| Year |
Citation |
Score |
| 2019 |
Watts JA, Burdick J, Daigneault J, Zhu Z, Grunseich C, Bruzel A, Cheung VG. cis Elements that Mediate RNA Polymerase II Pausing Regulate Human Gene Expression. American Journal of Human Genetics. PMID 31495490 DOI: 10.1016/J.Ajhg.2019.08.003 |
0.425 |
|
| 2018 |
Grunseich C, Wang IX, Watts JA, Burdick JT, Guber RD, Zhu Z, Bruzel A, Lanman T, Chen K, Schindler AB, Edwards N, Ray-Chaudhury A, Yao J, Lehky T, Piszczek G, ... ... Cheung VG, et al. Senataxin Mutation Reveals How R-Loops Promote Transcription by Blocking DNA Methylation at Gene Promoters. Molecular Cell. 69: 426-437.e7. PMID 29395064 DOI: 10.1016/J.Molcel.2017.12.030 |
0.335 |
|
| 2016 |
Begum F, Chowdhury R, Cheung V, Sherman S, Feingold E. Genome-Wide Association Study of Meiotic Recombination Phenotypes. G3 (Bethesda, Md.). PMID 27733454 DOI: 10.1534/G3.116.035766 |
0.46 |
|
| 2016 |
Cheung VG, Wang IX, Grunseich C, Chang YG, Ramrattan G, Zhang Z, Kwak H. RNA-DNA sequence differences in Saccharomyces cerevisiae. Genome Research. PMID 27638543 DOI: 10.1101/Gr.207878.116 |
0.32 |
|
| 2016 |
Booth GT, Wang IX, Cheung VG, Lis JT. Corrigendum: Divergence of a conserved elongation factor and transcription regulation in budding and fission yeast. Genome Research. 26: 1010-1. PMID 27371223 DOI: 10.1101/Gr.210161.116 |
0.308 |
|
| 2016 |
Booth GT, Wang IX, Cheung VG, Lis JT. Divergence of a conserved elongation factor and transcription regulation in budding and fission yeast. Genome Research. PMID 27197211 DOI: 10.1101/Gr.204578.116 |
0.385 |
|
| 2016 |
Razavian N, Cheung V. SRSF1 Is a Mediator of Radiation-Induced Alternative Splicing in B-Lymphocytes Blood. 128: 1341-1341. DOI: 10.1182/Blood.V128.22.1341.1341 |
0.388 |
|
| 2015 |
Wang IX, Ramrattan G, Cheung VG. Genetic variation in insulin-induced kinase signaling. Molecular Systems Biology. 11: 820. PMID 26202599 DOI: 10.15252/Msb.20156250 |
0.341 |
|
| 2015 |
Danko CG, Hyland SL, Core LJ, Martins AL, Waters CT, Lee HW, Cheung VG, Kraus WL, Lis JT, Siepel A. Identification of active transcriptional regulatory elements from GRO-seq data. Nature Methods. 12: 433-8. PMID 25799441 DOI: 10.1038/Nmeth.3329 |
0.386 |
|
| 2014 |
Oliver TR, Middlebrooks CD, Tinker SW, Allen EG, Bean LJ, Begum F, Feingold E, Chowdhury R, Cheung V, Sherman SL. An examination of the relationship between hotspots and recombination associated with chromosome 21 nondisjunction. Plos One. 9: e99560. PMID 24926858 DOI: 10.1371/Journal.Pone.0099560 |
0.354 |
|
| 2014 |
Gregory BL, Cheung VG. Natural variation in the histone demethylase, KDM4C, influences expression levels of specific genes including those that affect cell growth. Genome Research. 24: 52-63. PMID 24285722 DOI: 10.1101/Gr.156141.113 |
0.73 |
|
| 2014 |
Nayak RR, Bernal WE, Lee JW, Kearns MJ, Cheung VG. Stress-induced changes in gene interactions in human cells. Nucleic Acids Research. 42: 1757-71. PMID 24170811 DOI: 10.1093/Nar/Gkt999 |
