Tianxi Cai - Publications

Affiliations: 
Biostatistics Harvard University, Cambridge, MA, United States 
Area:
Biostatistics Biology, Epidemiology

152 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Parast L, Tian L, Cai T. Assessing heterogeneity in surrogacy using censored data. Statistics in Medicine. PMID 38812276 DOI: 10.1002/sim.10122  0.656
2024 Parast L, Cai T, Tian L. A rank-based approach to evaluate a surrogate marker in a small sample setting. Biometrics. 80. PMID 38386359 DOI: 10.1093/biomtc/ujad035  0.607
2023 Parast L, Tian L, Cai T, Palaniappan L. Statistical Methods to Evaluate Surrogate Markers. Medical Care. PMID 38079232 DOI: 10.1097/MLR.0000000000001956  0.58
2023 Zheng Y, Lu T, Cai T. EFFICIENT AND ROBUST ESTIMATION OF -YEAR RISK PREDICTION MODELS LEVERAGING TIME VARYING INTERMEDIATE OUTCOMES. Statistica Sinica. 31: 1531-1547. PMID 38075983 DOI: 10.5705/ss.202019.0066  0.331
2023 Parast L, Tian L, Cai T, Palaniappan LP. Can earlier biomarker measurements explain a treatment effect on diabetes incidence? A robust comparison of five surrogate markers. Bmj Open Diabetes Research & Care. 11. PMID 37907279 DOI: 10.1136/bmjdrc-2023-003585  0.56
2022 Parast L, Cai T, Tian L. Using a surrogate with heterogeneous utility to test for a treatment effect. Statistics in Medicine. PMID 36372072 DOI: 10.1002/sim.9602  0.629
2022 Gronsbell J, Liu M, Tian L, Cai T. Efficient Evaluation of Prediction Rules in Semi-Supervised Settings under Stratified Sampling. Journal of the Royal Statistical Society. Series B, Statistical Methodology. 84: 1353-1391. PMID 36275859 DOI: 10.1111/rssb.12502  0.302
2022 Han L, Wang X, Cai T. Identifying surrogate markers in real-world comparative effectiveness research. Statistics in Medicine. PMID 36062392 DOI: 10.1002/sim.9569  0.328
2022 Wang X, Parast L, Han L, Tian L, Cai T. Robust approach to combining multiple markers to improve surrogacy. Biometrics. PMID 35426444 DOI: 10.1111/biom.13677  0.641
2021 Parast L, Cai T, Tian L. Testing for heterogeneity in the utility of a surrogate marker. Biometrics. PMID 34874550 DOI: 10.1111/biom.13600  0.646
2021 Hou J, Chan SF, Wang X, Cai T. Risk prediction with imperfect survival outcome information from electronic health records. Biometrics. PMID 34747010 DOI: 10.1111/biom.13599  0.321
2021 Wang X, Cai T, Tian L, Bourgeois F, Parast L. Quantifying the feasibility of shortening clinical trial duration using surrogate markers. Statistics in Medicine. PMID 34474500 DOI: 10.1002/sim.9185  0.654
2020 Parast L, Cai T, Tian L. Evaluating multiple surrogate markers with censored data. Biometrics. PMID 32920821 DOI: 10.1111/Biom.13370  0.679
2020 Hong C, Wang Y, Cai T. A divide-and-conquer method for sparse risk prediction and evaluation. Biostatistics (Oxford, England). PMID 32909599 DOI: 10.1093/Biostatistics/Kxaa031  0.446
2020 Wang X, Parast L, Tian LU, Cai T. Model-free approach to quantifying the proportion of treatment effect explained by a surrogate marker. Biometrika. 107: 107-122. PMID 32587413 DOI: 10.1093/Biomet/Asz065  0.676
2020 Chan S, Wang X, Jazić I, Peskoe S, Zheng Y, Cai T. Developing and evaluating risk prediction models with panel current status data. Biometrics. PMID 32562264 DOI: 10.1111/Biom.13317  0.419
2020 Ahuja Y, Zhou D, He Z, Sun J, Castro VM, Gainer V, Murphy SN, Hong C, Cai T. sureLDA: A multidisease automated phenotyping method for the electronic health record. Journal of the American Medical Informatics Association : Jamia. PMID 32548637 DOI: 10.1093/Jamia/Ocaa079  0.319
2020 Cheng D, Ananthakrishnan AN, Cai T. Robust and efficient semi-supervised estimation of average treatment effects with application to electronic health records data. Biometrics. PMID 32413171 DOI: 10.1111/Biom.13298  0.425
2020 Yuan Q, Cai T, Hong C, Cai T, Christiani D. Abstract 2118: Using electronic medical records to assemble a lung cancer cohort for prognosis study Cancer Research. 80: 2118-2118. DOI: 10.1158/1538-7445.Am2020-2118  0.32
2019 Cai T, Cai TT, Liao K, Liu W. Large-Scale Simultaneous Testing of Cross-Covariance Matrices with Applications to PheWAS. Statistica Sinica. 29: 983-1005. PMID 31889766 DOI: 10.5705/Ss.202017.0189  0.344
2019 Cheng D, Chakrabortty A, Ananthakrishnan AN, Cai T. Estimating average treatment effects with a double-index propensity score. Biometrics. PMID 31797368 DOI: 10.1111/Biom.13195  0.409
