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Russell T. Shinohara, Ph.D. - Publications

Affiliations: 
2012 Johns Hopkins University, Baltimore, MD 
Area:
Biostatistics Biology
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56 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Beer JC, Tustison NJ, Cook PA, Davatzikos C, Sheline YI, Shinohara RT, Linn KA. Longitudinal ComBat:A Method for Harmonizing Longitudinal Multi-scanner Imaging Data. Neuroimage. 117129. PMID 32640273 DOI: 10.1016/J.Neuroimage.2020.117129  0.319
2020 Bakas S, Shukla G, Akbari H, Erus G, Sotiras A, Rathore S, Sako C, Min Ha S, Rozycki M, Shinohara RT, Bilello M, Davatzikos C. Overall survival prediction in glioblastoma patients using structural magnetic resonance imaging (MRI): advanced radiomic features may compensate for lack of advanced MRI modalities. Journal of Medical Imaging (Bellingham, Wash.). 7: 031505. PMID 32566694 DOI: 10.1117/1.Jmi.7.3.031505  0.317
2020 Pines AR, Cieslak M, Larsen B, Baum GL, Cook PA, Adebimpe A, Dávila DG, Elliott MA, Jirsaraie R, Murtha K, Oathes DJ, Piiwaa K, Rosen AFG, Rush S, Shinohara RT, et al. Leveraging multi-shell diffusion for studies of brain development in youth and young adulthood. Developmental Cognitive Neuroscience. 43: 100788. PMID 32510347 DOI: 10.1016/J.Dcn.2020.100788  0.329
2020 Radua J, Vieta E, Shinohara R, Kochunov P, Quidé Y, Green M, Weickert C, Weickert T, Bruggemann J, Kircher T, Nenadic I, Cairns M, Seal M, Schall U, Henskens F, et al. Increased power by harmonizing structural MRI site differences with the ComBat batch adjustment method in ENIGMA. Neuroimage. 116956. PMID 32470572 DOI: 10.1016/J.Neuroimage.2020.116956  0.336
2020 Valcarcel AM, Muschelli J, Pham DL, Martin ML, Yushkevich P, Brandstadter R, Patterson KR, Schindler MK, Calabresi PA, Bakshi R, Shinohara RT. TAPAS: A Thresholding Approach for Probability Map Automatic Segmentation in Multiple Sclerosis. Neuroimage. Clinical. 27: 102256. PMID 32428847 DOI: 10.1016/J.Nicl.2020.102256  0.331
2020 Bagnato F, Gauthier SA, Laule C, Moore GRW, Bove R, Cai Z, Cohen-Adad J, Harrison DM, Klawiter EC, Morrow SA, Öz G, Rooney WD, Smith SA, Calabresi PA, Henry RG, ... ... Shinohara RT, et al. Imaging Mechanisms of Disease Progression in Multiple Sclerosis: Beyond Brain Atrophy. Journal of Neuroimaging : Official Journal of the American Society of Neuroimaging. 30: 251-266. PMID 32418324 DOI: 10.1111/Jon.12700  0.334
2020 Hu M, Crainiceanu C, Schindler MK, Dewey B, Reich DS, Shinohara RT, Eloyan A. Matrix decomposition for modeling lesion development processes in multiple sclerosis. Biostatistics (Oxford, England). PMID 32318692 DOI: 10.1093/Biostatistics/Kxaa016  0.31
2020 Cui Z, Stiso J, Baum GL, Kim JZ, Roalf DR, Betzel RF, Gu S, Lu Z, Xia CH, He X, Ciric R, Oathes DJ, Moore TM, Shinohara RT, Ruparel K, et al. Optimization of energy state transition trajectory supports the development of executive function during youth. Elife. 9. PMID 32216874 DOI: 10.7554/Elife.53060  0.314
2020 Xia CH, Ma Z, Cui Z, Bzdok D, Thirion B, Bassett DS, Satterthwaite TD, Shinohara RT, Witten DM. Multi-scale network regression for brain-phenotype associations. Human Brain Mapping. PMID 32216125 DOI: 10.1002/Hbm.24982  0.323
2020 Cui Z, Li H, Xia CH, Larsen B, Adebimpe A, Baum GL, Cieslak M, Gur RE, Gur RC, Moore TM, Oathes DJ, Alexander-Bloch AF, Raznahan A, Roalf DR, Shinohara RT, et al. Individual Variation in Functional Topography of Association Networks in Youth. Neuron. PMID 32078800 DOI: 10.1016/J.Neuron.2020.01.029  0.33