0.634 |
|
| 2014 |
Middlebrooks CD, Mukhopadhyay N, Tinker SW, Allen EG, Bean LJ, Begum F, Chowdhury R, Cheung V, Doheny K, Adams M, Feingold E, Sherman SL. Evidence for dysregulation of genome-wide recombination in oocytes with nondisjoined chromosomes 21. Human Molecular Genetics. 23: 408-17. PMID 24014426 DOI: 10.1093/Hmg/Ddt433 |
0.308 |
|
| 2013 |
Wang IX, So E, Devlin JL, Zhao Y, Wu M, Cheung VG. ADAR regulates RNA editing, transcript stability, and gene expression. Cell Reports. 5: 849-60. PMID 24183664 DOI: 10.1016/J.Celrep.2013.10.002 |
0.428 |
|
| 2012 |
Wilson Sayres MA, Brookes AJ, Chanock SJ, Cheung VG, Goldstein DB, Jin L, Kwok PY. HGV2011: personalized genomic medicine meets the incidentalome. Human Mutation. 33: 582-5. PMID 22170622 DOI: 10.1002/Humu.22008 |
0.323 |
|
| 2012 |
Smirnov DA, Brady L, Halasa K, Morley M, Solomon S, Cheung VG. Genetic variation in radiation-induced cell death. Genome Research. 22: 332-9. PMID 21844125 DOI: 10.1101/Gr.122044.111 |
0.437 |
|
| 2012 |
Li M, Wang IX, Cheung VG. Response to comments on "Widespread RNA and DNA sequence differences in the human transcriptome" Science. 335: 1302-f. DOI: 10.1126/Science.1210419 |
0.327 |
|
| 2011 |
Page D, Cheung V, Haussler D, Gibbs R. Human genome: What's been most surprising? Cell. 147: 9-10. PMID 22128372 DOI: 10.1016/J.Cell.2011.09.006 |
0.308 |
|
| 2011 |
Li M, Wang IX, Li Y, Bruzel A, Richards AL, Toung JM, Cheung VG. Widespread RNA and DNA sequence differences in the human transcriptome. Science (New York, N.Y.). 333: 53-8. PMID 21596952 DOI: 10.1126/Science.1207018 |
0.326 |
|
| 2011 |
Toung JM, Morley M, Li M, Cheung VG. RNA-sequence analysis of human B-cells. Genome Research. 21: 991-8. PMID 21536721 DOI: 10.1101/Gr.116335.110 |
0.53 |
|
| 2010 |
Cheung VG, Nayak RR, Wang IX, Elwyn S, Cousins SM, Morley M, Spielman RS. Polymorphic cis- and trans-regulation of human gene expression. Plos Biology. 8. PMID 20856902 DOI: 10.1371/Journal.Pbio.1000480 |
0.673 |
|
| 2010 |
Dombroski BA, Nayak RR, Ewens KG, Ankener W, Cheung VG, Spielman RS. Gene expression and genetic variation in response to endoplasmic reticulum stress in human cells. American Journal of Human Genetics. 86: 719-29. PMID 20398888 DOI: 10.1016/J.Ajhg.2010.03.017 |
0.606 |
|
| 2009 |
Nayak RR, Kearns M, Spielman RS, Cheung VG. Coexpression network based on natural variation in human gene expression reveals gene interactions and functions. Genome Research. 19: 1953-62. PMID 19797678 DOI: 10.1101/Gr.097600.109 |
0.631 |
|
| 2009 |
Chowdhury R, Bois PR, Feingold E, Sherman SL, Cheung VG. Genetic analysis of variation in human meiotic recombination. Plos Genetics. 5: e1000648. PMID 19763160 DOI: 10.1371/Journal.Pgen.1000648 |
0.427 |
|
| 2009 |