2019 Zhang Y, Cai T, Yu S, Cho K, Hong C, Sun J, Huang J, Ho YL, Ananthakrishnan AN, Xia Z, Shaw SY, Gainer V, Castro V, Link N, Honerlaw J, ... ... Cai T, et al. High-throughput phenotyping with electronic medical record data using a common semi-supervised approach (PheCAP). Nature Protocols. PMID 31748751 DOI: 10.1038/S41596-019-0227-6  0.357
2019 Liao KP, Sun J, Cai TA, Link N, Hong C, Huang J, Huffman JE, Gronsbell J, Zhang Y, Ho YL, Castro V, Gainer V, Murphy SN, O'Donnell CJ, Gaziano JM, ... ... Cai T, et al. High-throughput multimodal automated phenotyping (MAP) with application to PheWAS. Journal of the American Medical Informatics Association : Jamia. 26: 1255-1262. PMID 31613361 DOI: 10.1093/Jamia/Ocz066  0.303
2019 Wang Y, Hong C, Palmer N, Di Q, Schwartz J, Kohane I, Cai T. A fast divide-and-conquer sparse Cox regression. Biostatistics (Oxford, England). PMID 31545341 DOI: 10.1093/Biostatistics/Kxz036  0.343
2019 Ananthakrishnan AN, Cagan A, Cai T, Gainer VS, Savova G, Shaw SY, Churchill S, Burke KE, Karlson EW, Murphy SN, Kohane I, Liao KP, Xavier RJ. Use of narrative concepts in the EHR to validate genetic determinants of treatment response in a virtual inflammatory bowel disease cohort. Clinical Gastroenterology and Hepatology : the Official Clinical Practice Journal of the American Gastroenterological Association. PMID 31404664 DOI: 10.1016/J.Cgh.2019.08.005  0.355
2019 Parast L, Cai T, Tian L. Using a surrogate marker for early testing of a treatment effect. Biometrics. PMID 31009073 DOI: 10.1111/Biom.13067  0.668
2019 Parast L, Tian L, Cai T. Assessing the value of a censored surrogate outcome. Lifetime Data Analysis. PMID 30980316 DOI: 10.1007/S10985-019-09473-1  0.652
2019 Chan SF, Hejblum BP, Chakrabortty A, Cai T. Semi-supervised estimation of covariance with application to phenome-wide association studies with electronic medical records data. Statistical Methods in Medical Research. 962280219837676. PMID 30943854 DOI: 10.1177/0962280219837676  0.401
2019 Ning W, Chan S, Beam A, Yu M, Geva A, Liao K, Mullen M, Mandl KD, Kohane I, Cai T, Yu S. f(1Feature Extraction for Phenotyping from Semantic and Knowledge Resources. Journal of Biomedical Informatics. 103122. PMID 30738949 DOI: 10.1016/J.Jbi.2019.103122  0.334
2019 Hejblum BP, Weber GM, Liao KP, Palmer NP, Churchill S, Shadick NA, Szolovits P, Murphy SN, Kohane IS, Cai T. Probabilistic record linkage of de-identified research datasets with discrepancies using diagnosis codes. Scientific Data. 6: 180298. PMID 30620344 DOI: 10.1038/Sdata.2018.298  0.318
2019 Cai T, Tian L, Uno H, Solomon SD, Wei LJ. Calibrating parametric subject-specific risk estimation. Biometrika. 97: 389-404. PMID 23049123 DOI: 10.1093/Biomet/Asq012  0.401
2018 Agniel D, Xie W, Essex M, Cai T. FUNCTIONAL PRINCIPAL VARIANCE COMPONENT TESTING FOR A GENETIC ASSOCIATION STUDY OF HIV PROGRESSION. The Annals of Applied Statistics. 12: 1871-1893. PMID 32256927 DOI: 10.1214/18-Aoas1135  0.651
2018 Liu D, Cai T, Lok A, Zheng Y. Nonparametric Maximum Likelihood Estimators of Time-Dependent Accuracy Measures for Survival Outcome Under Two-Stage Sampling Designs. Journal of the American Statistical Association. 113: 882-892. PMID 30555194 DOI: 10.1080/01621459.2017.1295866  0.377
2018 Goodman MO, Chibnik L, Cai T. Variance components genetic association test for zero-inflated count outcomes. Genetic Epidemiology. PMID 30353568 DOI: 10.1002/Gepi.22162  0.36
2018 Gronsbell J, Minnier J, Yu S, Liao K, Cai T. Automated Feature Selection of Predictors in Electronic Medical Records Data. Biometrics. PMID 30353541 DOI: 10.1111/Biom.12987  0.665
2018 Hong C, Liao KP, Cai T. Semi-supervised Validation of Multiple Surrogate Outcomes with Application to Electronic Medical Records Phenotyping. Biometrics. PMID 30267536 DOI: 10.1111/Biom.12971  0.382
2018 Maziarz M, Cai T, Qi L, Lok AS, Zheng Y. Evaluating longitudinal markers under two-phase study designs. Biostatistics (Oxford, England). PMID 29912281 DOI: 10.1093/Biostatistics/Kxy013  0.402
2018 Xia Y, Cai T, Cai TT. Multiple Testing of Submatrices of a Precision Matrix with Applications to Identification of Between Pathway Interactions. Journal of the American Statistical Association. 113: 328-339. PMID 29881130 DOI: 10.1080/01621459.2016.1251930  0.329
