| Year |
Citation |
Score |
| 2023 |
Carey ME, Dyson ZA, Ingle DJ, Amir A, Aworh MK, Chattaway MA, Chew KL, Crump JA, Feasey NA, Howden BP, Keddy KH, Maes M, Parry CM, Van Puyvelde S, Webb HE, ... ... Rasko DA, et al. Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Typhi genomes. Elife. 12. PMID 37697804 DOI: 10.7554/eLife.85867 |
0.303 |
|
| 2023 |
Hazen TH, Michalski JM, Tennant SM, Rasko DA. Genomic diversity of non-diarrheagenic fecal Escherichia coli from children in sub-Saharan Africa and south Asia and their relatedness to diarrheagenic E. coli. Nature Communications. 14: 1400. PMID 36918537 DOI: 10.1038/s41467-023-36337-y |
0.325 |
|
| 2022 |
Sikorski MJ, Hazen TH, Desai SN, Nimarota-Brown S, Tupua S, Sialeipata M, Rambocus S, Ingle DJ, Duchene S, Ballard SA, Valcanis M, Zufan S, Ma J, Sahl JW, Maes M, ... ... Rasko DA, et al. Persistence of Rare Salmonella Typhi Genotypes Susceptible to First-Line Antibiotics in the Remote Islands of Samoa. Mbio. e0192022. PMID 36094088 DOI: 10.1128/mbio.01920-22 |
0.339 |
|
| 2022 |
Adedrian T, Hitchcock S, O'Hara LM, Michalski JM, Johnson JK, Calfee DP, Miller LG, Hazen TH, Harris AD, Rasko DA. Comparative Genomics Identifies Features Associated with Methicillin-Resistant Staphylococcus aureus (MRSA) Transmission in Hospital Settings. Msphere. e0011622. PMID 35578992 DOI: 10.1128/msphere.00116-22 |
0.331 |
|
| 2022 |
Verhoeve VI, Brammer JA, Driscoll TP, Kambouris AR, Rasko DA, Cross AS, Gillespie JJ. Genome sequencing of Pseudomonas aeruginosa strain M2 illuminates traits of an opportunistic pathogen of burn wounds. G3 (Bethesda, Md.). 12. PMID 35348684 DOI: 10.1093/g3journal/jkac073 |
0.324 |
|
| 2021 |
Sikorski MJ, Hazen TH, Vyas G, Michalski JM, Rasko DA. Draft Genome Sequences of Two Enteroinvasive Escherichia coli Strains Representative of Major Enteroinvasive Clades. Microbiology Resource Announcements. 10: e0031921. PMID 34110238 DOI: 10.1128/MRA.00319-21 |
0.406 |
|
| 2020 |
Watson VE, Hazen TH, Rasko DA, Jacob ME, Elfenbein JR, Stauffer SH, Gookin JL. Comparative Genomics of Atypical Enteropathogenic from Kittens and Children Identifies Bacterial Factors Associated with Virulence in Kittens. Infection and Immunity. PMID 33257534 DOI: 10.1128/IAI.00619-20 |
0.384 |
|
| 2020 |
Lee VT, Ghodssi R, El-Sayed NM, Malik RD, Goloubeva OG, Hazen TH, Rasko DA. Draft Genome Sequence of Pseudomonas aeruginosa Strain PA14-UM. Microbiology Resource Announcements. 9. PMID 33184157 DOI: 10.1128/MRA.00978-20 |
0.36 |
|
| 2020 |
Hazen TH, Johnson JK, Harris AD, Rasko DA. Genome Sequencing of Escherichia coli and Klebsiella pneumoniae Isolates That Harbor the FOX-5 β-Lactamase Gene. Microbiology Resource Announcements. 9. PMID 33154016 DOI: 10.1128/MRA.01116-20 |
0.352 |
|
| 2020 |
Hazen TH, Poonawala H, Saharia KK, Donnenberg MS, Rasko DA. Draft Genome Sequence of Escherichia coli Strain UMD142. Microbiology Resource Announcements. 9. PMID 33154008 DOI: 10.1128/MRA.01009-20 |
0.353 |
|
| 2020 |
Sikorski MJ, Hazen TH, Vyas G, Michalski JM, Rasko DA. Genome Sequences of Four Shigella boydii Strains Representative of the Major S. boydii Clades. Microbiology Resource Announcements. 9. PMID 33033129 DOI: 10.1128/MRA.00881-20 |
0.306 |
|
| 2020 |
Boisen N, Østerlund MT, Joensen KG, Santiago AE, Mandomando I, Cravioto A, Chattaway MA, Gonyar LA, Overballe-Petersen S, Stine OC, Rasko DA, Scheutz F, Nataro JP. Redefining enteroaggregative Escherichia coli (EAEC): Genomic characterization of epidemiological EAEC strains. Plos Neglected Tropical Diseases. 14: e0008613. PMID 32898134 DOI: 10.1371/Journal.Pntd.0008613 |
0.515 |
|
| 2020 |
Chandler CE, Harberts EM, Pelletier MR, Thaipisuttikul I, Jones JW, Hajjar AM, Sahl JW, Goodlett DR, Pride AC, Rasko DA, Trent MS, Bishop RE, Ernst RK. Early evolutionary loss of the lipid A modifying enzyme PagP resulting in innate immune evasion in . Proceedings of the National Academy of Sciences of the United States of America. PMID 32868431 DOI: 10.1073/Pnas.1917504117 |
0.319 |
|
| 2020 |
Perault AI, Chandler CE, Rasko DA, Ernst RK, Wolfgang MC, Cotter PA. Host Adaptation Predisposes Pseudomonas aeruginosa to Type VI Secretion System-Mediated Predation by the Burkholderia cepacia Complex. Cell Host & Microbe. PMID 32755549 DOI: 10.1016/J.Chom.2020.06.019 |
0.368 |
|
| 2020 |
Hernandes RT, Hazen TH, Dos Santos LF, Richter TKS, Michalski JM, Rasko DA. Comparative genomic analysis provides insight into the phylogeny and virulence of atypical enteropathogenic Escherichia coli strains from Brazil. Plos Neglected Tropical Diseases. 14: e0008373. PMID 32479541 DOI: 10.1371/Journal.Pntd.0008373 |
0.517 |
|
| 2019 |
Kuhlmann FM, Martin J, Hazen TH, Vickers TJ, Pashos M, Okhuysen PC, Gómez-Duarte OG, Cebelinski E, Boxrud D, Del Canto F, Vidal R, Qadri F, Mitreva M, Rasko DA, Fleckenstein JM. Conservation and global distribution of non-canonical antigens in Enterotoxigenic Escherichia coli. Plos Neglected Tropical Diseases. 13: e0007825. PMID 31756188 DOI: 10.1371/Journal.Pntd.0007825 |
0.317 |
|
| 2019 |
Rasko DA, Del Canto F, Luo Q, Fleckenstein JM, Vidal R, Hazen TH. Comparative genomic analysis and molecular examination of the diversity of enterotoxigenic Escherichia coli isolates from Chile. Plos Neglected Tropical Diseases. 13: e0007828. PMID 31747410 DOI: 10.1371/Journal.Pntd.0007828 |
0.52 |
|
| 2019 |
Chanin RB, Nickerson KP, Llanos-Chea A, Sistrunk JR, Rasko DA, Kumar DKV, de la Parra J, Auclair JR, Ding J, Li K, Dogiparthi SK, Kusber BJD, Faherty CS. Adherence Factor Expression in -Like Conditions. Msphere. 4. PMID 31722995 DOI: 10.1128/mSphere.00751-19 |
0.325 |
|
| 2019 |
Hazen TH, Rasko DA. The Complete Genome of the Atypical Enteropathogenic Escherichia coli Archetype Isolate E110019 Highlights a Role for Plasmids in Dissemination of the Type III Secreted Effector EspT. Infection and Immunity. 87. PMID 31358567 DOI: 10.1128/Iai.00412-19 |
0.489 |
|
| 2019 |
Bornstein K, Tennant SM, Hazen TH, Sorkin JD, Tapia MD, Sow SO, Onwuchekwa U, Levine MM, Rasko DA. Genetic changes associated with the temporal shift in invasive non-typhoidal Salmonella serovars in Bamako Mali. Plos Neglected Tropical Diseases. 13: e0007297. PMID 31170153 DOI: 10.1371/Journal.Pntd.0007297 |
0.32 |
|
| 2019 |
Hazen TH, Nagaraj S, Sen S, Permala-Booth J, Del Canto F, Vidal R, Barry EM, Bitoun JP, Chen WH, Tennant SM, Rasko DA. Genome and Functional Characterization of Colonization Factor Antigen I- and CS6-Encoding Heat-Stable Enterotoxin-Only Enterotoxigenic Reveals Lineage and Geographic Variation. Msystems. 4. PMID 30944874 DOI: 10.1128/mSystems.00329-18 |
