Mary Poss - Publications

Affiliations: 
Pennsylvania State University, State College, PA, United States 
Area:
Bioinformatics Biology, Biostatistics Biology, Virology Biology

51 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Yang L, Malhotra R, Chikhi R, Elleder D, Kaiser T, Rong J, Medvedev P, Poss M. Recombination marks the evolutionary dynamics of a recently endogenized retrovirus. Molecular Biology and Evolution. PMID 34480565 DOI: 10.1093/molbev/msab252  0.319
2019 Li W, Lin L, Malhotra R, Yang L, Acharya R, Poss M. A computational framework To assess genome-wide distribution Of polymorphic human endogenous retrovirus-K In human populations. Plos Computational Biology. 15: e1006564. PMID 30921327 DOI: 10.1371/Journal.Pcbi.1006564  0.303
2017 Malhotra R, Jha M, Poss M, Acharya R. A random forest classifier for detecting rare variants in NGS data from viral populations. Computational and Structural Biotechnology Journal. 15: 388-395. PMID 28819548 DOI: 10.1016/J.Csbj.2017.07.001  0.34
2016 Schiff SJ, Kiwanuka J, Riggio G, Nguyen L, Mu K, Sproul E, Bazira J, Mwanga-Amumpaire J, Tumusiime D, Nyesigire E, Lwanga N, Bogale KT, Kapur V, Broach JR, Morton SU, ... ... Poss M, et al. Separating Putative Pathogens from Background Contamination with Principal Orthogonal Decomposition: Evidence for Leptospira in the Ugandan Neonatal Septisome. Frontiers in Medicine. 3: 22. PMID 27379237 DOI: 10.3389/Fmed.2016.00022  0.363
2015 Fábryová H, Hron T, Kabíčková H, Poss M, Elleder D. Induction and characterization of a replication competent cervid endogenous gammaretrovirus (CrERV) from mule deer cells. Virology. 485: 96-103. PMID 26218214 DOI: 10.1016/J.Virol.2015.07.003  0.49
2015 Liu Y, Chiaromonte F, Ross H, Malhotra R, Elleder D, Poss M. Error correction and statistical analyses for intra-host comparisons of feline immunodeficiency virus diversity from high-throughput sequencing data. Bmc Bioinformatics. 16: 202. PMID 26123018 DOI: 10.1186/S12859-015-0607-Z  0.518
2014 Chong YL, Kim O, Poss M. Lineage diversification of pigeon paramyxovirus effect re-emergence potential in chickens. Virology. 462: 309-17. PMID 25010480 DOI: 10.1016/J.Virol.2014.06.007  0.448
2014 Kamath PL, Elleder D, Bao L, Cross PC, Powell JH, Poss M. The population history of endogenous retroviruses in mule deer (Odocoileus hemionus). The Journal of Heredity. 105: 173-87. PMID 24336966 DOI: 10.1093/Jhered/Est088  0.444
2013 Prabhakara S, Malhotra R, Acharya R, Poss M. Mutant-bin: unsupervised haplotype estimation of viral population diversity without reference genome. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 20: 453-63. PMID 23718149 DOI: 10.1089/Cmb.2012.0174  0.398
2013 Chong YL, Lam TT, Kim O, Lu H, Dunn P, Poss M. Successful establishment and global dispersal of genotype VI avian paramyxovirus serotype 1 after cross species transmission. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 17: 260-8. PMID 23628639 DOI: 10.1016/J.Meegid.2013.04.025  0.432
2013 Pepin KM, Wang J, Webb CT, Hoeting JA, Poss M, Hudson PJ, Hong W, Zhu H, Guan Y, Riley S. Anticipating the prevalence of avian influenza subtypes H9 and H5 in live-bird markets. Plos One. 8: e56157. PMID 23409145 DOI: 10.1371/Journal.Pone.0056157  0.308
