman AS, Althouse BM, Salje H, Gibbons RV, Rothman A, Jarman RG, Nisalak A, Thaisomboonsuk B, Kalayanarooj S, Nimmannitya S, Vaughn DW, Green S, Yoon IK, ... Cummings DA, et al. Dengue neutralizing antibody kinetics in children after symptomatic primary and post-primary dengue virus infections. The Journal of Infectious Diseases. PMID 26704615 DOI: 10.1093/infdis/jiv759  0.32
2015 Rodríguez-Barraquer I, Solomon SS, Kuganantham P, Srikrishnan AK, Vasudevan CK, Iqbal SH, Balakrishnan P, Solomon S, Mehta SH, Cummings DA. The Hidden Burden of Dengue and Chikungunya in Chennai, India. Plos Neglected Tropical Diseases. 9: e0003906. PMID 26181441 DOI: 10.1371/journal.pntd.0003906  0.32
2015 Rodriguez-Barraquer I, Mier-y-Teran-Romero L, Ferguson N, Burke DS, Cummings DA. Differential efficacy of dengue vaccine by immune status. Lancet (London, England). 385: 1726. PMID 25943936 DOI: 10.1016/S0140-6736(15)60889-3  0.32
2015 Kucharski AJ, Lessler J, Read JM, Zhu H, Jiang CQ, Guan Y, Cummings DA, Riley S. Estimating the life course of influenza A(H3N2) antibody responses from cross-sectional data. Plos Biology. 13: e1002082. PMID 25734701 DOI: 10.1371/journal.pbio.1002082  0.32
2015 Reich NG, Cummings DA, Lauer SA, Zorn M, Robinson C, Nyquist AC, Price CS, Simberkoff M, Radonovich LJ, Perl TM. Triggering interventions for influenza: the ALERT algorithm. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 60: 499-504. PMID 25414260 DOI: 10.1093/cid/ciu749  0.32
2015 Althouse BM, Hanley KA, Diallo M, Sall AA, Ba Y, Faye O, Diallo D, Watts DM, Weaver SC, Cummings DA. Impact of climate and mosquito vector abundance on sylvatic arbovirus circulation dynamics in Senegal. The American Journal of Tropical Medicine and Hygiene. 92: 88-97. PMID 25404071 DOI: 10.4269/ajtmh.13-0617  0.32
2014 Lessler J, Rodriguez-Barraquer I, Cummings DA, Garske T, Van Kerkhove M, Mills H, Truelove S, Hakeem R, Albarrak A, Ferguson NM. Estimating Potential Incidence of MERS-CoV Associated with Hajj Pilgrims to Saudi Arabia, 2014. Plos Currents. 6. PMID 25685624 DOI: 10.1371/currents.outbreaks.c5c9c9abd636164a9b6fd4dbda974369  0.48
2014 Bhoomiboonchoo P, Gibbons RV, Huang A, Yoon IK, Buddhari D, Nisalak A, Chansatiporn N, Thipayamongkolgul M, Kalanarooj S, Endy T, Rothman AL, Srikiatkhachorn A, Green S, Mammen MP, Cummings DA, et al. The spatial dynamics of dengue virus in Kamphaeng Phet, Thailand. Plos Neglected Tropical Diseases. 8: e3138. PMID 25211127 DOI: 10.1371/journal.pntd.0003138  0.32
2014 Kwok KO, Cowling BJ, Wei VW, Wu KM, Read JM, Lessler J, Cummings DA, Peiris JS, Riley S. Social contacts and the locations in which they occur as risk factors for influenza infection. Proceedings. Biological Sciences / the Royal Society. 281: 20140709. PMID 25009062 DOI: 10.1098/rspb.2014.0709  0.32
2014 Velasco JM, Alera MT, Ypil-Cardenas CA, Dimaano EM, Jarman RG, Chinnawirotpisan P, Thaisomboonsuk B, Yoon IK, Cummings DA, Mammen MP. Demographic, clinical and laboratory findings among adult and pediatric patients hospitalized with dengue in the Philippines. The Southeast Asian Journal of Tropical Medicine and Public Health. 45: 337-45. PMID 24968673  0.32
2014 Kucharski AJ, Kwok KO, Wei VW, Cowling BJ, Read JM, Lessler J, Cummings DA, Riley S. The contribution of social behaviour to the transmission of influenza A in a human population. Plos Pathogens. 10: e1004206. PMID 24968312 DOI: 10.1371/journal.ppat.1004206  0.32