0.411 |
|
| 2019 |
Montero DA, Canto FD, Velasco J, Colello R, Padola NL, Salazar JC, Martin CS, Oñate A, Blanco J, Rasko DA, Contreras C, Puente JL, Scheutz F, Franz E, Vidal RM. Cumulative acquisition of pathogenicity islands has shaped virulence potential and contributed to the emergence of LEE-negative Shiga toxin-producing Escherichia coli strains. Emerging Microbes & Infections. 8: 486-502. PMID 30924410 DOI: 10.1080/22221751.2019.1595985 |
0.47 |
|
| 2019 |
Vidal RM, Muhsen K, Tennant SM, Svennerholm AM, Sow SO, Sur D, Zaidi AKM, Faruque ASG, Saha D, Adegbola R, Hossain MJ, Alonso PL, Breiman RF, Bassat Q, Tamboura B, ... ... Rasko DA, et al. Colonization factors among enterotoxigenic Escherichia coli isolates from children with moderate-to-severe diarrhea and from matched controls in the Global Enteric Multicenter Study (GEMS). Plos Neglected Tropical Diseases. 13: e0007037. PMID 30608930 DOI: 10.1371/Journal.Pntd.0007037 |
0.331 |
|
| 2018 |
Chandler CE, Horspool AM, Hill PJ, Wozniak DJ, Schertzer JW, Rasko DA, Ernst RK. Genomic and phenotypic diversity among ten laboratory isolates of PAO1. Journal of Bacteriology. PMID 30530517 DOI: 10.1128/Jb.00595-18 |
0.43 |
|
| 2018 |
Cádiz L, Torres A, Valdés R, Vera G, Gutiérrez D, Levine MM, Montero DA, O'Ryan M, Rasko DA, Stine OC, Vidal R, Del Canto F. Coli Surface Antigen 26 Acts as an Adherence Determinant of Enterotoxigenic and Is Cross-Recognized by Anti-CS20 Antibodies. Frontiers in Microbiology. 9: 2463. PMID 30459723 DOI: 10.3389/Fmicb.2018.02463 |
0.382 |
|
| 2018 |
Richter TKS, Hazen TH, Lam D, Coles CL, Seidman JC, You Y, Silbergeld EK, Fraser CM, Rasko DA. Temporal Variability of Diversity in the Gastrointestinal Tracts of Tanzanian Children with and without Exposure to Antibiotics. Msphere. 3. PMID 30404930 DOI: 10.1128/mSphere.00558-18 |
0.372 |
|
| 2018 |
Richter TKS, Michalski JM, Zanetti L, Tennant SM, Chen WH, Rasko DA. Responses of the Human Gut Population to Pathogen and Antibiotic Disturbances. Msystems. 3. PMID 30057943 DOI: 10.1128/mSystems.00047-18 |
0.382 |
|
| 2018 |
Hazen TH, Mettus R, McElheny CL, Bowler SL, Nagaraj S, Doi Y, Rasko DA. Diversity among bla-containing plasmids in Escherichia coli and other bacterial species isolated from the same patients. Scientific Reports. 8: 10291. PMID 29980699 DOI: 10.1038/S41598-018-28085-7 |
0.496 |
|
| 2018 |
Chakraborty S, Randall A, Vickers TJ, Molina D, Harro CD, DeNearing B, Brubaker J, Sack DA, Bourgeois AL, Felgner PL, Liang X, Mani S, Wenzel H, Townsend RR, Gilmore PE, ... ... Rasko DA, et al. Human experimental challenge with enterotoxigenic Escherichia coli elicits immune responses to canonical and novel antigens relevant to vaccine development. The Journal of Infectious Diseases. PMID 29800314 DOI: 10.1093/Infdis/Jiy312 |
0.302 |
|
| 2018 |
Robertson CD, Hazen TH, Kaper JB, Rasko DA, Hansen AM. Phosphotyrosine-Mediated Regulation of EnterohemorrhagicVirulence. Mbio. 9. PMID 29487233 DOI: 10.1128/Mbio.00097-18 |
0.375 |
|
| 2018 |
Hazen TH, Mettus RT, McElheny CL, Bowler SL, Doi Y, Rasko DA. Draft genome sequences of blaKPC-containing Enterobacter aerogenes, Citrobacter freundii, and Citrobacter koseri strains Genome Announcements. 6. PMID 29472325 DOI: 10.1128/Genomea.00035-18 |
0.474 |
|
| 2017 |
Santiago AE, Yan MB, Hazen TH, Sauder B, Meza-Segura M, Rasko DA, Kendall MM, Ruiz-Perez F, Nataro JP. The AraC Negative Regulator family modulates the activity of histone-like proteins in pathogenic bacteria. Plos Pathogens. 13: e1006545. PMID 28806780 DOI: 10.1371/Journal.Ppat.1006545 |
0.424 |
|
| 2017 |
Hazen TH, Daugherty SC, Shetty AC, Nataro JP, Rasko DA. Transcriptional Variation of Diverse Enteropathogenic Escherichia coli Isolates under Virulence-Inducing Conditions. Msystems. 2. PMID 28766584 DOI: 10.1128/mSystems.00024-17 |
0.396 |
|
| 2017 |
Montero DA, Velasco J, Del Canto F, Puente JL, Padola NL, Rasko DA, Farfán M, Salazar JC, Vidal R. Locus of Adhesion and Autoaggregation (LAA), a pathogenicity island present in emerging Shiga Toxin-producing Escherichia coli strains. Scientific Reports. 7: 7011. PMID 28765569 DOI: 10.1038/S41598-017-06999-Y |
0.481 |
|
| 2017 |
Hazen TH, Michalski J, Nagaraj S, Okeke IN, Rasko DA. Characterization of a large antibiotic resistance plasmid found in enteropathogenic Escherichia coli strain B171 and its relatedness to plasmids of diverse E. coli and Shigella. Antimicrobial Agents and Chemotherapy. PMID 28674052 DOI: 10.1128/Aac.00995-17 |
0.481 |
|
| 2017 |
Hazen TH, Michalski J, Luo Q, Shetty AC, Daugherty SC, Fleckenstein JM, Rasko DA. Comparative genomics and transcriptomics of Escherichia coli isolates carrying virulence factors of both enteropathogenic and enterotoxigenic E. coli. Scientific Reports. 7: 3513. PMID 28615618 DOI: 10.1038/S41598-017-03489-Z |
0.498 |
|
| 2017 |
Sahl JW, Sistrunk JR, Baby NI, Begum Y, Luo Q, Sheikh A, Qadri F, Fleckenstein JM, Rasko DA. Insights into enterotoxigenic Escherichia coli diversity in Bangladesh utilizing genomic epidemiology. Scientific Reports. 7: 3402. PMID 28611468 DOI: 10.1038/S41598-017-03631-X |
0.511 |
|
| 2017 |
Rasko DA. Changes in microbiome during and after travellers’ diarrhea: what we know and what we do not Journal of Travel Medicine. 24. PMID 28521002 DOI: 10.1093/Jtm/Tax017 |
0.37 |
|
| 2017 |
Nickerson KP, Chanin RB, Sistrunk JR, Rasko DA, Fink PJ, Barry EM, Nataro JP, Faherty CS. Analysis of Shigella flexneri Resistance, Biofilm Formation, and Transcriptional Profile in Response to Bile Salts. Infection and Immunity. PMID 28348056 DOI: 10.1128/Iai.01067-16 |
0.377 |
|
| 2016 |
Del Canto F, O'Ryan M, Pardo M, Torres A, Gutiérrez D, Cádiz L, Valdés R, Mansilla A, Martínez R, Hernández D, Caro B, Levine MM, Rasko DA, Hill CM, Pop M, et al. Chaperone-Usher Pili Loci of Colonization Factor-Negative Human Enterotoxigenic Escherichia coli. Frontiers in Cellular and Infection Microbiology. 6: 200. PMID 28111618 DOI: 10.3389/Fcimb.2016.00200 |
0.418 |
|
| 2016 |
Faherty CS, Wu T, Morris CR, Grassel CL, Rasko DA, Harper JM, Shea-Donohue T, Fasano A, Barry EM. The Synthesis of OspD3 (ShET2) in Shigella flexneri is Independent of OspC1. Gut Microbes. 0. PMID 27657187 DOI: 10.1080/19490976.2016.1239682 |
0.387 |
|
| 2016 |
Lozano GL, Holt J, Ravel J, Rasko DA, Thomas MG, Handelsman J. Draft Genome Sequence of Biocontrol Agent Bacillus cereus UW85. Genome Announcements. 4. PMID 27587823 DOI: 10.1128/Genomea.00910-16 |
0.408 |
|
| 2016 |