2013 Antonovics J, Boots M, Ebert D, Koskella B, Poss M, Sadd BM. The origin of specificity by means of natural selection: evolved and nonhost resistance in host-pathogen interactions. Evolution; International Journal of Organic Evolution. 67: 1-9. PMID 23289557 DOI: 10.1111/J.1558-5646.2012.01793.X  0.358
2013 Pepin KM, Wang J, Webb CT, Smith GJ, Poss M, Hudson PJ, Hong W, Zhu H, Riley S, Guan Y. Multiannual patterns of influenza A transmission in Chinese live bird market systems. Influenza and Other Respiratory Viruses. 7: 97-107. PMID 22458429 DOI: 10.1111/J.1750-2659.2012.00354.X  0.371
2012 Elleder D, Kim O, Padhi A, Bankert JG, Simeonov I, Schuster SC, Wittekindt NE, Motameny S, Poss M. Polymorphic integrations of an endogenous gammaretrovirus in the mule deer genome. Journal of Virology. 86: 2787-96. PMID 22190723 DOI: 10.1128/Jvi.06859-11  0.42
2011 Poss M. Virus dynamics and evolution: bridging scales and disciplines. Viruses. 3: 1432-8. PMID 21994789 DOI: 10.3390/V3081432  0.491
2011 Li L, Padhi A, Ranjeva SL, Donaldson SC, Warf BC, Mugamba J, Johnson D, Opio Z, Jayarao B, Kapur V, Poss M, Schiff SJ. Association of bacteria with hydrocephalus in Ugandan infants. Journal of Neurosurgery. Pediatrics. 7: 73-87. PMID 21194290 DOI: 10.3171/2010.9.Peds10162  0.351
2011 Pathak AK, Boag B, Poss M, Harvill ET, Cattadori IM. Seasonal breeding drives the incidence of a chronic bacterial infection in a free-living herbivore population. Epidemiology and Infection. 139: 1210-9. PMID 20943004 DOI: 10.1017/S0950268810002311  0.458
2010 Simeonov I, Gong X, Kim O, Poss M, Chiaromonte F, Fricks J. Exploratory Spatial Analysis of in vitro Respiratory Syncytial Virus Co-infections. Viruses. 2: 2782-802. PMID 21994640 DOI: 10.3390/V2122782  0.49
2010 Padhi A, Ross H, Terwee J, Vandewoude S, Poss M. Profound differences in virus population genetics correspond to protection from CD4 decline resulting from feline lentivirus coinfection. Viruses. 2: 2663-80. PMID 21994636 DOI: 10.3390/V2122663  0.515
2010 Wittekindt NE, Padhi A, Schuster SC, Qi J, Zhao F, Tomsho LP, Kasson LR, Packard M, Cross P, Poss M. Nodeomics: pathogen detection in vertebrate lymph nodes using meta-transcriptomics. Plos One. 5: e13432. PMID 20976145 DOI: 10.1371/Journal.Pone.0013432  0.327
2010 Thakar J, Poss M, Albert R, Long GH, Zhang R. Dynamic models of immune responses: what is the ideal level of detail? Theoretical Biology & Medical Modelling. 7: 35. PMID 20727155 DOI: 10.1186/1742-4682-7-35  0.364
2010 Chong YL, Padhi A, Hudson PJ, Poss M. The effect of vaccination on the evolution and population dynamics of avian paramyxovirus-1. Plos Pathogens. 6: e1000872. PMID 20421950 DOI: 10.1371/Journal.Ppat.1000872  0.323
2010 VandeWoude S, Troyer J, Poss M. Restrictions to cross-species transmission of lentiviral infection gleaned from studies of FIV. Veterinary Immunology and Immunopathology. 134: 25-32. PMID 19896218 DOI: 10.1016/J.Vetimm.2009.10.005  0.501
2009 Demirel MC, Kao P, Malvadkar N, Wang H, Gong X, Poss M, Allara DL. Bio-organism sensing via surface enhanced Raman spectroscopy on controlled metal/polymer nanostructured substrates. Biointerphases. 4: 35-41. PMID 20408721 DOI: 10.1116/1.3147962  0.317
2009 Roy S, Lavine J, Chiaromonte F, Terwee J, VandeWoude S, Bjornstad O, Poss M. Multivariate statistical analyses demonstrate unique host immune responses to single and dual lentiviral infection. Plos One. 4: e7359. PMID 19806226 DOI: 10.1371/Journal.Pone.0007359  0.643