2020 Hu M, Schindler MK, Dewey BE, Reich DS, Shinohara RT, Eloyan A. Experimental design and sample size considerations in longitudinal magnetic resonance imaging-based biomarker detection for multiple sclerosis. Statistical Methods in Medical Research. 962280220904392. PMID 32070238 DOI: 10.1177/0962280220904392  0.303
2019 Kaczkurkin AN, Moore TM, Sotiras A, Xia CH, Shinohara RT, Satterthwaite TD. Approaches to Defining Common and Dissociable Neurobiological Deficits Associated With Psychopathology in Youth. Biological Psychiatry. PMID 32087950 DOI: 10.1016/J.Biopsych.2019.12.015  0.31
2019 Dworkin JD, Linn KA, Solomon AJ, Satterthwaite TD, Raznahan A, Bakshi R, Shinohara RT. A local group differences test for subject-level multivariate density neuroimaging outcomes. Biostatistics (Oxford, England). PMID 31875881 DOI: 10.1093/Biostatistics/Kxz058  0.322
2019 Pomponio R, Erus G, Habes M, Doshi J, Srinivasan D, Mamourian E, Bashyam V, Nasrallah IM, Satterthwaite TD, Fan Y, Launer LJ, Masters CL, Maruff P, Zhuo C, Völzke H, ... ... Shinohara RT, et al. Harmonization of large MRI datasets for the analysis of brain imaging patterns throughout the lifespan. Neuroimage. 116450. PMID 31821869 DOI: 10.1016/J.Neuroimage.2019.116450  0.362
2019 Shinohara RT, Shou H, Carone M, Schultz R, Tunc B, Parker D, Martin ML, Verma R. Distance-Based Analysis of Variance for Brain Connectivity. Biometrics. PMID 31350904 DOI: 10.1111/Biom.13123  0.314
2019 Vandekar SN, Satterthwaite TD, Xia CH, Adebimpe A, Ruparel K, Gur RC, Gur RE, Shinohara RT. Robust Spatial Extent Inference with a Semiparametric Bootstrap Joint Inference Procedure. Biometrics. PMID 31282994 DOI: 10.1111/Biom.13114  0.313
2019 Kaczkurkin AN, Park SS, Sotiras A, Moore TM, Calkins ME, Cieslak M, Rosen AFG, Ciric R, Xia CH, Cui Z, Sharma A, Wolf DH, Ruparel K, Pine DS, Shinohara RT, et al. Evidence for Dissociable Linkage of Dimensions of Psychopathology to Brain Structure in Youths. The American Journal of Psychiatry. appiajp201918070835. PMID 31230463 DOI: 10.1176/Appi.Ajp.2019.18070835  0.319
2019 Hazra A, Reich BJ, Reich DS, Shinohara RT, Staicu AM. A Spatio-Temporal Model for Longitudinal Image-on-Image Regression. Statistics in Biosciences. 11: 22-46. PMID 31156722 DOI: 10.1007/S12561-017-9206-Z  0.361
2019 Shah P, Bassett DS, Wisse LEM, Detre JA, Stein JM, Yushkevich PA, Shinohara RT, Elliott MA, Das SR, Davis KA. Structural and functional asymmetry of medial temporal subregions in unilateral temporal lobe epilepsy: A 7T MRI study. Human Brain Mapping. PMID 30666753 DOI: 10.1002/Hbm.24530  0.337
2019 Schwartz DL, Tagge I, Powers K, Ahn S, Bakshi R, Calabresi PA, Todd Constable R, Grinstead J, Henry RG, Nair G, Papinutto N, Pelletier D, Shinohara R, Oh J, Reich DS, et al. Multisite reliability and repeatability of an advanced brain MRI protocol. Journal of Magnetic Resonance Imaging : Jmri. PMID 30652391 DOI: 10.1002/Jmri.26652  0.319
2018 Valcarcel AM, Linn KA, Khalid F, Vandekar SN, Tauhid S, Satterthwaite TD, Muschelli J, Martin ML, Bakshi R, Shinohara RT. A dual modeling approach to automatic segmentation of cerebral T2 hyperintensities and T1 black holes in multiple sclerosis. Neuroimage. Clinical. 20: 1211-1221. PMID 30391859 DOI: 10.1016/J.Nicl.2018.10.013  0.316
2018 Dworkin JD, Sati P, Solomon A, Pham DL, Watts R, Martin ML, Ontaneda D, Schindler MK, Reich DS, Shinohara RT. Automated Integration of Multimodal MRI for the Probabilistic Detection of the Central Vein Sign in White Matter Lesions. Ajnr. American Journal of Neuroradiology. PMID 30213803 DOI: 10.3174/Ajnr.A5765  0.319