2018 Chen CY, Lee PH, Castro VM, Minnier J, Charney AW, Stahl EA, Ruderfer DM, Murphy SN, Gainer V, Cai T, Jones I, Pato CN, Pato MT, Landén M, Sklar P, et al. Genetic validation of bipolar disorder identified by automated phenotyping using electronic health records. Translational Psychiatry. 8: 86. PMID 29666432 DOI: 10.1038/S41398-018-0133-7  0.63
2018 Sinnott JA, Cai T. Pathway aggregation for survival prediction via multiple kernel learning. Statistics in Medicine. PMID 29664143 DOI: 10.1002/Sim.7681  0.696
2018 Xia Y, Cai T, Cai TT. Two-Sample Tests for High-Dimensional Linear Regression with an Application to Detecting Interactions. Statistica Sinica. 28: 63-92. PMID 29386856 DOI: 10.5705/Ss.202016.0032  0.357
2018 Chakrabortty A, Cai T. Efficient and adaptive linear regression in semi-supervised settings The Annals of Statistics. 46: 1541-1572. DOI: 10.1214/17-Aos1594  0.389
2018 Gamerman V, Cai T, Elsäßer A. Pragmatic randomized clinical trials: best practices and statistical guidance Health Services and Outcomes Research Methodology. 19: 23-35. DOI: 10.1007/S10742-018-0192-5  0.326
2017 Yu S, Ma Y, Gronsbell J, Cai T, Ananthakrishnan AN, Gainer VS, Churchill SE, Szolovits P, Murphy SN, Kohane IS, Liao KP, Cai T. Enabling phenotypic big data with PheNorm. Journal of the American Medical Informatics Association : Jamia. PMID 29126253 DOI: 10.1093/Jamia/Ocx111  0.315
2017 Zheng Y, Brown M, Lok A, Cai T. IMPROVING EFFICIENCY IN BIOMARKER INCREMENTAL VALUE EVALUATION UNDER TWO-PHASE DESIGNS. The Annals of Applied Statistics. 11: 638-654. PMID 28943991 DOI: 10.1214/16-Aoas997  0.355
2017 Agniel D, Cai T. Analysis of multiple diverse phenotypes via semiparametric canonical correlation analysis. Biometrics. PMID 28407213 DOI: 10.1111/Biom.12690  0.7
2017 Zheng Y, Cai T. Augmented estimation for t-year survival with censored regression models. Biometrics. PMID 28294286 DOI: 10.1111/Biom.12683  0.44
2017 Dai W, Yang M, Wang C, Cai T. Sequence robust association test for familial data. Biometrics. PMID 28273695 DOI: 10.1111/Biom.12643  0.36
2017 Chen S, Tian L, Cai T, Yu M. A general statistical framework for subgroup identification and comparative treatment scoring. Biometrics. PMID 28211943 DOI: 10.1111/Biom.12676  0.419
2017 Xie W, Agniel D, Shevchenko A, Malov SV, Svitin A, Cherkasov N, Baum MK, Campa A, Gaseitsiwe S, Bussmann H, Makhema J, Marlink RG, Novitsky V, Lee TH, Cai T, et al. Genome-Wide Analyses Reveal Gene Influence on HIV Disease Progression and HIV-1C Acquisition in Southern Africa. Aids Research and Human Retroviruses. PMID 28132517 DOI: 10.1089/Aid.2016.0017  0.622
2017 Parast L, Cai T, Tian L. Evaluating surrogate marker information using censored data. Statistics in Medicine. PMID 28088843 DOI: 10.1002/Sim.7220  0.676
2017 Gronsbell JL, Cai T. Semi-supervised approaches to efficient evaluation of model prediction performance Journal of the Royal Statistical Society: Series B (Statistical Methodology). 80: 579-594. DOI: 10.1111/Rssb.12264  0.431
2016 Yong FH, Tian L, Yu S, Cai T, Wei LJ. Optimal stratification in outcome prediction using baseline information. Biometrika. 103: 817-828. PMID 29422691 DOI: 10.1093/Biomet/Asw049  0.392
2016 Cai T, Cai TT, Zhang A. Structured Matrix Completion with Applications to Genomic Data Integration. Journal of the American Statistical Association. 111: 621-633. PMID 28042188 DOI: 10.1080/01621459.2015.1021005  0.326
2016 Wang X, Zhang Z, Morris N, Cai T, Lee S, Wang C, Yu TW, Walsh CA, Lin X. Rare variant association test in family-based sequencing studies. Briefings in Bioinformatics. PMID 27677958 DOI: 10.1093/Bib/Bbw083  0.338
2016 He Q, Cai T, Liu Y, Zhao N, Harmon QE, Almli LM, Binder EB, Engel SM, Ressler KJ, Conneely KN, Lin X, Wu MC. Prioritizing individual genetic variants after kernel machine testing using variable selection. Genetic Epidemiology. PMID 27488097 DOI: 10.1002/Gepi.21993  0.315
2016 Maziarz M, Heagerty P, Cai T, Zheng Y. On longitudinal prediction with time-to-event outcome: Comparison of modeling options. Biometrics. PMID 27438160 DOI: 10.1111/Biom.12562  0.402
2016 Sinnott JA, Cai T. Inference for survival prediction under the regularized Cox model. Biostatistics (Oxford, England). PMID 27107008 DOI: 10.1093/Biostatistics/Kxw016  0.694
2016 Payne R, Yang M, Zheng Y, Jensen MK, Cai T. Robust risk prediction with biomarkers under two-phase stratified cohort design. Biometrics. PMID 27037494 DOI: 10.1111/Biom.12515  0.428
