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Nicholas B. Larson, Ph.D. - Publications

Affiliations: 
2011 Statistics Iowa State University, Ames, IA, United States 
Area:
Statistics, Bioinformatics Biology, Genetics
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27 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Garg PK, Buzkova P, Wassell CL, Allison M, Criqui M, Larson NB, Bielinski SJ. Association of Circulating Hepatocyte Growth Factor and Risk of Incident Peripheral Artery Disease: The Multi-Ethnic Study of Atherosclerosis. Angiology. 3319720912935. PMID 32202143 DOI: 10.1177/0003319720912935  0.333
2019 Decker PA, Larson NB, Bell EJ, Pankow JS, Hanson NQ, Wassel CL, Tsai MY, Bielinski SJ. Increased hepatocyte growth factor levels over 2 years are associated with coronary heart disease: the Multi-Ethnic Study of Atherosclerosis (MESA). American Heart Journal. 213: 30-34. PMID 31085382 DOI: 10.1016/J.Ahj.2019.03.018  0.32
2019 DeRycke MS, Larson MC, Nair AA, McDonnell SK, French AJ, Tillmans LS, Riska SM, Baheti S, Fogarty ZC, Larson NB, O'Brien DR, Cheville JC, Wang L, Schaid DJ, Thibodeau SN. An expanded variant list and assembly annotation identifies multiple novel coding and noncoding genes for prostate cancer risk using a normal prostate tissue eQTL data set. Plos One. 14: e0214588. PMID 30958860 DOI: 10.1371/Journal.Pone.0214588  0.359
2019 Larson NB, Chen J, Schaid DJ. A review of kernel methods for genetic association studies. Genetic Epidemiology. PMID 30604442 DOI: 10.1002/Gepi.22180  0.305
2018 Kraja AT, Liu C, Fetterman JL, Graff M, Have CT, Gu C, Yanek LR, Feitosa MF, Arking DE, Chasman DI, Young K, Ligthart S, Hill WD, Weiss S, Luan J, ... ... Larson NB, et al. Associations of Mitochondrial and Nuclear Mitochondrial Variants and Genes with Seven Metabolic Traits. American Journal of Human Genetics. PMID 30595373 DOI: 10.1016/J.Ajhg.2018.12.001  0.35
2018 Winham SJ, Larson NB, Armasu SM, Fogarty ZC, Larson MC, McCauley BM, Wang C, Lawrenson K, Gayther S, Cunningham JM, Fridley BL, Goode EL. Molecular signatures of X chromosome inactivation and associations with clinicaloutcomes in epithelial ovarian cancer. Human Molecular Genetics. PMID 30576442 DOI: 10.1093/Hmg/Ddy444  0.347
2018 Hua JT, Ahmed M, Guo H, Zhang Y, Chen S, Soares F, Lu J, Zhou S, Wang M, Li H, Larson NB, McDonnell SK, Patel PS, Liang Y, Yao CQ, et al. Risk SNP-Mediated Promoter-Enhancer Switching Drives Prostate Cancer through lncRNA PCAT19. Cell. PMID 30033362 DOI: 10.1016/J.Cell.2018.06.014  0.316
2018 Schaid DJ, Chen W, Larson NB. From genome-wide associations to candidate causal variants by statistical fine-mapping. Nature Reviews. Genetics. PMID 29844615 DOI: 10.1038/S41576-018-0016-Z  0.305
2018 Bell EJ, Decker PA, Tsai MY, Pankow JS, Hanson NQ, Wassel CL, Larson NB, Cohoon KP, Budoff MJ, Polak JF, Stein JH, Bielinski SJ. Hepatocyte growth factor is associated with progression of atherosclerosis: The Multi-Ethnic Study of Atherosclerosis (MESA). Atherosclerosis. 272: 162-167. PMID 29609131 DOI: 10.1016/J.Atherosclerosis.2018.03.040  0.307