Cheung VG, Spielman RS. Genetics of human gene expression: mapping DNA variants that influence gene expression. Nature Reviews. Genetics. 10: 595-604. PMID 19636342 DOI: 10.1038/Nrg2630 |
0.572 |
|
| 2009 |
Smirnov DA, Morley M, Shin E, Spielman RS, Cheung VG. Genetic analysis of radiation-induced changes in human gene expression. Nature. 459: 587-91. PMID 19349959 DOI: 10.1038/Nature07940 |
0.503 |
|
| 2008 |
Price AL, Patterson N, Hancks DC, Myers S, Reich D, Cheung VG, Spielman RS. Effects of cis and trans genetic ancestry on gene expression in African Americans. Plos Genetics. 4: e1000294. PMID 19057673 DOI: 10.1371/Journal.Pgen.1000294 |
0.53 |
|
| 2008 |
Smirnov DA, Cheung VG. ATM gene mutations result in both recessive and dominant expression phenotypes of genes and microRNAs. American Journal of Human Genetics. 83: 243-53. PMID 18674748 DOI: 10.1016/J.Ajhg.2008.07.003 |
0.421 |
|
| 2008 |
Cheung VG, Bruzel A, Burdick JT, Morley M, Devlin JL, Spielman RS. Monozygotic twins reveal germline contribution to allelic expression differences. American Journal of Human Genetics. 82: 1357-60. PMID 18513681 DOI: 10.1016/J.Ajhg.2008.05.003 |
0.488 |
|
| 2008 |
Smirnov DA, Cheung VG. ATM Gene Mutations Result in Both Recessive and Dominant Expression Phenotypes of Genes and MicroRNAs (DOI:10.1016/j.ajhg.2008.07.003) American Journal of Human Genetics. 83: 657. DOI: 10.1016/J.Ajhg.2008.10.013 |
0.354 |
|
| 2008 |
Smirnov D, Cheung VG. Disruption of a transcriptional regulatory pathway contributes to phenotypes in carriers of ataxia telangiectasia Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4955: 410. DOI: 10.1007/978-3-540-78839-3_34 |
0.422 |
|
| 2007 |
Bastone LA, Putt ME, Ten Have TR, Cheung VG, Spielman RS. Genetic heterogeneity and trans regulators of gene expression. Bmc Proceedings. 1: S80. PMID 18466583 DOI: 10.1186/1753-6561-1-S1-S80 |
0.453 |
|
| 2007 |
Cheung VG, Spielman RS. Data for Genetic Analysis Workshop (GAW) 15, Problem 1: genetics of gene expression variation in humans. Bmc Proceedings. 1: S2. PMID 18466516 DOI: 10.1186/1753-6561-1-S1-S2 |
0.481 |
|
| 2007 |
Wang X, Tomso DJ, Chorley BN, Cho HY, Cheung VG, Kleeberger SR, Bell DA. Identification of polymorphic antioxidant response elements in the human genome. Human Molecular Genetics. 16: 1188-200. PMID 17409198 DOI: 10.1093/Hmg/Ddm066 |
0.464 |
|
| 2007 |
Cheung VG, Burdick JT, Hirschmann D, Morley M. Polymorphic variation in human meiotic recombination. American Journal of Human Genetics. 80: 526-30. PMID 17273974 DOI: 10.1086/512131 |
0.35 |
|
| 2007 |
Spielman RS, Bastone LA, Burdick JT, Morley M, Ewens WJ, Cheung VG. Common genetic variants account for differences in gene expression among ethnic groups. Nature Genetics. 39: 226-31. PMID 17206142 DOI: 10.1038/Ng1955 |
0.485 |
|
| 2007 |
Spielman RS, Cheung VG. Reply to "On the design and analysis of gene expression studies in human populations" [2] Nature Genetics. 39: 808-809. DOI: 10.1038/Ng0707-808 |