2016 Shen Y, Cai T. Identifying predictive markers for personalized treatment selection. Biometrics. PMID 26999054 DOI: 10.1111/Biom.12511  0.391
2016 Agniel D, Liao KP, Cai T. Estimation and testing for multiple regulation of multivariate mixed outcomes. Biometrics. PMID 26910481 DOI: 10.1111/Biom.12495  0.687
2016 Ananthakrishnan AN, Cagan A, Cai T, Gainer VS, Shaw SY, Churchill S, Karlson EW, Murphy SN, Liao KP, Kohane I. Statin use is Associated With Reduced Risk of Colorectal Cancer in Patients with Inflammatory Bowel Diseases. Clinical Gastroenterology and Hepatology : the Official Clinical Practice Journal of the American Gastroenterological Association. PMID 26905907 DOI: 10.1016/J.Cgh.2016.02.017  0.343
2016 Huang YT, Cai T, Kim E. Integrative genomic testing of cancer survival using semiparametric linear transformation models. Statistics in Medicine. PMID 26887583 DOI: 10.1002/Sim.6900  0.336
2016 Kessler RC, van Loo HM, Wardenaar KJ, Bossarte RM, Brenner LA, Cai T, Ebert DD, Hwang I, Li J, de Jonge P, Nierenberg AA, Petukhova MV, Rosellini AJ, Sampson NA, Schoevers RA, et al. Testing a machine-learning algorithm to predict the persistence and severity of major depressive disorder from baseline self-reports. Molecular Psychiatry. PMID 26728563 DOI: 10.1038/Mp.2015.198  0.359
2015 Payne R, Neykov M, Jensen MK, Cai T. Kernel machine testing for risk prediction with stratified case cohort studies. Biometrics. PMID 26692376 DOI: 10.1111/Biom.12452  0.443
2015 Li J, Zhao L, Tian L, Cai T, Claggett B, Callegaro A, Dizier B, Spiessens B, Ulloa-Montoya F, Wei LJ. A predictive enrichment procedure to identify potential responders to a new therapy for randomized, comparative controlled clinical studies. Biometrics. PMID 26689167 DOI: 10.1111/Biom.12461  0.646
2015 Huang YT, Cai T. Mediation analysis for survival data using semiparametric probit models. Biometrics. PMID 26618735 DOI: 10.1111/Biom.12445  0.368
2015 Castro V, Shen Y, Yu S, Finan S, Pau CT, Gainer V, Keefe CC, Savova G, Murphy SN, Cai T, Welt CK. Identification of subjects with polycystic ovary syndrome using electronic health records. Reproductive Biology and Endocrinology : Rb&E. 13: 116. PMID 26510685 DOI: 10.1186/S12958-015-0115-Z  0.332
2015 Ananthakrishnan AN, Cagan A, Cai T, Gainer VS, Shaw SY, Savova G, Churchill S, Karlson EW, Murphy SN, Liao KP, Kohane I. Identification of Nonresponse to Treatment Using Narrative Data in an Electronic Health Record Inflammatory Bowel Disease Cohort. Inflammatory Bowel Diseases. PMID 26332313 DOI: 10.1097/Mib.0000000000000580  0.35
2015 Liao KP, Ananthakrishnan AN, Kumar V, Xia Z, Cagan A, Gainer VS, Goryachev S, Chen P, Savova GK, Agniel D, Churchill S, Lee J, Murphy SN, Plenge RM, Szolovits P, ... ... Cai T, et al. Methods to Develop an Electronic Medical Record Phenotype Algorithm to Compare the Risk of Coronary Artery Disease across 3 Chronic Disease Cohorts. Plos One. 10: e0136651. PMID 26301417 DOI: 10.1371/Journal.Pone.0136651  0.653
2015 Minnier J, Yuan M, Liu JS, Cai T. Risk Classification with an Adaptive Naive Bayes Kernel Machine Model. Journal of the American Statistical Association. 110: 393-404. PMID 26236061 DOI: 10.1080/01621459.2014.908778  0.689
2015 Zhou QM, Zheng Y, Chibnik LB, Karlson EW, Cai T. Assessing incremental value of biomarkers with multi-phase nested case-control studies. Biometrics. PMID 26195245 DOI: 10.1111/Biom.12344  0.387
2015 Shen Y, Cai T, Chen Y, Yang Y, Chen J. Retrospective likelihood-based methods for analyzing case-cohort genetic association studies. Biometrics. PMID 26177343 DOI: 10.1111/Biom.12342  0.414
2015 Uno H, Wittes J, Fu H, Solomon SD, Claggett B, Tian L, Cai T, Pfeffer MA, Evans SR, Wei LJ. Alternatives to Hazard Ratios for Comparing the Efficacy or Safety of Therapies in Noninferiority Studies. Annals of Internal Medicine. PMID 26054047 DOI: 10.7326/M14-1741  0.561
2015 Castro VM, Minnier J, Murphy SN, Kohane I, Churchill SE, Gainer V, Cai T, Hoffnagle AG, Dai Y, Block S, Weill SR, Nadal-Vicens M, Pollastri AR, Rosenquist JN, Goryachev S, et al. Validation of electronic health record phenotyping of bipolar disorder cases and controls. The American Journal of Psychiatry. 172: 363-72. PMID 25827034 DOI: 10.1176/Appi.Ajp.2014.14030423  0.599
2015 Shen Y, Liao KP, Cai T. Sparse kernel machine regression for ordinal outcomes. Biometrics. 71: 63-70. PMID 25196727 DOI: 10.1111/Biom.12223  0.405