2014 Salje H, Rodríguez-Barraquer I, Rainwater-Lovett K, Nisalak A, Thaisomboonsuk B, Thomas SJ, Fernandez S, Jarman RG, Yoon IK, Cummings DA. Variability in dengue titer estimates from plaque reduction neutralization tests poses a challenge to epidemiological studies and vaccine development. Plos Neglected Tropical Diseases. 8: e2952. PMID 24967885 DOI: 10.1371/journal.pntd.0002952  0.32
2014 Ferguson NM, Cummings DA. How season and serotype determine dengue transmissibility. Proceedings of the National Academy of Sciences of the United States of America. 111: 9370-1. PMID 24927557 DOI: 10.1073/pnas.1407648111  0.32
2014 Read JM, Lessler J, Riley S, Wang S, Tan LJ, Kwok KO, Guan Y, Jiang CQ, Cummings DA. Social mixing patterns in rural and urban areas of southern China. Proceedings. Biological Sciences / the Royal Society. 281: 20140268. PMID 24789897 DOI: 10.1098/rspb.2014.0268  0.32
2014 Rudolph KE, Lessler J, Moloney RM, Kmush B, Cummings DA. Incubation periods of mosquito-borne viral infections: a systematic review. The American Journal of Tropical Medicine and Hygiene. 90: 882-91. PMID 24639305 DOI: 10.4269/ajtmh.13-0403  0.32
2014 Althouse BM, Durbin AP, Hanley KA, Halstead SB, Weaver SC, Cummings DA. Viral kinetics of primary dengue virus infection in non-human primates: a systematic review and individual pooled analysis. Virology. 452: 237-46. PMID 24606701 DOI: 10.1016/j.virol.2014.01.015  0.32
2014 Grabowski MK, Lessler J, Redd AD, Kagaayi J, Laeyendecker O, Ndyanabo A, Nelson MI, Cummings DA, Bwanika JB, Mueller AC, Reynolds SJ, Munshaw S, Ray SC, Lutalo T, Manucci J, et al. The role of viral introductions in sustaining community-based HIV epidemics in rural Uganda: evidence from spatial clustering, phylogenetics, and egocentric transmission models. Plos Medicine. 11: e1001610. PMID 24595023 DOI: 10.1371/journal.pmed.1001610  0.32
2014 Smith DL, Perkins TA, Reiner RC, Barker CM, Niu T, Chaves LF, Ellis AM, George DB, Le Menach A, Pulliam JR, Bisanzio D, Buckee C, Chiyaka C, Cummings DA, Garcia AJ, et al. Recasting the theory of mosquito-borne pathogen transmission dynamics and control. Transactions of the Royal Society of Tropical Medicine and Hygiene. 108: 185-97. PMID 24591453 DOI: 10.1093/trstmh/tru026  0.32
2014 Rodriguez-Barraquer I, Mier-y-Teran-Romero L, Schwartz IB, Burke DS, Cummings DA. Potential opportunities and perils of imperfect dengue vaccines. Vaccine. 32: 514-20. PMID 24269318 DOI: 10.1016/j.vaccine.2013.11.020  0.32
2014 Rodríguez-Barraquer I, Buathong R, Iamsirithaworn S, Nisalak A, Lessler J, Jarman RG, Gibbons RV, Cummings DA. Revisiting Rayong: shifting seroprofiles of dengue in Thailand and their implications for transmission and control. American Journal of Epidemiology. 179: 353-60. PMID 24197388 DOI: 10.1093/aje/kwt256  0.32
2014 Liu SH, Cummings DA, Zenilman JM, Gravitt PE, Brotman RM. Characterizing the temporal dynamics of human papillomavirus DNA detectability using short-interval sampling. Cancer Epidemiology, Biomarkers & Prevention : a Publication of the American Association For Cancer Research, Cosponsored by the American Society of Preventive Oncology. 23: 200-8. PMID 24130223 DOI: 10.1158/1055-9965.EPI-13-0666  0.32
2014 Anderson KB, Gibbons RV, Cummings DA, Nisalak A, Green S, Libraty DH, Jarman RG, Srikiatkhachorn A, Mammen MP, Darunee B, Yoon IK, Endy TP. A shorter time interval between first and second dengue infections is associated with protection from clinical illness in a school-based cohort in Thailand. The Journal of Infectious Diseases. 209: 360-8. PMID 23964110 DOI: 10.1093/infdis/jit436  0.32