2017 Larson NB, McDonnell SK, Fogarty Z, Larson MC, Cheville J, Riska S, Baheti S, Weber AM, Nair AA, Wang L, O'Brien D, Davila J, Schaid DJ, Thibodeau SN. Network-directed cis-mediator analysis of normal prostate tissue expression profiles reveals downstream regulatory associations of prostate cancer susceptibility loci. Oncotarget. 8: 85896-85908. PMID 29156765 DOI: 10.18632/Oncotarget.20717  0.355
2017 Larson NB, Fogarty ZC, Larson MC, Kalli KR, Lawrenson K, Gayther S, Fridley BL, Goode EL, Winham SJ. An integrative approach to assess X-chromosome inactivation using allele-specific expression with applications to epithelial ovarian cancer. Genetic Epidemiology. PMID 29119601 DOI: 10.1002/Gepi.22091  0.324
2017 Ioannidis NM, Davis JR, DeGorter MK, Larson NB, McDonnell SK, French AJ, Battle AJ, Hastie TJ, Thibodeau SN, Montgomery SB, Bustamante CD, Sieh W, Whittemore AS. FIRE: functional inference of genetic variants that regulate gene expression. Bioinformatics (Oxford, England). PMID 28961785 DOI: 10.1093/Bioinformatics/Btx534  0.348
2017 Larson NB, McDonnell S, Cannon Albright L, Teerlink C, Stanford J, Ostrander EA, Isaacs WB, Xu J, Cooney KA, Lange E, Schleutker J, Carpten JD, Powell I, Bailey-Wilson JE, Cussenot O, et al. gsSKAT: Rapid gene set analysis and multiple testing correction for rare-variant association studies using weighted linear kernels. Genetic Epidemiology. PMID 28211093 DOI: 10.1002/Gepi.22036  0.339
2017 Winham SJ, Larson NB, Armasu SM, Fogarty ZC, Larson MC, Kalli KR, Lawrenson K, Gayther S, Fridley BL, Goode EL. Abstract 2420: Integrative analyses of gene expression, DNA methylation, genotype and copy number alterations characterize X-chromosome inactivation in ovarian cancer Cancer Research. 77: 2420-2420. DOI: 10.1158/1538-7445.Am2017-2420  0.331
2016 Berardi C, Wassel CL, Decker PA, Larson NB, Kirsch PS, de Andrade M, Tsai MY, Pankow JS, Sale MM, Sicotte H, Tang W, Hanson NQ, McDermott MM, Criqui MH, Allison MA, et al. Elevated Levels of Adhesion Proteins Are Associated With Low Ankle-Brachial Index: Multi-Ethnic Study of Atherosclerosis. Angiology. PMID 27436494 DOI: 10.1177/0003319716659178  0.316
2016 Larson NB, McDonnell S, Albright LC, Teerlink C, Stanford J, Ostrander EA, Isaacs WB, Xu J, Cooney KA, Lange E, Schleutker J, Carpten JD, Powell I, Bailey-Wilson J, Cussenot O, et al. Post hoc Analysis for Detecting Individual Rare Variant Risk Associations Using Probit Regression Bayesian Variable Selection Methods in Case-Control Sequencing Studies. Genetic Epidemiology. PMID 27312771 DOI: 10.1002/Gepi.21983  0.354
2016 Larson NB, Decker PA, Wassel CL, Pankow JS, Tang W, Hanson NQ, Tsai MY, Bielinski SJ. Blood group antigen loci demonstrate multivariate genetic associations with circulating cellular adhesion protein levels in the Multi-Ethnic Study of Atherosclerosis. Human Genetics. PMID 26883866 DOI: 10.1007/S00439-016-1643-0  0.352
2016 Earp M, Winham SJ, Larson N, Permuth JB, Sicotte H, Chien J, Anton-Culver H, Bandera EV, Berchuck A, Cook LS, Cramer D, Doherty JA, Goodman MT, Levine DA, Monteiro AN, et al. A targeted genetic association study of epithelial ovarian cancer susceptibility. Oncotarget. 7: 7381-9. PMID 26848776 DOI: 10.18632/Oncotarget.7121  0.333