2015 Ananthakrishnan AN, Cagan A, Cai T, Gainer VS, Shaw SY, Churchill S, Karlson EW, Murphy SN, Kohane I, Liao KP. Colonoscopy is associated with a reduced risk for colon cancer and mortality in patients with inflammatory bowel diseases. Clinical Gastroenterology and Hepatology : the Official Clinical Practice Journal of the American Gastroenterological Association. 13: 322-329.e1. PMID 25041865 DOI: 10.1016/J.Cgh.2014.07.018  0.302
2014 Sinnott JA, Dai W, Liao KP, Shaw SY, Ananthakrishnan AN, Gainer VS, Karlson EW, Churchill S, Szolovits P, Murphy S, Kohane I, Plenge R, Cai T. Improving the power of genetic association tests with imperfect phenotype derived from electronic medical records. Human Genetics. 133: 1369-82. PMID 25062868 DOI: 10.1007/S00439-014-1466-9  0.704
2014 Matsouaka RA, Li J, Cai T. Evaluating marker-guided treatment selection strategies. Biometrics. 70: 489-99. PMID 24779731 DOI: 10.1111/Biom.12179  0.425
2014 Parast L, Tian L, Cai T. Landmark Estimation of Survival and Treatment Effect in a Randomized Clinical Trial. Journal of the American Statistical Association. 109: 384-394. PMID 24659838 DOI: 10.1080/01621459.2013.842488  0.648
2014 Ananthakrishnan AN, Cheng SC, Cai T, Cagan A, Gainer VS, Szolovits P, Shaw SY, Churchill S, Karlson EW, Murphy SN, Kohane I, Liao KP. Serum inflammatory markers and risk of colorectal cancer in patients with inflammatory bowel diseases. Clinical Gastroenterology and Hepatology : the Official Clinical Practice Journal of the American Gastroenterological Association. 12: 1342-8.e1. PMID 24407106 DOI: 10.1016/J.Cgh.2013.12.030  0.32
2013 Cai T, Zheng Y. Resampling Procedures for Making Inference under Nested Case-control Studies. Journal of the American Statistical Association. 108: 1532-1544. PMID 24436503 DOI: 10.1080/01621459.2013.856715  0.419
2013 Sinnott JA, Cai T. Omnibus risk assessment via accelerated failure time kernel machine modeling. Biometrics. 69: 861-73. PMID 24328713 DOI: 10.1111/Biom.12098  0.721
2013 Xia Z, Secor E, Chibnik LB, Bove RM, Cheng S, Chitnis T, Cagan A, Gainer VS, Chen PJ, Liao KP, Shaw SY, Ananthakrishnan AN, Szolovits P, Weiner HL, Karlson EW, ... ... Cai T, et al. Modeling disease severity in multiple sclerosis using electronic health records. Plos One. 8: e78927. PMID 24244385 DOI: 10.1371/Journal.Pone.0078927  0.314
2013 Zhao L, Tian L, Cai T, Claggett B, Wei LJ. EFFECTIVELY SELECTING A TARGET POPULATION FOR A FUTURE COMPARATIVE STUDY. Journal of the American Statistical Association. 108: 527-539. PMID 24058223 DOI: 10.1080/01621459.2013.770705  0.641
2013 Zhou QM, Zheng Y, Cai T. Assessment of biomarkers for risk prediction with nested case-control studies. Clinical Trials (London, England). 10: 677-9. PMID 24013405 DOI: 10.1177/1740774513498321  0.4
2013 Cai T, Tian L, Lloyd-Jones D, Wei LJ. Evaluating subject-level incremental values of new markers for risk classification rule. Lifetime Data Analysis. 19: 547-67. PMID 23807696 DOI: 10.1007/S10985-013-9272-6  0.531
2013 Zheng Y, Cai T, Pepe MS. Adopting nested case-control quota sampling designs for the evaluation of risk markers. Lifetime Data Analysis. 19: 568-88. PMID 23807695 DOI: 10.1007/S10985-013-9270-8  0.397
2013 Ananthakrishnan AN, Cai T, Savova G, Cheng SC, Chen P, Perez RG, Gainer VS, Murphy SN, Szolovits P, Xia Z, Shaw S, Churchill S, Karlson EW, Kohane I, Plenge RM, et al. Improving case definition of Crohn's disease and ulcerative colitis in electronic medical records using natural language processing: a novel informatics approach. Inflammatory Bowel Diseases. 19: 1411-20. PMID 23567779 DOI: 10.1097/Mib.0B013E31828133Fd  0.32
2013 Parast L, Cai T. Landmark risk prediction of residual life for breast cancer survival. Statistics in Medicine. 32: 3459-71. PMID 23494768 DOI: 10.1002/Sim.5776  0.659
2013 Zhou QM, Zheng Y, Cai T. Subgroup specific incremental value of new markers for risk prediction. Lifetime Data Analysis. 19: 142-69. PMID 23263882 DOI: 10.1007/S10985-012-9235-3  0.433
2013 Zheng Y, Parast L, Cai T, Brown M. Evaluating incremental values from new predictors with net reclassification improvement in survival analysis. Lifetime Data Analysis. 19: 350-70. PMID 23254468 DOI: 10.1007/S10985-012-9239-Z  0.666
2013 Uno H, Tian L, Cai T, Kohane IS, Wei LJ. A unified inference procedure for a class of measures to assess improvement in risk prediction systems with survival data. Statistics in Medicine. 32: 2430-42. PMID 23037800 DOI: 10.1002/Sim.5647  0.57