2018 Xia CH, Ma Z, Ciric R, Gu S, Betzel RF, Kaczkurkin AN, Calkins ME, Cook PA, García de la Garza A, Vandekar SN, Cui Z, Moore TM, Roalf DR, Ruparel K, Wolf DH, ... ... Shinohara RT, et al. Linked dimensions of psychopathology and connectivity in functional brain networks. Nature Communications. 9: 3003. PMID 30068943 DOI: 10.1038/S41467-018-05317-Y  0.32
2018 Yu M, Linn KA, Cook PA, Phillips ML, McInnis M, Fava M, Trivedi MH, Weissman MM, Shinohara RT, Sheline YI. Statistical harmonization corrects site effects in functional connectivity measurements from multi-site fMRI data. Human Brain Mapping. PMID 29962049 DOI: 10.1002/Hbm.24241  0.321
2018 Alexander-Bloch A, Shou H, Liu S, Satterthwaite TD, Glahn DC, Shinohara RT, Vandekar SN, Raznahan A. On testing for spatial correspondence between maps of human brain structure and function. Neuroimage. PMID 29860082 DOI: 10.1016/J.Neuroimage.2018.05.070  0.314
2018 Nassar R, Kaczkurkin AN, Xia CH, Sotiras A, Pehlivanova M, Moore TM, Garcia de La Garza A, Roalf DR, Rosen AFG, Lorch SA, Ruparel K, Shinohara RT, Davatzikos C, Gur RC, Gur RE, et al. Gestational Age is Dimensionally Associated with Structural Brain Network Abnormalities Across Development. Cerebral Cortex (New York, N.Y. : 1991). PMID 29688290 DOI: 10.1093/Cercor/Bhy091  0.325
2018 Valcarcel AM, Linn KA, Vandekar SN, Satterthwaite TD, Muschelli J, Calabresi PA, Pham DL, Martin ML, Shinohara RT. MIMoSA: An Automated Method for Intermodal Segmentation Analysis of Multiple Sclerosis Brain Lesions. Journal of Neuroimaging : Official Journal of the American Society of Neuroimaging. PMID 29516669 DOI: 10.1111/Jon.12506  0.329
2018 Pehlivanova M, Wolf DH, Sotiras A, Kaczkurkin A, Moore TM, Ciric R, Cook PA, de La Garza AG, Rosen A, Ruparel K, Sharma A, Shinohara RT, Roalf DR, Gur RC, Davatzikos C, et al. Diminished Cortical Thickness is Associated with Impulsive Choice in Adolescence. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 29440536 DOI: 10.1523/Jneurosci.2200-17.2018  0.314
2018 Davatzikos C, Rathore S, Bakas S, Pati S, Bergman M, Kalarot R, Sridharan P, Gastounioti A, Jahani N, Cohen E, Akbari H, Tunc B, Doshi J, Parker D, Hsieh M, ... ... Shinohara RT, et al. Cancer imaging phenomics toolkit: quantitative imaging analytics for precision diagnostics and predictive modeling of clinical outcome. Journal of Medical Imaging (Bellingham, Wash.). 5: 011018. PMID 29340286 DOI: 10.1117/1.Jmi.5.1.011018  0.306
2017 Rosen AFG, Roalf DR, Ruparel K, Blake J, Seelaus K, Villa LP, Ciric R, Cook PA, Davatzikos C, Elliott MA, Garcia de La Garza A, Gennatas ED, Quarmley M, Schmitt JE, Shinohara RT, et al. Quantitative assessment of structural image quality. Neuroimage. 169: 407-418. PMID 29278774 DOI: 10.1016/J.Neuroimage.2017.12.059  0.33
2017 Shah P, Bassett DS, Wisse LEM, Detre JA, Stein JM, Yushkevich PA, Shinohara RT, Pluta JB, Valenciano E, Daffner M, Wolk DA, Elliott MA, Litt B, Davis KA, Das SR. Mapping the structural and functional network architecture of the medial temporal lobe using 7T MRI. Human Brain Mapping. PMID 29159960 DOI: 10.1002/Hbm.23887  0.316
2017 Fortin JP, Cullen N, Sheline YI, Taylor WD, Aselcioglu I, Cook PA, Adams P, Cooper C, Fava M, McGrath PJ, McInnis M, Phillips ML, Trivedi MH, Weissman MM, Shinohara RT. Harmonization of cortical thickness measurements across scanners and sites. Neuroimage. PMID 29155184 DOI: 10.1016/J.Neuroimage.2017.11.024  0.338