Hazen TH, Donnenberg MS, Panchalingam S, Antonio M, Hossain A, Mandomando I, Ochieng JB, Ramamurthy T, Tamboura B, Qureshi S, Quadri F, Zaidi A, Kotloff KL, Levine MM, Barry EM, ... ... Rasko DA, et al. Genomic diversity of EPEC associated with clinical presentations of differing severity. Nature Microbiology. 1: 15014. PMID 27571975 DOI: 10.1038/Nmicrobiol.2015.14 |
0.46 |
|
| 2016 |
Sistrunk JR, Nickerson KP, Chanin RB, Rasko DA, Faherty CS. Survival of the Fittest: How Bacterial Pathogens Utilize Bile To Enhance Infection. Clinical Microbiology Reviews. 29: 819-36. PMID 27464994 DOI: 10.1128/Cmr.00031-16 |
0.38 |
|
| 2016 |
Wallace L, Daugherty SC, Nagaraj S, Johnson JK, Harris AD, Rasko DA. The use of comparative genomics to characterize the diversity of Acinetobacter baumannii surveillance isolates in a health care institution. Antimicrobial Agents and Chemotherapy. PMID 27458211 DOI: 10.1128/Aac.00477-16 |
0.509 |
|
| 2016 |
Chibucos MC, Soliman S, Gebremariam T, Lee H, Daugherty S, Orvis J, Shetty AC, Crabtree J, Hazen TH, Etienne KA, Kumari P, O'Connor TD, Rasko DA, Filler SG, Fraser CM, et al. An integrated genomic and transcriptomic survey of mucormycosis-causing fungi. Nature Communications. 7: 12218. PMID 27447865 DOI: 10.1038/Ncomms12218 |
0.457 |
|
| 2016 |
Hazen TH, Leonard SR, Lampel KA, Lacher DW, Maurelli AT, Rasko DA. Investigating the relatedness of enteroinvasive Escherichia coli to other E. coli and Shigella using comparative genomics. Infection and Immunity. PMID 27271741 DOI: 10.1128/Iai.00350-16 |
0.527 |
|
| 2016 |
Leonard SR, Mammel MK, Rasko DA, Lacher DW. Hybrid Shiga Toxin-producing and Enterotoxigenic Escherichia species Cryptic Lineage 1 Strain 7v Harbors a Hybrid Plasmid. Applied and Environmental Microbiology. PMID 27208138 DOI: 10.1128/Aem.01129-16 |
0.502 |
|
| 2016 |
Kania DA, Hazen TH, Hossain A, Nataro JP, Rasko DA. Genome diversity of Shigella boydii. Pathogens and Disease. PMID 27056949 DOI: 10.1093/Femspd/Ftw027 |
0.463 |
|
| 2016 |
Nickerson K, Chanin RB, Sistrunk JR, Rasko DA, Faherty CS. 974 Bile Salt Exposure Regulates Shigella flexneri Virulence Gene Expression to Facilitate Mucosal Interaction and Colonic Infection Gastroenterology. 150. DOI: 10.1016/S0016-5085(16)30742-9 |
0.331 |
|
| 2015 |
Kessler R, Nisa S, Hazen TH, Horneman A, Amoroso A, Rasko DA, Donnenberg MS. Diarrhea, bacteremia and multiorgan dysfunction due to an extraintestinal pathogenic Escherichia coli strain with enteropathogenic E. coli genes. Pathogens and Disease. 73: ftv076. PMID 26410828 DOI: 10.1093/Femspd/Ftv076 |
0.457 |
|
| 2015 |
Hazen TH, Kaper JB, Nataro JP, Rasko DA. Comparative Genomics Provides Insight into the Diversity of the Attaching and Effacing Escherichia coli Virulence Plasmids. Infection and Immunity. 83: 4103-17. PMID 26238712 DOI: 10.1128/Iai.00769-15 |
0.534 |
|
| 2015 |
Sahl JW, Schupp JM, Rasko DA, Colman RE, Foster JT, Keim P. Phylogenetically typing bacterial strains from partial SNP genotypes observed from direct sequencing of clinical specimen metagenomic data. Genome Medicine. 7: 52. PMID 26136847 DOI: 10.1186/S13073-015-0176-9 |
0.412 |
|
| 2015 |
Hazen TH, Daugherty SC, Shetty A, Mahurkar AA, White O, Kaper JB, Rasko DA. RNA-Seq analysis of isolate- and growth phase-specific differences in the global transcriptomes of enteropathogenic Escherichia coli prototype isolates. Frontiers in Microbiology. 6: 569. PMID 26124752 DOI: 10.3389/Fmicb.2015.00569 |
0.478 |
|
| 2015 |
Sahl JW, Sistrunk JR, Fraser CM, Hine E, Baby N, Begum Y, Luo Q, Sheikh A, Qadri F, Fleckenstein JM, Rasko DA. Examination of the Enterotoxigenic Escherichia coli Population Structure during Human Infection. Mbio. 6: e00501. PMID 26060273 DOI: 10.1128/Mbio.00501-15 |
0.505 |
|
| 2015 |
Donnenberg MS, Hazen TH, Farag TH, Panchalingam S, Antonio M, Hossain A, Mandomando I, Ochieng JB, Ramamurthy T, Tamboura B, Zaidi A, Levine MM, Kotloff K, Rasko DA, Nataro JP. Bacterial Factors Associated with Lethal Outcome of Enteropathogenic Escherichia coli Infection: Genomic Case-Control Studies. Plos Neglected Tropical Diseases. 9: e0003791. PMID 25978422 DOI: 10.1371/Journal.Pntd.0003791 |
0.433 |
|
| 2015 |
Sanjar F, Rusconi B, Hazen TH, Koenig SS, Mammel MK, Feng PC, Rasko DA, Eppinger M. Characterization of the pathogenome and phylogenomic classification of enteropathogenic Escherichia coli of the O157:non-H7 serotypes. Pathogens and Disease. 73. PMID 25962987 DOI: 10.1093/Femspd/Ftv033 |
0.386 |
|
| 2015 |
Hazen TH, Lafon PC, Garrett NM, Lowe TM, Silberger DJ, Rowe LA, Frace M, Parsons MB, Bopp CA, Rasko DA, Sobecky PA. Insights into the environmental reservoir of pathogenic Vibrio parahaemolyticus using comparative genomics. Frontiers in Microbiology. 6: 204. PMID 25852665 DOI: 10.3389/Fmicb.2015.00204 |
0.484 |
|
| 2015 |
Luo Q, Qadri F, Kansal R, Rasko DA, Sheikh A, Fleckenstein JM. Conservation and immunogenicity of novel antigens in diverse isolates of enterotoxigenic Escherichia coli. Plos Neglected Tropical Diseases. 9: e0003446. PMID 25629897 DOI: 10.1371/Journal.Pntd.0003446 |
0.328 |
|
| 2015 |
Brumbaugh AR, Smith SN, Subashchandrabose S, Himpsl SD, Hazen TH, Rasko DA, Mobley HL. Blocking yersiniabactin import attenuates extraintestinal pathogenic Escherichia coli in cystitis and pyelonephritis and represents a novel target to prevent urinary tract infection. Infection and Immunity. 83: 1443-50. PMID 25624354 DOI: 10.1128/Iai.02904-14 |
0.424 |
|
| 2015 |
Sahl JW, Morris CR, Emberger J, Fraser CM, Ochieng JB, Juma J, Fields B, Breiman RF, Gilmour M, Nataro JP, Rasko DA. Defining the phylogenomics of Shigella species: a pathway to diagnostics. Journal of Clinical Microbiology. 53: 951-60. PMID 25588655 DOI: 10.1128/Jcm.03527-14 |
0.459 |
|
| 2015 |
Franz E, Delaquis P, Morabito S, Beutin L, Gobius K, Rasko DA, Jim B, Nigel F, Osek J, Lindstedt BA, Muniesa M, Manning S, LeJeune J, Callaway T, Beatson S, et al. Corrigendum to "Exploiting the explosion of information associated with whole genome sequencing to tackle Shiga toxin-producing Escherichia coli (STEC) in global food production systems" [Int. J. Food Microbiol. 187 (2014) 57-72] doi: 10.1016/j.ijfoodmicro.2014.07.002 International Journal of Food Microbiology. 193: 159. DOI: 10.1016/J.Ijfoodmicro.2014.09.026 |
0.35 |
|
| 2014 |
Sadiq SM, Hazen TH, Rasko DA, Eppinger M. EHEC genomics: Past, present, and future Microbiology Spectrum. 2. PMID 26104203 DOI: 10.1128/Microbiolspec.Ehec-0020-2013 |
0.48 |
|
| 2014 |