0.42 |
|
| 2006 |
Burdick JT, Chen WM, Abecasis GR, Cheung VG. In silico method for inferring genotypes in pedigrees. Nature Genetics. 38: 1002-4. PMID 16921375 DOI: 10.1038/Ng1863 |
0.305 |
|
| 2006 |
Cheung VG, Ewens WJ. Heterozygous carriers of Nijmegen Breakage Syndrome have a distinct gene expression phenotype. Genome Research. 16: 973-9. PMID 16809669 DOI: 10.1101/Gr.5320706 |
0.467 |
|
| 2005 |
Cheung VG, Spielman RS, Ewens KG, Weber TM, Morley M, Burdick JT. Mapping determinants of human gene expression by regional and genome-wide association. Nature. 437: 1365-9. PMID 16251966 DOI: 10.1038/Nature04244 |
0.461 |
|
| 2005 |
Jen KY, Cheung VG. Identification of novel p53 target genes in ionizing radiation response. Cancer Research. 65: 7666-73. PMID 16140933 DOI: 10.1158/0008-5472.CAN-05-1039 |
0.587 |
|
| 2005 |
Cheung VG. Polymorphic landscape of the human genome. European Journal of Human Genetics : Ejhg. 13: 133-5. PMID 15536477 DOI: 10.1038/Sj.Ejhg.5201331 |
0.339 |
|
| 2005 |
Nguyen MT, Cheung VG, Morley M, Wagner K, Delaney DP, Zderic SA, Kolon TF. 699: Fertility Potential in the Cryptorchid Male Using Spermatozoal Gene Expression Micro Array Analysis Journal of Urology. 173: 191-191. DOI: 10.1016/S0022-5347(18)35931-7 |
0.407 |
|
| 2004 |
Correa CR, Cheung VG. Genetic variation in radiation-induced expression phenotypes. American Journal of Human Genetics. 75: 885-90. PMID 15359380 DOI: 10.1086/425221 |
0.482 |
|
| 2004 |
Morley M, Molony CM, Weber TM, Devlin JL, Ewens KG, Spielman RS, Cheung VG. Genetic analysis of genome-wide variation in human gene expression. Nature. 430: 743-7. PMID 15269782 DOI: 10.1038/Nature02797 |
0.562 |
|
| 2004 |
Smirnov DA, Burdick JT, Morley M, Cheung VG. Method for manufacturing whole-genome microarrays by rolling circle amplification. Genes, Chromosomes & Cancer. 40: 72-7. PMID 15034872 DOI: 10.1002/Gcc.20015 |
0.355 |
|
| 2004 |
Smirnov D, Bruzel A, Morley M, Cheung VG. Direct IBD mapping: identical-by-descent mapping without genotyping. Genomics. 83: 335-45. PMID 14706463 DOI: 10.1016/J.Ygeno.2003.08.002 |
0.335 |
|
| 2003 |
Cheung VG, Jen KY, Weber T, Morley M, Devlin JL, Ewens KG, Spielman RS. Genetics of quantitative variation in human gene expression. Cold Spring Harbor Symposia On Quantitative Biology. 68: 403-7. PMID 15338642 DOI: 10.1101/Sqb.2003.68.403 |
0.674 |
|
| 2003 |
Jen KY, Cheung VG. Transcriptional response of lymphoblastoid cells to ionizing radiation. Genome Research. 13: 2092-100. PMID 12915489 DOI: 10.1101/Gr.1240103 |
0.648 |
|
| 2003 |
Cheung VG, Conlin LK, Weber TM, Arcaro M, Jen KY, Morley M, Spielman RS. Natural variation in human gene expression assessed in lymphoblastoid cells. Nature Genetics. 33: 422-5. PMID 12567189 DOI: 10.1038/Ng1094 |
0.694 |
|
| 2002 |
Cheung VG, Spielman RS. The genetics of variation in gene expression. Nature Genetics. 32: 522-5. PMID 12454648 DOI: 10.1038/Ng1036 |