2012 León LF, Cai T. Model Checking Techniques for Assessing Functional Form Specifications in Censored Linear Regression Models. Statistica Sinica. 22: 509-530. PMID 23825917 DOI: 10.5705/Ss.2010.109  0.695
2012 Parast L, Cheng SC, Cai T. Landmark Prediction of Long Term Survival Incorporating Short Term Event Time Information. Journal of the American Statistical Association. 107: 1492-1501. PMID 23293405 DOI: 10.1080/01621459.2012.721281  0.655
2012 Liu D, Cai T, Zheng Y. Evaluating the predictive value of biomarkers with stratified case-cohort design. Biometrics. 68: 1219-27. PMID 23173848 DOI: 10.1111/J.1541-0420.2012.01787.X  0.429
2012 Cai T, Lin X, Carroll RJ. Identifying genetic marker sets associated with phenotypes via an efficient adaptive score test Biostatistics. 13: 776-790. PMID 22734045 DOI: 10.1093/Biostatistics/Kxs015  0.401
2012 Lu MT, Demehri S, Cai T, Parast L, Hunsaker AR, Goldhaber SZ, Rybicki FJ. Axial and reformatted four-chamber right ventricle-to-left ventricle diameter ratios on pulmonary CT angiography as predictors of death after acute pulmonary embolism. Ajr. American Journal of Roentgenology. 198: 1353-60. PMID 22623548 DOI: 10.2214/Ajr.11.7439  0.574
2012 Ananthakrishnan AN, Guzman-Perez R, Gainer V, Cai T, Churchill S, Kohane I, Plenge RM, Murphy S. Predictors of severe outcomes associated with Clostridium difficile infection in patients with inflammatory bowel disease Alimentary Pharmacology & Therapeutics. 35: 789-795. PMID 22360370 DOI: 10.1111/J.1365-2036.2012.05022.X  0.329
2012 Tian L, Cai T, Zhao L, Wei LJ. On the covariate-adjusted estimation for an overall treatment difference with data from a randomized comparative clinical trial. Biostatistics (Oxford, England). 13: 256-73. PMID 22294672 DOI: 10.1093/Biostatistics/Kxr050  0.578
2012 Zheng Y, Cai T, Jin Y, Feng Z. Evaluating prognostic accuracy of biomarkers under competing risk. Biometrics. 68: 388-96. PMID 22150576 DOI: 10.1111/J.1541-0420.2011.01671.X  0.427
2012 Cai T, Zheng Y. Evaluating prognostic accuracy of biomarkers in nested case-control studies. Biostatistics (Oxford, England). 13: 89-100. PMID 21856652 DOI: 10.1093/Biostatistics/Kxr021  0.391
2012 Perlis RH, Iosifescu DV, Castro VM, Murphy SN, Gainer VS, Minnier J, Cai T, Goryachev S, Zeng Q, Gallagher PJ, Fava M, Weilburg JB, Churchill SE, Kohane IS, Smoller JW. Using electronic medical records to enable large-scale studies in psychiatry: treatment resistant depression as a model. Psychological Medicine. 42: 41-50. PMID 21682950 DOI: 10.1017/S0033291711000997  0.661
2012 Xue L, Zou H, Cai T. Nonconcave penalized composite conditional likelihood estimation of sparse Ising models The Annals of Statistics. 40: 1403-1429. DOI: 10.1214/12-Aos1017  0.387
2011 Minnier J, Tian L, Cai T. A Perturbation Method for Inference on Regularized Regression Estimates. Journal of the American Statistical Association. 106: 1371-1382. PMID 22844171 DOI: 10.1198/Jasa.2011.Tm10382  0.676
2011 Cai T, Zheng Y. Non-parametric Evaluation of Biomarker Accuracy under Nested Case-control Studies. Journal of the American Statistical Association. 106: 569-580. PMID 22844169 DOI: 10.1198/Jasa.2011.Tm09807  0.42
2011 Qi L, Parast L, Cai T, Powers C, Gervino EV, Hauser TH, Hu FB, Doria A. Genetic susceptibility to coronary heart disease in type 2 diabetes: 3 independent studies. Journal of the American College of Cardiology. 58: 2675-82. PMID 22152955 DOI: 10.1016/J.Jacc.2011.08.054  0.608
2011 Lin X, Cai T, Wu MC, Zhou Q, Liu G, Christiani DC, Lin X. Kernel machine SNP-set analysis for censored survival outcomes in genome-wide association studies. Genetic Epidemiology. 35: 620-31. PMID 21818772 DOI: 10.1002/Gepi.20610  0.312
2011 Wu MC, Lee S, Cai T, Li Y, Boehnke M, Lin X. Rare-variant association testing for sequencing data with the sequence kernel association test. American Journal of Human Genetics. 89: 82-93. PMID 21737059 DOI: 10.1016/J.Ajhg.2011.05.029  0.317
2011 Uno H, Cai T, Tian L, Wei LJ. Graphical procedures for evaluating overall and subject-specific incremental values from new predictors with censored event time data. Biometrics. 67: 1389-96. PMID 21504421 DOI: 10.1111/J.1541-0420.2011.01600.X  0.566