Subashchandrabose S, Hazen TH, Brumbaugh AR, Himpsl SD, Smith SN, Ernst RD, Rasko DA, Mobley HL. Host-specific induction of Escherichia coli fitness genes during human urinary tract infection. Proceedings of the National Academy of Sciences of the United States of America. 111: 18327-32. PMID 25489107 DOI: 10.1073/Pnas.1415959112 |
0.397 |
|
| 2014 |
Curtis MM, Russell R, Moreira CG, Adebesin AM, Wang C, Williams NS, Taussig R, Stewart D, Zimmern P, Lu B, Prasad RN, Zhu C, Rasko DA, Huntley JF, Falck JR, et al. QseC inhibitors as an antivirulence approach for Gram-negative pathogens. Mbio. 5: e02165. PMID 25389178 DOI: 10.1128/Mbio.02165-14 |
0.357 |
|
| 2014 |
von Mentzer A, Connor TR, Wieler LH, Semmler T, Iguchi A, Thomson NR, Rasko DA, Joffre E, Corander J, Pickard D, Wiklund G, Svennerholm AM, Sjöling Å, Dougan G. Identification of enterotoxigenic Escherichia coli (ETEC) clades with long-term global distribution. Nature Genetics. 46: 1321-6. PMID 25383970 DOI: 10.1038/Ng.3145 |
0.445 |
|
| 2014 |
Crabtree J, Agrawal S, Mahurkar A, Myers GS, Rasko DA, White O. Circleator: flexible circular visualization of genome-associated data with BioPerl and SVG. Bioinformatics (Oxford, England). 30: 3125-7. PMID 25075113 DOI: 10.1093/Bioinformatics/Btu505 |
0.407 |
|
| 2014 |
Doi Y, Hazen TH, Boitano M, Tsai YC, Clark TA, Korlach J, Rasko DA. Whole-genome assembly of Klebsiella pneumoniae coproducing NDM-1 and OXA-232 carbapenemases using single-molecule, real-time sequencing. Antimicrobial Agents and Chemotherapy. 58: 5947-53. PMID 25070096 DOI: 10.1128/Aac.03180-14 |
0.457 |
|
| 2014 |
Franz E, Delaquis P, Morabito S, Beutin L, Gobius K, Rasko DA, Bono J, French N, Osek J, Lindstedt BA, Muniesa M, Manning S, LeJeune J, Callaway T, Beatson S, et al. Exploiting the explosion of information associated with whole genome sequencing to tackle Shiga toxin-producing Escherichia coli (STEC) in global food production systems. International Journal of Food Microbiology. 187: 57-72. PMID 25051454 DOI: 10.1016/J.Ijfoodmicro.2014.07.002 |
0.363 |
|
| 2014 |
Dugan VG, Emrich SJ, Giraldo-Calderón GI, Harb OS, Newman RM, Pickett BE, Schriml LM, Stockwell TB, Stoeckert CJ, Sullivan DE, Singh I, Ward DV, Yao A, Zheng J, Barrett T, ... ... Rasko D, et al. Standardized metadata for human pathogen/vector genomic sequences. Plos One. 9: e99979. PMID 24936976 DOI: 10.1371/Journal.Pone.0099979 |
0.43 |
|
| 2014 |
Hazen TH, Humphrys MS, Ochieng JB, Parsons M, Bopp CA, O'Reilly CE, Mintz E, Rasko DA. Draft Genome Sequences of Nine Enteropathogenic Escherichia coli Strains from Kenya. Genome Announcements. 2. PMID 24926061 DOI: 10.1128/Genomea.00582-14 |
0.506 |
|
| 2014 |
Hazen TH, Zhao L, Boutin MA, Stancil A, Robinson G, Harris AD, Rasko DA, Johnson JK. Comparative genomics of an IncA/C multidrug resistance plasmid from Escherichia coli and Klebsiella isolates from intensive care unit patients and the utility of whole-genome sequencing in health care settings. Antimicrobial Agents and Chemotherapy. 58: 4814-25. PMID 24914121 DOI: 10.1128/Aac.02573-14 |
0.465 |
|
| 2014 |
Jacobs AC, Thompson MG, Black CC, Kessler JL, Clark LP, McQueary CN, Gancz HY, Corey BW, Moon JK, Si Y, Owen MT, Hallock JD, Kwak YI, Summers A, Li CZ, ... Rasko DA, et al. AB5075, a Highly Virulent Isolate of Acinetobacter baumannii, as a Model Strain for the Evaluation of Pathogenesis and Antimicrobial Treatments. Mbio. 5: e01076-14. PMID 24865555 DOI: 10.1128/Mbio.01076-14 |
0.426 |
|
| 2014 |
Sahl JW, Caporaso JG, Rasko DA, Keim P. The large-scale blast score ratio (LS-BSR) pipeline: a method to rapidly compare genetic content between bacterial genomes. Peerj. 2: e332. PMID 24749011 DOI: 10.7717/Peerj.332 |
0.443 |
|
| 2014 |
Mohawk KL, Poly F, Sahl JW, Rasko DA, Guerry P. High frequency, spontaneous motA mutations in Campylobacter jejuni strain 81-176 Plos One. 9. PMID 24558375 DOI: 10.1371/Journal.Pone.0088043 |
0.388 |
|
| 2014 |
Luo Q, Kumar P, Vickers TJ, Sheikh A, Lewis WG, Rasko DA, Sistrunk J, Fleckenstein JM. Enterotoxigenic Escherichia coli secretes a highly conserved mucin-degrading metalloprotease to effectively engage intestinal epithelial cells. Infection and Immunity. 82: 509-21. PMID 24478067 DOI: 10.1128/Iai.01106-13 |
0.406 |
|
| 2014 |
Levine JA, Hansen AM, Michalski JM, Hazen TH, Rasko DA, Kaper JB. H-NST induces LEE expression and the formation of attaching and effacing lesions in enterohemorrhagic Escherichia coli. Plos One. 9: e86618. PMID 24466172 DOI: 10.1371/Journal.Pone.0086618 |
0.382 |
|
| 2014 |
Sanjar F, Hazen TH, Shah SM, Koenig SS, Agrawal S, Daugherty S, Sadzewicz L, Tallon LJ, Mammel MK, Feng P, Soderlund R, Tarr PI, Debroy C, Dudley EG, Cebula TA, ... ... Rasko DA, et al. Genome Sequence of Escherichia coli O157:H7 Strain 2886-75, Associated with the First Reported Case of Human Infection in the United States. Genome Announcements. 2. PMID 24407635 DOI: 10.1128/Genomea.01120-13 |
0.474 |
|
| 2014 |
Hazen TH, Zhao L, Sahl JW, Robinson G, Harris AD, Rasko DA, Johnson JK. Characterization of Klebsiella sp. strain 10982, a colonizer of humans that contains novel antibiotic resistance alleles and exhibits genetic similarities to plant and clinical Klebsiella isolates. Antimicrobial Agents and Chemotherapy. 58: 1879-88. PMID 24395222 DOI: 10.1128/Aac.01605-13 |
0.47 |
|
| 2014 |
Thaipisuttikul I, Hittle LE, Chandra R, Zangari D, Dixon CL, Garrett TA, Rasko DA, Dasgupta N, Moskowitz SM, Malmström L, Goodlett DR, Miller SI, Bishop RE, Ernst RK. A divergent Pseudomonas aeruginosa palmitoyltransferase essential for cystic fibrosis-specific lipid A. Molecular Microbiology. 91: 158-74. PMID 24283944 DOI: 10.1111/Mmi.12451 |
0.324 |
|
| 2014 |
Florian Fricke W, Rasko DA. Bacterial genome sequencing in the clinic: Bioinformatic challenges and solutions Nature Reviews Genetics. 15: 49-55. PMID 24281148 DOI: 10.1038/Nrg3624 |
0.365 |
|
| 2013 |
Nisa S, Hazen TH, Assatourian L, Nougayrède JP, Rasko DA, Donnenberg MS. In vitro evolution of an archetypal enteropathogenic Escherichia coli strain. Journal of Bacteriology. 195: 4476-83. PMID 23913321 DOI: 10.1128/Jb.00704-13 |
0.434 |
|
| 2013 |
Fleckenstein JM, Munson GM, Rasko DA. Enterotoxigenic Escherichia coli: Orchestrated host engagement Gut Microbes. 4: 392-396. PMID 23892244 DOI: 10.4161/Gmic.25861 |
0.417 |
|
| 2013 |
Hazen TH, Sahl JW, Fraser CM, Donnenberg MS, Scheutz F, Rasko DA. Draft Genome Sequences of Three O157 Enteropathogenic Escherichia coli Isolates. Genome Announcements. 1. PMID 23868135 DOI: 10.1128/Genomea.00516-13 |
0.457 |
|
| 2013 |