2017 Oh J, Bakshi R, Calabresi PA, Crainiceanu C, Henry RG, Nair G, Papinutto N, Constable RT, Reich DS, Pelletier D, Rooney W, Schwartz D, Tagge I, Shinohara RT, Simon JH, et al. The NAIMS cooperative pilot project: Design, implementation and future directions. Multiple Sclerosis (Houndmills, Basingstoke, England). 1352458517739990. PMID 29106329 DOI: 10.1177/1352458517739990  0.318
2017 Vandekar SN, Satterthwaite TD, Rosen A, Ciric R, Roalf DR, Ruparel K, Gur RC, Gur RE, Shinohara RT. Faster family-wise error control for neuroimaging with a parametric bootstrap. Biostatistics (Oxford, England). PMID 29059370 DOI: 10.1093/Biostatistics/Kxx051  0.3
2017 Reich BJ, Guinness J, Vandekar SN, Shinohara RT, Staicu AM. Fully Bayesian spectral methods for imaging data. Biometrics. PMID 28960245 DOI: 10.1111/Biom.12782  0.312
2017 Fortin JP, Parker D, Tunç B, Watanabe T, Elliott MA, Ruparel K, Roalf DR, Satterthwaite TD, Gur RC, Gur RE, Schultz RT, Verma R, Shinohara RT. Harmonization of multi-site diffusion tensor imaging data. Neuroimage. PMID 28826946 DOI: 10.1016/J.Neuroimage.2017.08.047  0.317
2017 Shinohara RT, Oh J, Nair G, Calabresi PA, Davatzikos C, Doshi J, Henry RG, Kim G, Linn KA, Papinutto N, Pelletier D, Pham DL, Reich DS, Rooney W, Roy S, et al. Volumetric Analysis from a Harmonized Multisite Brain MRI Study of a Single Subject with Multiple Sclerosis. Ajnr. American Journal of Neuroradiology. PMID 28642263 DOI: 10.3174/Ajnr.A5254  0.352
2017 Baum GL, Ciric R, Roalf DR, Betzel RF, Moore TM, Shinohara RT, Kahn AE, Vandekar SN, Rupert PE, Quarmley M, Cook PA, Elliott MA, Ruparel K, Gur RE, Gur RC, et al. Modular Segregation of Structural Brain Networks Supports the Development of Executive Function in Youth. Current Biology : Cb. PMID 28552358 DOI: 10.1016/J.Cub.2017.04.051  0.308
2016 Suttner LH, Mejia A, Dewey B, Sati P, Reich DS, Shinohara RT. Statistical estimation of white matter microstructure from conventional MRI. Neuroimage. Clinical. 12: 615-623. PMID 27722085 DOI: 10.1016/J.Nicl.2016.09.010  0.337
2016 Zeng K, Erus G, Sotiras A, Shinohara RT, Davatzikos C. Abnormality detection via iterative deformable registration and basis-pursuit decomposition. Ieee Transactions On Medical Imaging. PMID 27046847 DOI: 10.1109/Tmi.2016.2538998  0.325
2016 Fortin JP, Sweeney EM, Muschelli J, Crainiceanu CM, Shinohara RT. Removing inter-subject technical variability in magnetic resonance imaging studies. Neuroimage. PMID 26923370 DOI: 10.1016/J.Neuroimage.2016.02.036  0.343
2016 Sweeney EM, Shinohara RT, Dewey BE, Schindler MK, Muschelli J, Reich DS, Crainiceanu CM, Eloyan A. Relating multi-sequence longitudinal intensity profiles and clinical covariates in incident multiple sclerosis lesions. Neuroimage. Clinical. 10: 1-17. PMID 26693397 DOI: 10.1016/J.Nicl.2015.10.013  0.329
2015 Linn KA, Gaonkar B, Doshi J, Davatzikos C, Shinohara RT. Addressing Confounding in Predictive Models with an Application to Neuroimaging. The International Journal of Biostatistics. PMID 26641972 DOI: 10.1515/Ijb-2015-0030  0.328
2015 Davis KA, Nanga RP, Das S, Chen SH, Hadar PN, Pollard JR, Lucas TH, Shinohara RT, Litt B, Hariharan H, Elliott MA, Detre JA, Reddy R. Glutamate imaging (GluCEST) lateralizes epileptic foci in nonlesional temporal lobe epilepsy. Science Translational Medicine. 7: 309ra161. PMID 26468323 DOI: 10.1126/Scitranslmed.Aaa7095  0.311