0.521 |
|
| 2002 |
Cheung VG, Spielman RS. Bridging genetics and genomics in neurology. Neurologic Clinics. 20: 867-77, viii. PMID 12432833 DOI: 10.1016/S0733-8619(02)00003-8 |
0.393 |
|
| 2002 |
Watts JA, Morley M, Burdick JT, Fiori JL, Ewens WJ, Spielman RS, Cheung VG. Gene expression phenotype in heterozygous carriers of ataxia telangiectasia. American Journal of Human Genetics. 71: 791-800. PMID 12226795 DOI: 10.1086/342974 |
0.44 |
|
| 2001 |
Cheung VG, Nowak N, Jang W, Kirsch IR, Zhao S, Chen XN, Furey TS, Kim UJ, Kuo WL, Olivier M, Conroy J, Kasprzyk A, Massa H, Yonescu R, Sait S, et al. Integration of cytogenetic landmarks into the draft sequence of the human genome. Nature. 409: 953-8. PMID 11237021 DOI: 10.1038/35057192 |
0.374 |
|
| 2001 |
McPherson JD, Marra M, Hillier L, Waterston RH, Chinwalla A, Wallis J, Sekhon M, Wylie K, Mardis ER, Wilson RK, Fulton R, Kucaba TA, Wagner-McPherson C, Barbazuk WB, Gregory SG, ... ... Cheung VG, et al. A physical map of the human genome. Nature. 409: 934-41. PMID 11237014 DOI: 10.1038/35057157 |
0.325 |
|
| 2001 |
Morley M, Arcaro M, Burdick J, Yonescu R, Reid T, Kirsch IR, Cheung VG. GenMapDB: a database of mapped human BAC clones. Nucleic Acids Research. 29: 144-7. PMID 11125073 DOI: 10.1093/Nar/29.1.144 |
0.339 |
|
| 1999 |
Grant GR, Manduchi E, Cheung VG, Ewens WJ. Significance testing for direct identity-by-descent mapping Annals of Human Genetics. 63: 441-454. PMID 10735585 DOI: 10.1046/J.1469-1809.1999.6350441.X |
0.456 |
|
| 1999 |
Cheung VG, Dalrymple HL, Narasimhan S, Watts J, Schuler G, Raap AK, Morley M, Bruzel A. A resource of mapped human bacterial artificial chromosome clones. Genome Research. 9: 989-93. PMID 10523527 DOI: 10.1101/Gr.9.10.989 |
0.365 |
|
| 1999 |
Livesey F, Gustincich S, Steffen M, Cheung V, Raviola E, Church G, Cepko C. Clustering cell types and identifying cell-type specific transcripts by gene expression profiling in single neurons Nature Genetics. 23: 59-59. DOI: 10.1038/14354 |
0.36 |
|
| 1998 |
Cheung VG, Gregg JP, Gogolin-Ewens KJ, Bandong J, Stanley CA, Baker L, Higgins MJ, Nowak NJ, Shows TB, Ewens WJ, Nelson SF, Spielman RS. Linkage-disequilibrium mapping without genotyping Nature Genetics. 18: 225-230. PMID 9500543 DOI: 10.1038/Ng0398-225 |
0.386 |
|
| 1998 |
Cheung VG, Nelson SF. Genomic mismatch scanning identifies human genomic DNA shared identical by descent Genomics. 47: 1-6. PMID 9465290 DOI: 10.1006/Geno.1997.5082 |
0.37 |
|
| 1996 |
Cheung VG, Nelson SF. Whole genome amplification using a degenerate oligonucleotide primer allows hundreds of genotypes to be performed on less than one nanogram of genomic DNA Proceedings of the National Academy of Sciences of the United States of America. 93: 14676-14679. PMID 8962113 DOI: 10.1073/Pnas.93.25.14676 |
0.372 |
|
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