2015 Thibodeau SN, French AJ, McDonnell SK, Cheville J, Middha S, Tillmans L, Riska S, Baheti S, Larson MC, Fogarty Z, Zhang Y, Larson N, Nair A, O'Brien D, Wang L, et al. Identification of candidate genes for prostate cancer-risk SNPs utilizing a normal prostate tissue eQTL data set. Nature Communications. 6: 8653. PMID 26611117 DOI: 10.1038/Ncomms9653  0.354
2015 Larson NB, Berardi C, Decker PA, Wassel CL, Kirsch PS, Pankow JS, Sale MM, de Andrade M, Sicotte H, Tang W, Hanson NQ, Tsai MY, Taylor KD, Bielinski SJ. Trans-Ethnic Meta-Analysis Identifies Common and Rare Variants Associated with Hepatocyte Growth Factor Levels in the Multi-Ethnic Study of Atherosclerosis (MESA). Annals of Human Genetics. 79: 264-74. PMID 25998175 DOI: 10.1111/Ahg.12119  0.38
2015 Larson NB, McDonnell S, French AJ, Fogarty Z, Cheville J, Middha S, Riska S, Baheti S, Nair AA, Wang L, Schaid DJ, Thibodeau SN. Comprehensively Evaluating cis-Regulatory Variation in the Human Prostate Transcriptome by Using Gene-Level Allele-Specific Expression. American Journal of Human Genetics. 96: 869-82. PMID 25983244 DOI: 10.1016/J.Ajhg.2015.04.015  0.357
2015 Berardi C, Larson NB, Decker PA, Wassel CL, Kirsch PS, Pankow JS, Sale MM, de Andrade M, Sicotte H, Tang W, Hanson NQ, Tsai MY, Chen YD, Bielinski SJ. Multi-ethnic analysis reveals soluble L-selectin may be post-transcriptionally regulated by 3'UTR polymorphism: the Multi-Ethnic Study of Atherosclerosis (MESA). Human Genetics. 134: 393-403. PMID 25576479 DOI: 10.1007/S00439-014-1527-0  0.385
2014 Paschold A, Larson NB, Marcon C, Schnable JC, Yeh CT, Lanz C, Nettleton D, Piepho HP, Schnable PS, Hochholdinger F. Nonsyntenic genes drive highly dynamic complementation of gene expression in maize hybrids. The Plant Cell. 26: 3939-48. PMID 25315323 DOI: 10.1105/Tpc.114.130948  0.516
2014 Larson NB, Schaid DJ. Regularized rare variant enrichment analysis for case-control exome sequencing data. Genetic Epidemiology. 38: 104-13. PMID 24382715 DOI: 10.1002/Gepi.21783  0.351
2014 Larson NB, Jenkins GD, Larson MC, Vierkant RA, Sellers TA, Phelan CM, Schildkraut JM, Sutphen R, Pharoah PP, Gayther SA, Wentzensen N, Goode EL, Fridley BL. Kernel canonical correlation analysis for assessing gene-gene interactions and application to ovarian cancer. European Journal of Human Genetics : Ejhg. 22: 126-31. PMID 23591404 DOI: 10.1038/Ejhg.2013.69  0.369
2013 Larson NB, Schaid DJ. A kernel regression approach to gene-gene interaction detection for case-control studies. Genetic Epidemiology. 37: 695-703. PMID 23868214 DOI: 10.1002/Gepi.21749  0.359
2012 Paschold A, Jia Y, Marcon C, Lund S, Larson NB, Yeh CT, Ossowski S, Lanz C, Nettleton D, Schnable PS, Hochholdinger F. Complementation contributes to transcriptome complexity in maize (Zea mays L.) hybrids relative to their inbred parents. Genome Research. 22: 2445-54. PMID 23086286 DOI: 10.1101/Gr.138461.112  0.509
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