2015 Satterthwaite TD, Vandekar SN, Wolf DH, Bassett DS, Ruparel K, Shehzad Z, Craddock RC, Shinohara RT, Moore TM, Gennatas ED, Jackson C, Roalf DR, Milham MP, Calkins ME, Hakonarson H, et al. Connectome-wide network analysis of youth with Psychosis-Spectrum symptoms. Molecular Psychiatry. PMID 26033240 DOI: 10.1038/Mp.2015.66  0.322
2015 Pomann GM, Sweeney EM, Reich DS, Staicu AM, Shinohara RT. Scan-stratified case-control sampling for modeling blood-brain barrier integrity in multiple sclerosis. Statistics in Medicine. 34: 2872-80. PMID 25939401 DOI: 10.1002/Sim.6520  0.368
2015 Vandekar SN, Shinohara RT, Raznahan A, Roalf DR, Ross M, DeLeo N, Ruparel K, Verma R, Wolf DH, Gur RC, Gur RE, Satterthwaite TD. Topologically dissociable patterns of development of the human cerebral cortex. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 35: 599-609. PMID 25589754 DOI: 10.1523/Jneurosci.3628-14.2015  0.308
2014 Shinohara RT, Sweeney EM, Goldsmith J, Shiee N, Mateen FJ, Calabresi PA, Jarso S, Pham DL, Reich DS, Crainiceanu CM. Statistical normalization techniques for magnetic resonance imaging. Neuroimage. Clinical. 6: 9-19. PMID 25379412 DOI: 10.1016/J.Nicl.2014.08.008  0.332
2014 Eloyan A, Shou H, Shinohara RT, Sweeney EM, Nebel MB, Cuzzocreo JL, Calabresi PA, Reich DS, Lindquist MA, Crainiceanu CM. Health effects of lesion localization in multiple sclerosis: spatial registration and confounding adjustment. Plos One. 9: e107263. PMID 25233361 DOI: 10.1371/Journal.Pone.0107263  0.312
2014 Narayan A, Hong K, Streiff M, Shinohara R, Frangakis C, Coresh J, Kim HS. The Impact of Cancer on the Clinical Outcome of Patients After Inferior Vena Cava Filter Placement: A Retrospective Cohort Study. American Journal of Clinical Oncology. PMID 24781342 DOI: 10.1097/Coc.0000000000000062  0.467
2013 Sweeney EM, Shinohara RT, Shiee N, Mateen FJ, Chudgar AA, Cuzzocreo JL, Calabresi PA, Pham DL, Reich DS, Crainiceanu CM. OASIS is Automated Statistical Inference for Segmentation, with applications to multiple sclerosis lesion segmentation in MRI. Neuroimage. Clinical. 2: 402-13. PMID 24179794 DOI: 10.1016/J.Nicl.2013.03.002  0.333
2013 Shinohara RT, Narayan AK, Hong K, Kim HS, Coresh J, Streiff MB, Frangakis CE. Estimating parsimonious models of longitudinal causal effects using regressions on propensity scores. Statistics in Medicine. 32: 3829-37. PMID 23533091 DOI: 10.1002/Sim.5801  0.502
2013 Sweeney EM, Shinohara RT, Shea CD, Reich DS, Crainiceanu CM. Automatic lesion incidence estimation and detection in multiple sclerosis using multisequence longitudinal MRI. Ajnr. American Journal of Neuroradiology. 34: 68-73. PMID 22766673 DOI: 10.3174/Ajnr.A3172  0.319
2012 Momin EN, Adams H, Shinohara RT, Frangakis C, Brem H, Quiñones-Hinojosa A. Postoperative mortality after surgery for brain tumors by patient insurance status in the United States. Archives of Surgery (Chicago, Ill. : 1960). 147: 1017-24. PMID 23165616 DOI: 10.1001/Archsurg.2012.1459  0.539
2012 Shinohara RT, Frangakis CE, Platz E, Tsilidis K. Designs combining instrumental variables with case-control: estimating principal strata causal effects. The International Journal of Biostatistics. 8. PMID 22499727 DOI: 10.2202/1557-4679.1355  0.53
2012 Shinohara RT, Frangakis CE, Lyketsos CG. A broad symmetry criterion for nonparametric validity of parametrically based tests in randomized trials. Biometrics. 68: 85-91. PMID 21762116 DOI: 10.1111/j.1541-0420.2011.01642.x  0.483
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