Hazen TH, Sahl JW, Fraser CM, Donnenberg MS, Scheutz F, Rasko DA. Refining the pathovar paradigm via phylogenomics of the attaching and effacing Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 110: 12810-5. PMID 23858472 DOI: 10.1073/Pnas.1306836110 |
0.513 |
|
| 2013 |
Subashchandrabose S, Hazen TH, Rasko DA, Mobley HL. Draft genome sequences of five recent human uropathogenic Escherichia coli isolates. Pathogens and Disease. PMID 23821517 DOI: 10.1111/2049-632X.12059 |
0.538 |
|
| 2013 |
Seekatz AM, Panda A, Rasko DA, Toapanta FR, Eloe-Fadrosh EA, Khan AQ, Liu Z, Shipley ST, Detolla LJ, Sztein MB, Fraser CM. Differential response of the cynomolgus macaque gut microbiota to Shigella infection. Plos One. 8: e64212. PMID 23755118 DOI: 10.1371/Journal.Pone.0064212 |
0.337 |
|
| 2013 |
Morris CR, Grassel CL, Redman JC, Sahl JW, Barry EM, Rasko DA. Characterization of intracellular growth regulator icgR by utilizing transcriptomics to identify mediators of pathogenesis in Shigella flexneri. Infection and Immunity. 81: 3068-76. PMID 23753632 DOI: 10.1128/Iai.00537-13 |
0.398 |
|
| 2013 |
Harro JM, Daugherty S, Bruno VM, Jabra-Rizk MA, Rasko DA, Shirtliff ME. Draft Genome Sequence of the Methicillin-Resistant Staphylococcus aureus Isolate MRSA-M2. Genome Announcements. 1. PMID 23405318 DOI: 10.1128/Genomea.00037-12 |
0.445 |
|
| 2013 |
Rasko DA. Clostridium difficile healthcare-associated epidemics Nature Genetics. 45: 6-7. PMID 23268129 DOI: 10.1038/Ng.2499 |
0.395 |
|
| 2013 |
Kansal R, Rasko DA, Sahl JW, Munson GP, Roy K, Luo Q, Sheikh A, Kuhne KJ, Fleckenstein JM. Transcriptional modulation of enterotoxigenic Escherichia coli virulence genes in response to epithelial cell interactions. Infection and Immunity. 81: 259-70. PMID 23115039 DOI: 10.1128/Iai.00919-12 |
0.408 |
|
| 2013 |
Subashchandrabose S, Brumbaugh A, Himpsl S, Rasko D, Mobley H. 1151 TRANSCRIPTOME OF UROPATHOGENIC
ESCHERICHIA COLI
DURING HUMAN URINARY TRACT INFECTIONS Journal of Urology. 189. DOI: 10.1016/J.Juro.2013.02.786 |
0.334 |
|
| 2013 |
Sahl JW, Morris CR, Rasko DA. Comparative genomics of pathogenic Escherichia coli Escherichia Coli: Pathotypes and Principles of Pathogenesis: Second Edition. 21-43. DOI: 10.1016/B978-0-12-397048-0.00002-4 |
0.408 |
|
| 2012 |
Steyert SR, Sahl JW, Fraser CM, Teel LD, Scheutz F, Rasko DA. Comparative genomics and stx phage characterization of LEE-negative Shiga toxin-producing Escherichia coli. Frontiers in Cellular and Infection Microbiology. 2: 133. PMID 23162798 DOI: 10.3389/Fcimb.2012.00133 |
0.531 |
|
| 2012 |
Koren S, Schatz MC, Walenz BP, Martin J, Howard JT, Ganapathy G, Wang Z, Rasko DA, McCombie WR, Jarvis ED, Adam M Phillippy. Hybrid error correction and de novo assembly of single-molecule sequencing reads. Nature Biotechnology. 30: 693-700. PMID 22750884 DOI: 10.1038/Nbt.2280 |
0.343 |
|
| 2012 |
Li Y, Powell DA, Shaffer SA, Rasko DA, Pelletier MR, Leszyk JD, Scott AJ, Masoudi A, Goodlett DR, Wang X, Raetz CR, Ernst RK. LPS remodeling is an evolved survival strategy for bacteria. Proceedings of the National Academy of Sciences of the United States of America. 109: 8716-21. PMID 22586119 DOI: 10.1073/Pnas.1202908109 |
0.328 |
|
| 2012 |
Hazen TH, Robinson GL, Harris AD, Rasko DA, Johnson JK. Genome sequence of Klebsiella oxytoca 11492-1, a nosocomial isolate possessing a FOX-5 AmpC β-lactamase. Journal of Bacteriology. 194: 3028-9. PMID 22582383 DOI: 10.1128/Jb.00391-12 |
0.451 |
|
| 2012 |
Hazen TH, Sahl JW, Redman JC, Morris CR, Daugherty SC, Chibucos MC, Sengamalay NA, Fraser-Liggett CM, Steinsland H, Whittam TS, Whittam B, Manning SD, Rasko DA. Draft genome sequences of the diarrheagenic Escherichia coli collection. Journal of Bacteriology. 194: 3026-7. PMID 22582382 DOI: 10.1128/Jb.00426-12 |
0.476 |
|
| 2012 |
Sahl JW, Matalka MN, Rasko DA. Phylomark, a tool to identify conserved phylogenetic markers from whole-genome alignments Applied and Environmental Microbiology. 78: 4884-4892. PMID 22582056 DOI: 10.1128/Aem.00929-12 |
0.464 |
|
| 2012 |
Faherty CS, Redman JC, Rasko DA, Barry EM, Nataro JP. Shigella flexneri effectors OspE1 and OspE2 mediate induced adherence to the colonic epithelium following bile salts exposure. Molecular Microbiology. 85: 107-21. PMID 22571618 DOI: 10.1111/J.1365-2958.2012.08092.X |
0.38 |
|
| 2012 |
Earl AM, Eppinger M, Fricke WF, Rosovitz MJ, Rasko DA, Daugherty S, Losick R, Kolter R, Ravel J. Whole-genome sequences of Bacillus subtilis and close relatives. Journal of Bacteriology. 194: 2378-9. PMID 22493193 DOI: 10.1128/Jb.05675-11 |
0.39 |
|
| 2012 |
Gyllborg MC, Sahl JW, Cronin DC, Rasko DA, Mandel MJ. Draft genome sequence of Vibrio fischeri SR5, a strain isolated from the light organ of the Mediterranean squid Sepiola robusta. Journal of Bacteriology. 194: 1639. PMID 22374964 DOI: 10.1128/Jb.06825-11 |
0.448 |
|
| 2012 |
Zurawski DV, Thompson MG, McQueary CN, Matalka MN, Sahl JW, Craft DW, Rasko DA. Genome sequences of four divergent multidrug-resistant acinetobacter baumannii strains isolated from patients with sepsis or osteomyelitis Journal of Bacteriology. 194: 1619-1620. PMID 22374953 DOI: 10.1128/Jb.06749-11 |
0.449 |
|
| 2012 |
Sahl JW, Rasko DA. Analysis of global transcriptional profiles of enterotoxigenic Escherichia coli isolate E24377A Infection and Immunity. 80: 1232-1242. PMID 22215741 DOI: 10.1128/Iai.06138-11 |
0.449 |
|
| 2012 |
Boisen N, Scheutz F, Rasko DA, Redman JC, Persson S, Simon J, Kotloff KL, Levine MM, Sow S, Tamboura B, Toure A, Malle D, Panchalingam S, Krogfelt KA, Nataro JP. Genomic characterization of enteroaggregative Escherichia coli from children in Mali. The Journal of Infectious Diseases. 205: 431-44. PMID 22184729 DOI: 10.1093/Infdis/Jir757 |
0.451 |
|
| 2011 |
Kendall MM, Gruber CC, Rasko DA, Hughes DT, Sperandio V. Hfq virulence regulation in enterohemorrhagic Escherichia coli O157:H7 strain 86-24. Journal of Bacteriology. 193: 6843-51. PMID 21984790 DOI: 10.1128/Jb.06141-11 |
0.435 |
|
| 2011 |
Rasko DA, Webster DR, Sahl JW, Bashir A, Boisen N, Scheutz F, Paxinos EE, Sebra R, Chin CS, Iliopoulos D, Klammer A, Peluso P, Lee L, Kislyuk AO, Bullard J, et al. Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany. The New England Journal of Medicine. 365: 709-17. PMID 21793740 DOI: 10.1056/Nejmoa1106920 |
0.4 |
|
| 2011 |
Sahl JW, Johnson JK, Harris AD, Phillippy AM, Hsiao WW, Thom KA, Rasko DA. Genomic comparison of multi-drug resistant invasive and colonizing Acinetobacter baumannii isolated from diverse human body sites reveals genomic plasticity. Bmc Genomics. 12: 291. PMID 21639920 DOI: 10.1186/1471-2164-12-291 |