2011 Uno H, Cai T, Pencina MJ, D'Agostino RB, Wei LJ. On the C-statistics for evaluating overall adequacy of risk prediction procedures with censored survival data. Statistics in Medicine. 30: 1105-17. PMID 21484848 DOI: 10.1002/Sim.4154  0.588
2011 Cai T, Tian L, Lloyd-Jones DM. Comparing costs associated with risk stratification rules for t-year survival. Biostatistics (Oxford, England). 12: 597-609. PMID 21415016 DOI: 10.1093/Biostatistics/Kxr001  0.342
2011 Parast L, Cheng SC, Cai T. Incorporating short-term outcome information to predict long-term survival with discrete markers. Biometrical Journal. Biometrische Zeitschrift. 53: 294-307. PMID 21337601 DOI: 10.1002/Bimj.201000150  0.663
2011 Cai T, Tonini G, Lin X. Kernel machine approach to testing the significance of multiple genetic markers for risk prediction. Biometrics. 67: 975-86. PMID 21281275 DOI: 10.1111/J.1541-0420.2010.01544.X  0.427
2011 Kurreeman F, Liao K, Chibnik L, Hickey B, Stahl E, Gainer V, Li G, Bry L, Mahan S, Ardlie K, Thomson B, Szolovits P, Churchill S, Murphy SN, Cai T, et al. Genetic basis of autoantibody positive and negative rheumatoid arthritis risk in a multi-ethnic cohort derived from electronic health records. American Journal of Human Genetics. 88: 57-69. PMID 21211616 DOI: 10.1016/J.Ajhg.2010.12.007  0.322
2011 Cai T, Tian L, Wong PH, Wei LJ. Analysis of randomized comparative clinical trial data for personalized treatment selections. Biostatistics (Oxford, England). 12: 270-82. PMID 20876663 DOI: 10.1093/Biostatistics/Kxq060  0.561
2011 Tian L, Wang R, Cai T, Wei LJ. The highest confidence density region and its usage for joint inferences about constrained parameters. Biometrics. 67: 604-10. PMID 20825392 DOI: 10.1111/J.1541-0420.2010.01486.X  0.508
2011 Love TJ, Cai T, Karlson EW. Validation of psoriatic arthritis diagnoses in electronic medical records using natural language processing. Seminars in Arthritis and Rheumatism. 40: 413-20. PMID 20701955 DOI: 10.1016/J.Semarthrit.2010.05.002  0.314
2011 Cai T, Gerds TA, Zheng Y, Chen J. Robust prediction of t-year survival with data from multiple studies. Biometrics. 67: 436-44. PMID 20670303 DOI: 10.1111/J.1541-0420.2010.01462.X  0.393
2010 Wang R, Tian L, Cai T, Wei LJ. NONPARAMETRIC INFERENCE PROCEDURE FOR PERCENTILES OF THE RANDOM EFFECTS DISTRIBUTION IN META-ANALYSIS. The Annals of Applied Statistics. 4: 520-532. PMID 25678939 DOI: 10.1214/09-Aoas280  0.368
2010 McDaniel S, Minnier J, Betensky RA, Mohapatra G, Shen Y, Gusella JF, Louis DN, Cai T. Assessing Population Level Genetic Instability via Moving Average. Statistics in Biosciences. 2: 120-136. PMID 22866169 DOI: 10.1007/S12561-010-9028-8  0.747
2010 Cai T, Parast L, Ryan L. Meta-analysis for rare events. Statistics in Medicine. 29: 2078-89. PMID 20623822 DOI: 10.1002/Sim.3964  0.67
2010 Zheng Y, Cai T, Stanford JL, Feng Z. Semiparametric models of time-dependent predictive values of prognostic biomarkers. Biometrics. 66: 50-60. PMID 19397579 DOI: 10.1111/J.1541-0420.2009.01246.X  0.395
2010 Wang R, Tian L, Cai T, Wei LJ. Nonparametric inference procedure for percentiles of the random effects distribution in meta-analysis The Annals of Applied Statistics. 4: 520-532. DOI: 10.1214/09-AOAS280  0.433
2009 Tian L, Cai T, Pfeffer MA, Piankov N, Cremieux PY, Wei LJ. Exact and efficient inference procedure for meta-analysis and its application to the analysis of independent 2 x 2 tables with all available data but without artificial continuity correction. Biostatistics (Oxford, England). 10: 275-81. PMID 18922759 DOI: 10.1093/Biostatistics/Kxn034  0.544
2009 Cai T, Huang J, Tian L. Regularized estimation for the accelerated failure time model. Biometrics. 65: 394-404. PMID 18573133 DOI: 10.1111/J.1541-0420.2008.01074.X  0.432
2009 León LF, Cai T, Wei LJ. Robust Inferences for Covariate Effects on Survival Time with Censored Linear Regression Models Statistics in Biosciences. 1: 50-64. DOI: 10.1007/S12561-009-9002-5  0.698
2008 Zheng Y, Cai T, Pepe MS, Levy WC. Time-dependent Predictive Values of Prognostic Biomarkers with Failure Time Outcome. Journal of the American Statistical Association. 103: 362-368. PMID 19655041 DOI: 10.1198/016214507000001481  0.401
2008 Tian L, Cai T, Wei LJ. Identifying subjects who benefit from additional information for better prediction of the outcome variables. Biometrics. 65: 894-902. PMID 18945268 DOI: 10.1111/J.1541-0420.2008.01125.X  0.566