2014 Perkins TA, Reiner RC, Rodriguez-Barraquer I, Smith DL, Scott TW, Cummings DAT. A review of transmission models of dengue: A quantitative and qualitative analysis of model features Dengue and Dengue Hemorrhagic Fever: Second Edition. 99-114.  0.32
2013 Azman AS, Stark JH, Althouse BM, Vukotich CJ, Stebbins S, Burke DS, Cummings DA. Household transmission of influenza A and B in a school-based study of non-pharmaceutical interventions. Epidemics. 5: 181-6. PMID 24267874 DOI: 10.1016/j.epidem.2013.09.001  0.32
2013 Word DP, Young JK, Cummings DA, Iamsirithaworn S, Laird CD. Interior-point methods for estimating seasonal parameters in discrete-time infectious disease models. Plos One. 8: e74208. PMID 24167542 DOI: 10.1371/journal.pone.0074208  0.32
2013 Lee RM, Lessler J, Lee RA, Rudolph KE, Reich NG, Perl TM, Cummings DA. Incubation periods of viral gastroenteritis: a systematic review. Bmc Infectious Diseases. 13: 446. PMID 24066865 DOI: 10.1186/1471-2334-13-446  0.32
2013 Rodriguez-Barraquer I, Mier-y-Teran-Romero L, Burke DS, Cummings DA. Challenges in the interpretation of dengue vaccine trial results. Plos Neglected Tropical Diseases. 7: e2126. PMID 24009782 DOI: 10.1371/journal.pntd.0002126  0.32
2013 Liu SH, Brotman RM, Zenilman JM, Gravitt PE, Cummings DA. Menstrual cycle and detectable human papillomavirus in reproductive-age women: a time series study. The Journal of Infectious Diseases. 208: 1404-15. PMID 23885113 DOI: 10.1093/infdis/jit337  0.32
2013 Reich NG, Shrestha S, King AA, Rohani P, Lessler J, Kalayanarooj S, Yoon IK, Gibbons RV, Burke DS, Cummings DA. Interactions between serotypes of dengue highlight epidemiological impact of cross-immunity. Journal of the Royal Society, Interface / the Royal Society. 10: 20130414. PMID 23825116 DOI: 10.1098/rsif.2013.0414  0.32
2013 Assiri A, McGeer A, Perl TM, Price CS, Al Rabeeah AA, Cummings DA, Alabdullatif ZN, Assad M, Almulhim A, Makhdoom H, Madani H, Alhakeem R, Al-Tawfiq JA, Cotten M, Watson SJ, et al. Hospital outbreak of Middle East respiratory syndrome coronavirus. The New England Journal of Medicine. 369: 407-16. PMID 23782161 DOI: 10.1056/NEJMoa1306742  0.32
2013 Blackwood JC, Cummings DA, Broutin H, Iamsirithaworn S, Rohani P. Deciphering the impacts of vaccination and immunity on pertussis epidemiology in Thailand. Proceedings of the National Academy of Sciences of the United States of America. 110: 9595-600. PMID 23690587 DOI: 10.1073/pnas.1220908110  0.32
2013 Meltzer AC, Pierce R, Cummings DA, Pines JM, May L, Smith MA, Marcotte J, McCarthy ML. Rapid (13)C Urea Breath Test to Identify Helicobacter pylori Infection in Emergency Department Patients with Upper Abdominal Pain. The Western Journal of Emergency Medicine. 14: 278-82. PMID 23687549 DOI: 10.5811/westjem.2012.12.15173  0.32
2013 Mier-y-Teran-Romero L, Schwartz IB, Cummings DA. Breaking the symmetry: immune enhancement increases persistence of dengue viruses in the presence of asymmetric transmission rates. Journal of Theoretical Biology. 332: 203-10. PMID 23665358 DOI: 10.1016/j.jtbi.2013.04.036  0.32
2013 Reiner RC, Perkins TA, Barker CM, Niu T, Chaves LF, Ellis AM, George DB, Le Menach A, Pulliam JR, Bisanzio D, Buckee C, Chiyaka C, Cummings DA, Garcia AJ, Gatton ML, et al. A systematic review of mathematical models of mosquito-borne pathogen transmission: 1970-2010. Journal of the Royal Society, Interface / the Royal Society. 10: 20120921. PMID 23407571 DOI: 10.1098/rsif.2012.0921  0.32