0.443 |
|
| 2011 |
Papazisi L, Rasko DA, Ratnayake S, Bock GR, Remortel BG, Appalla L, Liu J, Dracheva T, Braisted JC, Shallom S, Jarrahi B, Snesrud E, Ahn S, Sun Q, Rilstone J, et al. Investigating the genome diversity of B. cereus and evolutionary aspects of B. anthracis emergence. Genomics. 98: 26-39. PMID 21447378 DOI: 10.1016/J.Ygeno.2011.03.008 |
0.482 |
|
| 2011 |
Rasko DA, Worsham PL, Abshire TG, Stanley ST, Bannan JD, Wilson MR, Langham RJ, Decker RS, Jiang L, Read TD, Phillippy AM, Salzberg SL, Pop M, Van Ert MN, Kenefic LJ, et al. Bacillus anthracis comparative genome analysis in support of the Amerithrax investigation. Proceedings of the National Academy of Sciences of the United States of America. 108: 5027-32. PMID 21383169 DOI: 10.1073/Pnas.1016657108 |
0.458 |
|
| 2011 |
Sahl JW, Lloyd AL, Redman JC, Cebula TA, Wood DP, Mobley HL, Rasko DA. Genomic characterization of asymptomatic Escherichia coli isolated from the neobladder. Microbiology (Reading, England). 157: 1088-102. PMID 21252277 DOI: 10.1099/Mic.0.043018-0 |
0.5 |
|
| 2011 |
Steyert SR, Rasko DA, Kaper JB. Functional and phylogenetic analysis of ureD in Shiga toxin-producing Escherichia coli. Journal of Bacteriology. 193: 875-86. PMID 21148732 DOI: 10.1128/Jb.00922-10 |
0.452 |
|
| 2011 |
Sahl JW, Steinsland H, Redman JC, Angiuoli SV, Nataro JP, Sommerfelt H, Rasko DA. A comparative genomic analysis of diverse clonal types of enterotoxigenic Escherichia coli reveals pathovar-specific conservation. Infection and Immunity. 79: 950-60. PMID 21078854 DOI: 10.1128/Iai.00932-10 |
0.488 |
|
| 2010 |
Hagan EC, Lloyd AL, Rasko DA, Faerber GJ, Mobley HL. Escherichia coli global gene expression in urine from women with urinary tract infection. Plos Pathogens. 6: e1001187. PMID 21085611 DOI: 10.1371/Journal.Ppat.1001187 |
0.426 |
|
| 2010 |
Thom KA, Hsiao WWL, Harris AD, Stine OC, Rasko DA, Johnson JK. Patients with Acinetobacter baumannii bloodstream infections are colonized in the gastrointestinal tract with identical strains American Journal of Infection Control. 38: 751-753. PMID 20570393 DOI: 10.1016/J.Ajic.2010.03.005 |
0.379 |
|
| 2010 |
Hughes DT, Terekhova DA, Liou L, Hovde CJ, Sahl JW, Patankar AV, Gonzalez JE, Edrington TS, Rasko DA, Sperandio V. Chemical sensing in mammalian host-bacterial commensal associations. Proceedings of the National Academy of Sciences of the United States of America. 107: 9831-6. PMID 20457895 DOI: 10.1073/Pnas.1002551107 |
0.378 |
|
| 2010 |
Kendall MM, Rasko DA, Sperandio V. The LysR-type regulator QseA regulates both characterized and putative virulence genes in enterohaemorrhagic Escherichia coli O157:H7. Molecular Microbiology. 76: 1306-21. PMID 20444105 DOI: 10.1111/J.1365-2958.2010.07174.X |
0.386 |
|
| 2010 |
Pearson MM, Rasko DA, Smith SN, Mobley HL. Transcriptome of swarming Proteus mirabilis. Infection and Immunity. 78: 2834-45. PMID 20368347 DOI: 10.1128/Iai.01222-09 |
0.329 |
|
| 2010 |
Chaudhuri RR, Sebaihia M, Hobman JL, Webber MA, Leyton DL, Goldberg MD, Cunningham AF, Scott-Tucker A, Ferguson PR, Thomas CM, Frankel G, Tang CM, Dudley EG, Roberts IS, Rasko DA, et al. Complete genome sequence and comparative metabolic profiling of the prototypical enteroaggregative Escherichia coli strain 042. Plos One. 5: e8801. PMID 20098708 DOI: 10.1371/Journal.Pone.0008801 |
0.459 |
|
| 2010 |
Rasko DA, Sperandio V. Anti-virulence strategies to combat bacteria-mediated disease Nature Reviews Drug Discovery. 9: 117-128. PMID 20081869 DOI: 10.1038/Nrd3013 |
0.361 |
|
| 2010 |
Reading NC, Rasko D, Torres AG, Sperandio V. A transcriptome study of the QseEF twocomponent system and the QseG membrane protein in enterohaemorrhagic Escherichia coli 0157:H7 Microbiology. 156: 1167-1175. PMID 20056703 DOI: 10.1099/Mic.0.033027-0 |
0.363 |
|
| 2010 |
Fleckenstein JM, Hardwidge PR, Munson GP, Rasko DA, Sommerfelt H, Steinsland H. Molecular mechanisms of enterotoxigenic Escherichia coli infection Microbes and Infection. 12: 89-98. PMID 19883790 DOI: 10.1016/J.Micinf.2009.10.002 |
0.4 |
|
| 2010 |
Calderon VE, Chang Q, McDermott M, Lytle MB, McKee G, Rodriguez K, Rasko DA, Sperandio V, Torres AG. Outbreak caused by cad-negative shiga toxin-producing escherichia coli O111, oklahoma Foodborne Pathogens and Disease. 7: 107-109. PMID 19785536 DOI: 10.1089/Fpd.2009.0370 |
0.398 |
|
| 2009 |
Fricke WF, Rasko DA, Ravel J. The role of genomics in the identification, prediction, and prevention of biological threats Plos Biology. 7. PMID 19855827 DOI: 10.1371/Journal.Pbio.1000217 |
0.354 |
|
| 2009 |
Hughes DT, Clarke MB, Yamamoto K, Rasko DA, Sperandio V. The QseC adrenergic signaling cascade in enterohemorrhagic E. coli (EHEC) Plos Pathogens. 5. PMID 19696934 DOI: 10.1371/Journal.Ppat.1000553 |
0.32 |
|
| 2009 |
Fricke WF, McDermott PF, Mammel MK, Zhao S, Johnson TJ, Rasko DA, Fedorka-Cray PJ, Pedroso A, Whichard JM, Leclerc JE, White DG, Cebula TA, Ravel J. Antimicrobial resistance-conferring plasmids with similarity to virulence plasmids from avian pathogenic Escherichia coli strains in Salmonella enterica serovar Kentucky isolates from poultry. Applied and Environmental Microbiology. 75: 5963-71. PMID 19648374 DOI: 10.1128/Aem.00786-09 |
0.44 |
|
| 2009 |
Buckles EL, Wang X, Lane MC, Lockatell CV, Johnson DE, Rasko DA, Mobley HL, Donnenberg MS. Role of the K2 capsule in Escherichia coli urinary tract infection and serum resistance. The Journal of Infectious Diseases. 199: 1689-97. PMID 19432551 DOI: 10.1086/598524 |
0.331 |
|
| 2009 |
Reading NC, Rasko DA, Torres AG, Sperandio V. The two-component system QseEF and the membrane protein QseG link adrenergic and stress sensing to bacterial pathogenesis Proceedings of the National Academy of Sciences of the United States of America. 106: 5889-5894. PMID 19289831 DOI: 10.1073/Pnas.0811409106 |
0.36 |
|
| 2009 |
Rasko DA, Sperandio V. Novel approaches to bacterial infection therapy by interfering with cell-to-cell signaling Current Protocols in Microbiology. PMID 19235150 DOI: 10.1002/9780471729259.Mc1703S12 |
0.354 |
|
| 2009 |
Kevany BM, Rasko DA, Thomas MG. Characterization of the complete zwittermicin A biosynthesis gene cluster from Bacillus cereus. Applied and Environmental Microbiology. 75: 1144-55. PMID 19098220 DOI: 10.1128/Aem.02518-08 |
0.344 |
|
| 2009 |
Ravel J, Jiang L, Stanley ST, Wilson MR, Decker RS, Read TD, Worsham P, Keim PS, Salzberg SL, Fraser-Liggett CM, Rasko DA. The complete genome sequence of Bacillus anthracis Ames "Ancestor". Journal of Bacteriology. 191: 445-6. PMID 18952800 DOI: 10.1128/Jb.01347-08 |