2008 Gerds TA, Cai T, Schumacher M. The performance of risk prediction models. Biometrical Journal. Biometrische Zeitschrift. 50: 457-79. PMID 18663757 DOI: 10.1002/Bimj.200810443  0.379
2008 Cai T, Cheng S. Robust combination of multiple diagnostic tests for classifying censored event times Biostatistics. 9: 216-233. PMID 18056687 DOI: 10.1093/Biostatistics/Kxm037  0.416
2008 Cai T, Tian L, Solomon SD, Wei L. Predicting future responses based on possibly mis-specified working models Biometrika. 95: 75-92. DOI: 10.1093/Biomet/Asm078  0.375
2007 Cai T, Zheng Y. Model checking for ROC regression analysis. Biometrics. 63: 152-63. PMID 17447940 DOI: 10.1111/J.1541-0420.2006.00620.X  0.377
2007 Uno H, Cai T, Tian L, Wei LJ. Evaluating Prediction Rules fort-Year Survivors With Censored Regression Models Journal of the American Statistical Association. 102: 527-537. DOI: 10.1198/016214507000000149  0.398
2007 Tian L, Cai T, Goetghebeur E, Wei LJ. Model evaluation based on the sampling distribution of estimated absolute prediction error Biometrika. 94: 297-311. DOI: 10.1093/Biomet/Asm036  0.346
2006 Cai T, Gilbert PB, Self SG. Joint inferences on vaccine efficacy against infection and disease with application to the first HIV vaccine efficacy trial Journal of Biopharmaceutical Statistics. 16: 517-538. PMID 16892911 DOI: 10.1080/10543400600719483  0.343
2006 Zheng Y, Cai T, Feng Z. Application of the time-dependent ROC curves for prognostic accuracy with multiple biomarkers. Biometrics. 62: 279-87. PMID 16542256 DOI: 10.1111/J.1541-0420.2005.00441.X  0.423
2006 Pepe MS, Cai T, Longton G. Combining predictors for classification using the area under the receiver operating characteristic curve. Biometrics. 62: 221-9. PMID 16542249 DOI: 10.1111/J.1541-0420.2005.00420.X  0.399
2006 Cai T, Pepe MS, Zheng Y, Lumley T, Jenny NS. The sensitivity and specificity of markers for event times. Biostatistics (Oxford, England). 7: 182-97. PMID 16079162 DOI: 10.1093/Biostatistics/Kxi047  0.415
2006 Tian L, Cai T. On the accelerated failure time model for current status and interval censored data Biometrika. 93: 329-342. DOI: 10.1093/Biomet/93.2.329  0.397
2005 Chuang SK, Cai T, Douglass CW, Wei LJ, Dodson TB. Frailty approach for the analysis of clustered failure time observations in dental research. Journal of Dental Research. 84: 54-8. PMID 15615876 DOI: 10.1177/154405910508400109  0.468
2005 Cai T, Tian L, Wei LJ. Semiparametric Box–Cox power transformation models for censored survival observations Biometrika. 92: 619-632. DOI: 10.1093/Biomet/92.3.619  0.352
2004 Cai T, Moskowitz CS. Semi-parametric estimation of the binormal ROC curve for a continuous diagnostic test. Biostatistics (Oxford, England). 5: 573-86. PMID 15475420 DOI: 10.1093/Biostatistics/Kxh009  0.36
2004 Pepe MS, Cai T. The analysis of placement values for evaluating discriminatory measures Biometrics. 60: 528-535. PMID 15180681 DOI: 10.1111/J.0006-341X.2004.00200.X  0.359
2004 Cai T. Semi-parametric ROC regression analysis with placement values Biostatistics. 5: 45-60. PMID 14744827 DOI: 10.1093/Biostatistics/5.1.45  0.399
2004 Cai T, Cheng S. Semiparametric regression analysis for doubly censored data Biometrika. 91: 277-290. DOI: 10.1093/Biomet/91.2.277  0.376
2003 Cai T, Betensky RA. Hazard regression for interval-censored data with penalized spline Biometrics. 59: 570-579. PMID 14601758 DOI: 10.1111/1541-0420.00067  0.384
2002 Cai T, Hyndman RJ, Wand MP. Mixed Model-Based Hazard Estimation Journal of Computational and Graphical Statistics. 11: 784-798. DOI: 10.1198/106186002862  0.374
2002 Cai T, Cheng SC, Wei LJ. Semiparametric Mixed-Effects Models for Clustered Failure Time Data Journal of the American Statistical Association. 97: 514-522. DOI: 10.1198/016214502760047041  0.368
2002 Cai T, Pepe MS. Semiparametric receiver operating characteristic analysis to evaluate biomarkers for disease Journal of the American Statistical Association. 97: 1099-1107. DOI: 10.1198/016214502388618915  0.374
2000 Cai T. Semiparametric regression analysis for clustered failure time data Biometrika. 87: 867-878. DOI: 10.1093/Biomet/87.4.867  0.38
1999 Rogus JJ, Cai T, Wei L. Issues in genomic screening: critical values, sample sizes, and the ability to detect linkage. Genetic Epidemiology. 17. PMID 10597516 DOI: 10.1002/Gepi.13701707114  0.511
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