2013 Azman AS, Rudolph KE, Cummings DA, Lessler J. The incubation period of cholera: a systematic review. The Journal of Infection. 66: 432-8. PMID 23201968 DOI: 10.1016/j.jinf.2012.11.013  0.32
2012 Althouse BM, Lessler J, Sall AA, Diallo M, Hanley KA, Watts DM, Weaver SC, Cummings DA. Synchrony of sylvatic dengue isolations: a multi-host, multi-vector SIR model of dengue virus transmission in Senegal. Plos Neglected Tropical Diseases. 6: e1928. PMID 23209867 DOI: 10.1371/journal.pntd.0001928  0.32
2012 Rainwater-Lovett K, Rodriguez-Barraquer I, Cummings DA, Lessler J. Variation in dengue virus plaque reduction neutralization testing: systematic review and pooled analysis. Bmc Infectious Diseases. 12: 233. PMID 23020074 DOI: 10.1186/1471-2334-12-233  0.32
2012 Stark JH, Cummings DA, Ermentrout B, Ostroff S, Sharma R, Stebbins S, Burke DS, Wisniewski SR. Local variations in spatial synchrony of influenza epidemics. Plos One. 7: e43528. PMID 22916274 DOI: 10.1371/journal.pone.0043528  0.32
2012 Salje H, Lessler J, Endy TP, Curriero FC, Gibbons RV, Nisalak A, Nimmannitya S, Kalayanarooj S, Jarman RG, Thomas SJ, Burke DS, Cummings DA. Revealing the microscale spatial signature of dengue transmission and immunity in an urban population. Proceedings of the National Academy of Sciences of the United States of America. 109: 9535-8. PMID 22645364 DOI: 10.1073/pnas.1120621109  0.48
2012 Stark JH, Sharma R, Ostroff S, Cummings DA, Ermentrout B, Stebbins S, Burke DS, Wisniewski SR. Local spatial and temporal processes of influenza in Pennsylvania, USA: 2003-2009. Plos One. 7: e34245. PMID 22470544 DOI: 10.1371/journal.pone.0034245  0.32
2012 Word DP, Cummings DA, Burke DS, Iamsirithaworn S, Laird CD. A nonlinear programming approach for estimation of transmission parameters in childhood infectious disease using a continuous time model. Journal of the Royal Society, Interface / the Royal Society. 9: 1983-97. PMID 22337634 DOI: 10.1098/rsif.2011.0829  0.32
2012 Reich NG, Lessler J, Cummings DA, Brookmeyer R. Estimating absolute and relative case fatality ratios from infectious disease surveillance data. Biometrics. 68: 598-606. PMID 22276951 DOI: 10.1111/j.1541-0420.2011.01709.x  0.32
2011 Lessler J, Metcalf CJ, Grais RF, Luquero FJ, Cummings DA, Grenfell BT. Measuring the performance of vaccination programs using cross-sectional surveys: a likelihood framework and retrospective analysis. Plos Medicine. 8: e1001110. PMID 22039353 DOI: 10.1371/journal.pmed.1001110  0.32
2011 Althouse BM, Ng YY, Cummings DA. Prediction of dengue incidence using search query surveillance. Plos Neglected Tropical Diseases. 5: e1258. PMID 21829744 DOI: 10.1371/journal.pntd.0001258  0.32
2011 Johansson MA, Hombach J, Cummings DA. Models of the impact of dengue vaccines: a review of current research and potential approaches. Vaccine. 29: 5860-8. PMID 21699949 DOI: 10.1016/j.vaccine.2011.06.042  0.32
2011 Stebbins S, Cummings DA, Stark JH, Vukotich C, Mitruka K, Thompson W, Rinaldo C, Roth L, Wagner M, Wisniewski SR, Dato V, Eng H, Burke DS. Reduction in the incidence of influenza A but not influenza B associated with use of hand sanitizer and cough hygiene in schools: a randomized controlled trial. The Pediatric Infectious Disease Journal. 30: 921-6. PMID 21691245 DOI: 10.1097/INF.0b013e3182218656  0.32