0.47 |
|
| 2008 |
Vazquez-Juarez RC, Kuriakose JA, Rasko DA, Ritchie JM, Kendall MM, Slater TM, Sinha M, Luxon BA, Popov VL, Waldor MK, Sperandio V, Torres AG. CadA negatively regulates Escherichia coli O157:H7 adherence and intestinal colonization. Infection and Immunity. 76: 5072-81. PMID 18794292 DOI: 10.1128/Iai.00677-08 |
0.427 |
|
| 2008 |
Rasko DA, Moreira CG, Li de R, Reading NC, Ritchie JM, Waldor MK, Williams N, Taussig R, Wei S, Roth M, Hughes DT, Huntley JF, Fina MW, Falck JR, Sperandio V. Targeting QseC signaling and virulence for antibiotic development. Science (New York, N.Y.). 321: 1078-80. PMID 18719281 DOI: 10.1126/Science.1160354 |
0.343 |
|
| 2008 |
Rasko DA, Rosovitz MJ, Myers GS, Mongodin EF, Fricke WF, Gajer P, Crabtree J, Sebaihia M, Thomson NR, Chaudhuri R, Henderson IR, Sperandio V, Ravel J. The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates. Journal of Bacteriology. 190: 6881-93. PMID 18676672 DOI: 10.1128/Jb.00619-08 |
0.507 |
|
| 2008 |
Kendall MM, Rasko DA, Sperandio V. Global effects of the cell-to-cell signaling molecules autoinducer-2, autoinducer-3, and epinephrine in a luxS mutant of enterohemorrhagic Escherichia coli (Infection and Immunity (2007) 75, 10, (4875-4884)) Infection and Immunity. 76: 1319. DOI: 10.1128/Iai.01566-07 |
0.305 |
|
| 2007 |
Eppinger M, Rosovitz MJ, Fricke WF, Rasko DA, Kokorina G, Fayolle C, Lindler LE, Carniel E, Ravel J. The complete genome sequence of Yersinia pseudotuberculosis IP31758, the causative agent of Far East scarlet-like fever. Plos Genetics. 3: e142. PMID 17784789 DOI: 10.1371/Journal.Pgen.0030142 |
0.468 |
|
| 2007 |
Kendall MM, Rasko DA, Sperandio V. Global effects of the cell-to-cell signaling molecules autoinducer-2, autoinducer-3, and epinephrine in a luxS mutant of enterohemorrhagic Escherichia coli. Infection and Immunity. 75: 4875-84. PMID 17635870 DOI: 10.1128/Iai.00550-07 |
0.4 |
|
| 2007 |
Wang W, Reitzer L, Rasko DA, Pearson MM, Blick RJ, Laurence C, Hansen EJ. Metabolic analysis of Moraxella catarrhalis and the effect of selected in vitro growth conditions on global gene expression. Infection and Immunity. 75: 4959-71. PMID 17620351 DOI: 10.1128/Iai.00073-07 |
0.363 |
|
| 2007 |
Messina AF, Katz-Gaynor K, Barton T, Ahmad N, Ghaffar F, Rasko D, McCracken GH. Impact of the pneumococcal conjugate vaccine on serotype distribution and antimicrobial resistance of invasive Streptococcus pneumoniae isolates in Dallas, TX, children from 1999 through 2005. The Pediatric Infectious Disease Journal. 26: 461-7. PMID 17529859 DOI: 10.1097/Inf.0B013E31805Cdbeb |
0.355 |
|
| 2007 |
Russell RM, Sharp FC, Rasko DA, Sperandio V. QseA and GrlR/GrlA regulation of the locus of enterocyte effacement genes in enterohemorrhagic Escherichia coli Journal of Bacteriology. 189: 5387-5392. PMID 17496094 DOI: 10.1128/Jb.00553-07 |
0.335 |
|
| 2007 |
Rasko DA, Esteban CD, Sperandio V. Development of novel plasmid vectors and a promoter trap system in Francisella tularensis compatible with the pFLN10 based plasmids Plasmid. 58: 159-166. PMID 17459476 DOI: 10.1016/J.Plasmid.2007.03.002 |
0.306 |
|
| 2007 |
Welch TJ, Fricke WF, McDermott PF, White DG, Rosso ML, Rasko DA, Mammel MK, Eppinger M, Rosovitz MJ, Wagner D, Rahalison L, Leclerc JE, Hinshaw JM, Lindler LE, Cebula TA, et al. Multiple antimicrobial resistance in plague: an emerging public health risk. Plos One. 2: e309. PMID 17375195 DOI: 10.1371/Journal.Pone.0000309 |
0.433 |
|
| 2007 |
Lloyd AL, Rasko DA, Mobley HL. Defining genomic islands and uropathogen-specific genes in uropathogenic Escherichia coli. Journal of Bacteriology. 189: 3532-46. PMID 17351047 DOI: 10.1128/Jb.01744-06 |
0.508 |
|
| 2007 |
Rasko DA, Rosovitz MJ, Økstad OA, Fouts DE, Jiang L, Cer RZ, Kolstø AB, Gill SR, Ravel J. Complete sequence analysis of novel plasmids from emetic and periodontal Bacillus cereus isolates reveals a common evolutionary history among the B. cereus-group plasmids, including Bacillus anthracis pXO1. Journal of Bacteriology. 189: 52-64. PMID 17041058 DOI: 10.1128/Jb.01313-06 |
0.434 |
|
| 2006 |
Myers GS, Rasko DA, Cheung JK, Ravel J, Seshadri R, DeBoy RT, Ren Q, Varga J, Awad MM, Brinkac LM, Daugherty SC, Haft DH, Dodson RJ, Madupu R, Nelson WC, et al. Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens. Genome Research. 16: 1031-40. PMID 16825665 DOI: 10.1101/Gr.5238106 |
0.492 |
|
| 2006 |
Fouts DE, Rasko DA, Cer RZ, Jiang L, Fedorova NB, Shvartsbeyn A, Vamathevan JJ, Tallon L, Althoff R, Arbogast TS, Fadrosh DW, Read TD, Gill SR. Sequencing Bacillus anthracis typing phages gamma and cherry reveals a common ancestry Journal of Bacteriology. 188: 3402-3408. PMID 16621835 DOI: 10.1128/Jb.188.9.3402-3408.2006 |
0.39 |
|
| 2005 |
Rasko DA, Mongodin EF. The first decade of microbial genomics: What have we learned and where are we going next? Genome Biology. 6. PMID 16168094 DOI: 10.1186/Gb-2005-6-9-341 |
0.371 |
|
| 2005 |
Schmidt EW, Nelson JT, Rasko DA, Sudek S, Eisen JA, Haygood MG, Ravel J. Patellamide A and C biosynthesis by a microcin-like pathway in Prochloron didemni, the cyanobacterial symbiont of Lissoclinum patella. Proceedings of the National Academy of Sciences of the United States of America. 102: 7315-20. PMID 15883371 DOI: 10.1073/Pnas.0501424102 |
0.339 |
|
| 2005 |
Rasko DA, Altherr MR, Han CS, Ravel J. Genomics of the Bacillus cereus group of organisms Fems Microbiology Reviews. 29: 303-329. PMID 15808746 DOI: 10.1016/J.Femsre.2004.12.005 |
0.407 |
|
| 2005 |
Fouts DE, Mongodin EF, Mandrell RE, Miller WG, Rasko DA, Ravel J, Brinkac LM, DeBoy RT, Parker CT, Daugherty SC, Dodson RJ, Durkin AS, Madupu R, Sullivan SA, Shetty JU, et al. Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species. Plos Biology. 3: e15. PMID 15660156 DOI: 10.1371/Journal.Pbio.0030015 |
0.462 |
|
| 2005 |
Rasko DA, Myers GS, Ravel J. Visualization of comparative genomic analyses by BLAST score ratio. Bmc Bioinformatics. 6: 2. PMID 15634352 DOI: 10.1186/1471-2105-6-2 |
0.395 |
|
| 2005 |
Eppinger M, Rosovitz MJ, Fricke WF, Rasko D, Kokorina G, Fayolle C, Lindler LE, Carniel E, Ravel J. Genome Sequence of Y. pseudotuberculosis IP31758, the Causative Agent of Far East Scarlet Like Fever: Linking Genomic Plasticity to Pathogenicity Plos Genetics. DOI: 10.1371/Journal.Pgen.0030142.Eor |
0.418 |
|
| 2004 |
Moran MA, Buchan A, González JM, Heidelberg JF, Whitman WB, Kiene RP, Henriksen JR, King GM, Belas R, Fuqua C, Brinkac L, Lewis M, Johri S, Weaver B, Pai G, ... ... Rasko DA, et al. Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment. Nature. 432: 910-3. PMID 15602564 DOI: 10.1038/Nature03170 |