2011 Stebbins S, Stark JH, Prasad R, Thompson WW, Mitruka K, Rinaldo C, Vukotich CJ, Cummings DA. Sensitivity and specificity of rapid influenza testing of children in a community setting. Influenza and Other Respiratory Viruses. 5: 104-9. PMID 21306573 DOI: 10.1111/j.1750-2659.2010.00171.x  0.32
2011 Rodriguez-Barraquer I, Cordeiro MT, Braga C, de Souza WV, Marques ET, Cummings DA. From re-emergence to hyperendemicity: the natural history of the dengue epidemic in Brazil. Plos Neglected Tropical Diseases. 5: e935. PMID 21245922 DOI: 10.1371/journal.pntd.0000935  0.32
2010 Yang Y, Halloran ME, Daniels MJ, Longini IM, Burke DS, Cummings DA. Modeling Competing Infectious Pathogens from a Bayesian Perspective: Application to Influenza Studies with Incomplete Laboratory Results. Journal of the American Statistical Association. 105: 1310-1322. PMID 21472041 DOI: 10.1198/jasa.2010.ap09581  0.32
2010 Lessler J, dos Santos T, Aguilera X, Brookmeyer R, Cummings DA. H1N1pdm in the Americas. Epidemics. 2: 132-8. PMID 20847900 DOI: 10.1016/j.epidem.2010.07.001  0.32
2010 van Panhuis WG, Gibbons RV, Endy TP, Rothman AL, Srikiatkhachorn A, Nisalak A, Burke DS, Cummings DA. Inferring the serotype associated with dengue virus infections on the basis of pre- and postinfection neutralizing antibody titers. The Journal of Infectious Diseases. 202: 1002-10. PMID 20738205 DOI: 10.1086/656141  0.32
2010 Lessler J, Brookmeyer R, Reich NG, Nelson KE, Cummings DA, Perl TM. Identifying the probable timing and setting of respiratory virus infections. Infection Control and Hospital Epidemiology. 31: 809-15. PMID 20569117 DOI: 10.1086/655023  0.32
2010 Fried JR, Gibbons RV, Kalayanarooj S, Thomas SJ, Srikiatkhachorn A, Yoon IK, Jarman RG, Green S, Rothman AL, Cummings DA. Serotype-specific differences in the risk of dengue hemorrhagic fever: an analysis of data collected in Bangkok, Thailand from 1994 to 2006. Plos Neglected Tropical Diseases. 4: e617. PMID 20209155 DOI: 10.1371/journal.pntd.0000617  0.32
2010 Solomon BD, Lacbawan F, Mercier S, Clegg NJ, Delgado MR, Rosenbaum K, Dubourg C, David V, Olney AH, Wehner LE, Hehr U, Bale S, Paulussen A, Smeets HJ, Hardisty E, ... ... Cummings DA, et al. Mutations in ZIC2 in human holoprosencephaly: description of a novel ZIC2 specific phenotype and comprehensive analysis of 157 individuals. Journal of Medical Genetics. 47: 513-24. PMID 19955556 DOI: 10.1136/jmg.2009.073049  0.32
2010 Word DP, Young JK, Cummings D, Laird CD. Estimation of seasonal transmission parameters in childhood infectious disease using a stochastic continuous time model Computer Aided Chemical Engineering. 28: 229-234. DOI: 10.1016/S1570-7946(10)28039-2  0.32
2009 Lessler J, Reich NG, Cummings DA, Nair HP, Jordan HT, Thompson N. Outbreak of 2009 pandemic influenza A (H1N1) at a New York City school. The New England Journal of Medicine. 361: 2628-36. PMID 20042754 DOI: 10.1056/NEJMoa0906089  0.32
2009 Johansson MA, Cummings DA, Glass GE. Multiyear climate variability and dengue--El Niño southern oscillation, weather, and dengue incidence in Puerto Rico, Mexico, and Thailand: a longitudinal data analysis. Plos Medicine. 6: e1000168. PMID 19918363 DOI: 10.1371/journal.pmed.1000168  0.32
2009 Cummings DA, Iamsirithaworn S, Lessler JT, McDermott A, Prasanthong R, Nisalak A, Jarman RG, Burke DS, Gibbons RV. The impact of the demographic transition on dengue in Thailand: insights from a statistical analysis and mathematical modeling. Plos Medicine. 6: e1000139. PMID 19721696 DOI: 10.1371/journal.pmed.1000139  0.32