0.403 |
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| 2004 |
Hoffmaster AR, Ravel J, Rasko DA, Chapman GD, Chute MD, Marston CK, De BK, Sacchi CT, Fitzgerald C, Mayer LW, Maiden MCJ, Priest FG, Barker M, Jiang L, Cer RZ, et al. Identification of anthrax toxin genes in a bacillus cereus associated with an illness resembling inhalation anthrax Proceedings of the National Academy of Sciences of the United States of America. 101: 8449-8454. PMID 15155910 DOI: 10.1073/Pnas.0402414101 |
0.48 |
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| 2004 |
Nelson KE, Fouts DE, Mongodin EF, Ravel J, DeBoy RT, Kolonay JF, Rasko DA, Angiuoli SV, Gill SR, Paulsen IT, Peterson J, White O, Nelson WC, Nierman W, Beanan MJ, et al. Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species. Nucleic Acids Research. 32: 2386-95. PMID 15115801 DOI: 10.1093/Nar/Gkh562 |
0.473 |
|
| 2004 |
Rasko DA, Ravel J, Økstad OA, Helgason E, Cer RZ, Jiang L, Shores KA, Fouts DE, Tourasse NJ, Angiuoli SV, Kolonay J, Nelson WC, Kolstø AB, Fraser CM, Read TD. The genome sequence of Bacillus cereus ATCC 10987 reveals metabolic adaptations and a large plasmid related to Bacillus anthracis pXO1. Nucleic Acids Research. 32: 977-88. PMID 14960714 DOI: 10.1093/Nar/Gkh258 |
0.412 |
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| 2004 |
Heimer SR, Rasko DA, Lockatell CV, Johnson DE, Mobley HL. Autotransporter genes pic and tsh are associated with Escherichia coli strains that cause acute pyelonephritis and are expressed during urinary tract infection. Infection and Immunity. 72: 593-7. PMID 14688142 DOI: 10.1128/Iai.72.1.593-597.2004 |
0.436 |
|
| 2004 |
Liu H, Bergman NH, Thomason B, Shallom S, Hazen A, Crossno J, Rasko DA, Ravel J, Read TD, Peterson SN, Yates J, Hanna PC. Formation and composition of the Bacillus anthracis endospore. Journal of Bacteriology. 186: 164-78. PMID 14679236 DOI: 10.1128/Jb.186.1.164-178.2004 |
0.407 |
|
| 2003 |
Lozniewski A, Haristoy X, Rasko DA, Hatier R, Plénat F, Taylor DE, Angioi-Duprez K. Influence of Lewis antigen expression by Helicobacter pylori on bacterial internalization by gastric epithelial cells. Infection and Immunity. 71: 2902-6. PMID 12704166 DOI: 10.1128/Iai.71.5.2902-2906.2003 |
0.315 |
|
| 2002 |
Welch RA, Burland V, Plunkett G, Redford P, Roesch P, Rasko D, Buckles EL, Liou SR, Boutin A, Hackett J, Stroud D, Mayhew GF, Rose DJ, Zhou S, Schwartz DC, et al. Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 99: 17020-4. PMID 12471157 DOI: 10.1073/Pnas.252529799 |
0.525 |
|
| 2001 |
Rasko DA, Phillips JA, Li X, Mobley HLT. Identification of DNA sequences from a second pathogenicity island of uropathogenic Escherichia coli CFT073: Probes specific for uropathogenic populations Journal of Infectious Diseases. 184: 1041-1049. PMID 11574920 DOI: 10.1086/323602 |
0.459 |
|
| 2001 |
Li X, Rasko DA, Lockatell CV, Johnson DE, Mobley HLT. Repression of bacterial motility by a novel fimbrial gene product Embo Journal. 20: 4854-4862. PMID 11532949 DOI: 10.1093/Emboj/20.17.4854 |
0.374 |
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| 2001 |
Monteiro MA, St Michael F, Rasko DA, Taylor DE, Conlan JW, Chan KH, Logan SM, Appelmelk BJ, Perry MB. Helicobacter pylori from asymptomatic hosts expressing heptoglycan but lacking Lewis O-chains: Lewis blood-group O-chains may play a role in Helicobacter pylori induced pathology. Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. 79: 449-59. PMID 11527214 DOI: 10.1139/O01-035 |
0.303 |
|
| 2000 |
Rasko DA, Wang G, Monteiro MA, Palcic MM, Taylor DE. Synthesis of mono- and di-fucosylated type I Lewis blood group antigens by Helicobacter pylori. European Journal of Biochemistry / Febs. 267: 6059-66. PMID 10998067 DOI: 10.1046/J.1432-1327.2000.01683.X |
0.312 |
|
| 2000 |
Wang G, Ge Z, Rasko DA, Taylor DE. Lewis antigens in Helicobacter pylori: biosynthesis and phase variation. Molecular Microbiology. 36: 1187-96. PMID 10931272 DOI: 10.1046/J.1365-2958.2000.01934.X |
0.333 |
|
| 2000 |
Rasko DA, Wilson TJ, Zopf D, Taylor DE. Lewis antigen expression and stability in Helicobacter pylori isolated from serial gastric biopsies. The Journal of Infectious Diseases. 181: 1089-95. PMID 10720535 DOI: 10.1086/315354 |
0.308 |
|
| 2000 |
Rasko DA, Wang G, Palcic MM, Taylor DE. Cloning and characterization of the alpha(1,3/4) fucosyltransferase of Helicobacter pylori. The Journal of Biological Chemistry. 275: 4988-94. PMID 10671538 DOI: 10.1074/Jbc.275.7.4988 |
0.383 |
|
| 2000 |
Monteiro MA, Appelmelk BJ, Rasko DA, Moran AP, Hynes SO, MacLean LL, Chan KH, Michael FS, Logan SM, O'Rourke J, Lee A, Taylor DE, Perry MB. Lipopolysaccharide structures of Helicobacter pylori genomic strains 26695 and J99, mouse model H. pylori Sydney strain, H. pylori P466 carrying sialyl Lewis X, and H. pylori UA915 expressing Lewis B classification of H. pylori lipopolysaccharides into glycotype families. European Journal of Biochemistry / Febs. 267: 305-20. PMID 10632700 DOI: 10.1046/J.1432-1327.2000.01007.X |
0.38 |
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| 1999 |
Wang G, Rasko DA, Sherburne R, Taylor DE. Molecular genetic basis for the variable expression of Lewis Y antigen in Helicobacter pylori: Analysis of the α(1,2) fucosyltransferase gene Molecular Microbiology. 31: 1265-1274. PMID 10096092 DOI: 10.1046/J.1365-2958.1999.01268.X |
0.409 |
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| 1998 |
Monteiro MA, Chan KH, Rasko DA, Taylor DE, Zheng PY, Appelmelk BJ, Wirth HP, Yang M, Blaser MJ, Hynes SO, Moran AP, Perry MB. Simultaneous expression of type 1 and type 2 Lewis blood group antigens by Helicobacter pylori lipopolysaccharides. Molecular mimicry between h. pylori lipopolysaccharides and human gastric epithelial cell surface glycoforms. The Journal of Biological Chemistry. 273: 11533-43. PMID 9565568 DOI: 10.1074/Jbc.273.19.11533 |
0.312 |
|
| 1998 |
Monteiro MA, Rasko D, Taylor DE, Perry MB. Glucosylated N-acetyllactosamine O-antigen chain in the lipopolysaccharide from Helicobacter pylori strain UA861. Glycobiology. 8: 107-12. PMID 9451019 DOI: 10.1093/Glycob/8.1.107 |
0.308 |
|
| 1997 |
Monteiro MA, Rasko D, Taylor DE, Perry MB. Glucosylated N-acetyllactosamine O-antigen chain in the lipopolysaccharide from Helicobacter Pylori strain UA861 Carbohydrate Polymers. 34: 434-435. DOI: 10.1016/S0144-8617(97)87386-9 |
0.308 |
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