2009 Reich NG, Lessler J, Cummings DA, Brookmeyer R. Estimating incubation period distributions with coarse data. Statistics in Medicine. 28: 2769-84. PMID 19598148 DOI: 10.1002/sim.3659  0.32
2009 Lessler J, Reich NG, Brookmeyer R, Perl TM, Nelson KE, Cummings DA. Incubation periods of acute respiratory viral infections: a systematic review. The Lancet. Infectious Diseases. 9: 291-300. PMID 19393959 DOI: 10.1016/S1473-3099(09)70069-6  0.32
2008 Halloran ME, Ferguson NM, Eubank S, Longini IM, Cummings DA, Lewis B, Xu S, Fraser C, Vullikanti A, Germann TC, Wagener D, Beckman R, Kadau K, Barrett C, Macken CA, et al. Modeling targeted layered containment of an influenza pandemic in the United States. Proceedings of the National Academy of Sciences of the United States of America. 105: 4639-44. PMID 18332436 DOI: 10.1073/pnas.0706849105  0.32
2007 Billings L, Schwartz IB, Shaw LB, McCrary M, Burke DS, Cummings DA. Instabilities in multiserotype disease models with antibody-dependent enhancement. Journal of Theoretical Biology. 246: 18-27. PMID 17270219 DOI: 10.1016/j.jtbi.2006.12.023  0.32
2007 Longini IM, Halloran ME, Nizam A, Yang Y, Xu S, Burke DS, Cummings DA, Epstein JM. Containing a large bioterrorist smallpox attack: a computer simulation approach. International Journal of Infectious Diseases : Ijid : Official Publication of the International Society For Infectious Diseases. 11: 98-108. PMID 16899385 DOI: 10.1016/j.ijid.2006.03.002  0.32
2006 Burke DS, Epstein JM, Cummings DA, Parker JI, Cline KC, Singa RM, Chakravarty S. Individual-based computational modeling of smallpox epidemic control strategies. Academic Emergency Medicine : Official Journal of the Society For Academic Emergency Medicine. 13: 1142-9. PMID 17085740 DOI: 10.1197/j.aem.2006.07.017  0.32
2006 Cummings DA, Moss WJ, Long K, Wiysonge CS, Muluh TJ, Kollo B, Nomo E, Wolfe ND, Burke DS. Improved measles surveillance in Cameroon reveals two major dynamic patterns of incidence. International Journal of Infectious Diseases : Ijid : Official Publication of the International Society For Infectious Diseases. 10: 148-55. PMID 16275043 DOI: 10.1016/j.ijid.2004.10.010  0.32
2005 Schwartz IB, Shaw LB, Cummings DA, Billings L, McCrary M, Burke DS. Chaotic desynchronization of multistrain diseases. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 72: 066201. PMID 16486034 DOI: 10.1103/PhysRevE.72.066201  0.32
2005 Cummings DA, Schwartz IB, Billings L, Shaw LB, Burke DS. Dynamic effects of antibody-dependent enhancement on the fitness of viruses. Proceedings of the National Academy of Sciences of the United States of America. 102: 15259-64. PMID 16217017 DOI: 10.1073/pnas.0507320102  0.32
2005 Ferguson NM, Cummings DA, Cauchemez S, Fraser C, Riley S, Meeyai A, Iamsirithaworn S, Burke DS. Strategies for containing an emerging influenza pandemic in Southeast Asia. Nature. 437: 209-14. PMID 16079797 DOI: 10.1038/nature04017  0.32
2005 Longini IM, Nizam A, Xu S, Ungchusak K, Hanshaoworakul W, Cummings DA, Halloran ME. Containing pandemic influenza at the source. Science (New York, N.Y.). 309: 1083-7. PMID 16079251 DOI: 10.1126/science.1115717  0.32
2004 Cummings DA, Irizarry RA, Huang NE, Endy TP, Nisalak A, Ungchusak K, Burke DS. Travelling waves in the occurrence of dengue haemorrhagic fever in Thailand. Nature. 427: 344-7. PMID 14737166 DOI: 10.1038/nature02225  0.32
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