2009 Padhi A, Poss M. Population dynamics and rates of molecular evolution of a recently emerged paramyxovirus, avian metapneumovirus subtype C. Journal of Virology. 83: 2015-9. PMID 19052092 DOI: 10.1128/Jvi.02047-08  0.418
2008 Lloyd-Smith JO, Poss M, Grenfell BT. HIV-1/parasite co-infection and the emergence of new parasite strains. Parasitology. 135: 795-806. PMID 18371236 DOI: 10.1017/S0031182008000292  0.417
2008 Lavine JS, Poss M, Grenfell BT. Directly transmitted viral diseases: modeling the dynamics of transmission. Trends in Microbiology. 16: 165-72. PMID 18356058 DOI: 10.1016/J.Tim.2008.01.007  0.43
2008 Poss M, Ross H, Rodrigo A, Terwee J, Vandewoude S, Biek R. The molecular biology and evolution of feline immunodeficiency viruses of cougars. Veterinary Immunology and Immunopathology. 123: 154-8. PMID 18295904 DOI: 10.1016/J.Vetimm.2008.01.022  0.552
2008 Poss M, Ross H. Evolution of the long terminal repeat and accessory genes of feline immunodeficiency virus genomes from naturally infected cougars. Virology. 370: 55-62. PMID 17904608 DOI: 10.1016/J.Virol.2007.08.024  0.493
2007 Bruen TC, Poss M. Recombination in feline immunodeficiency virus genomes from naturally infected cougars. Virology. 364: 362-70. PMID 17445856 DOI: 10.1016/J.Virol.2007.03.023  0.484
2007 Burkala E, Poss M. Evolution of feline immunodeficiency virus Gag proteins. Virus Genes. 35: 251-64. PMID 17265140 DOI: 10.1007/S11262-006-0058-8  0.338
2007 Poss M, Idoine A, Ross HA, Terwee JA, VandeWoude S, Rodrigo A. Recombination in feline lentiviral genomes during experimental cross-species infection. Virology. 359: 146-51. PMID 17046045 DOI: 10.1016/J.Virol.2006.08.026  0.5
2006 Biek R, Ruth TK, Murphy KM, Anderson CR, Johnson M, DeSimone R, Gray R, Hornocker MG, Gillin CM, Poss M. Factors associated with pathogen seroprevalence and infection in Rocky Mountain cougars. Journal of Wildlife Diseases. 42: 606-15. PMID 17092891 DOI: 10.7589/0090-3558-42.3.606  0.422
2006 Blake DJ, Graham J, Poss M. Quantification of Feline immunodeficiency virus (FIVpco) in peripheral blood mononuclear cells, lymph nodes and plasma of naturally infected cougars. The Journal of General Virology. 87: 967-75. PMID 16528047 DOI: 10.1099/Vir.0.81450-0  0.447
2006 Poss M, Ross HA, Painter SL, Holley DC, Terwee JA, Vandewoude S, Rodrigo A. Feline lentivirus evolution in cross-species infection reveals extensive G-to-A mutation and selection on key residues in the viral polymerase. Journal of Virology. 80: 2728-37. PMID 16501082 DOI: 10.1128/Jvi.80.6.2728-2737.2006  0.512
2006 Biek R, Drummond AJ, Poss M. A virus reveals population structure and recent demographic history of its carnivore host. Science (New York, N.Y.). 311: 538-41. PMID 16439664 DOI: 10.1126/Science.1121360  0.471
2006 Biek R, Ruth TK, Murphy KM, Anderson CR, Poss M. Examining effects of persistent retroviral infection on fitness and pathogen susceptibility in a natural feline host Canadian Journal of Zoology. 84: 365-373. DOI: 10.1139/Z06-006  0.494
2005 Smirnova N, Troyer JL, Schissler J, Terwee J, Poss M, VandeWoude S. Feline lentiviruses demonstrate differences in receptor repertoire and envelope structural elements. Virology. 342: 60-76. PMID 16120451 DOI: 10.1016/J.Virol.2005.07.024  0.453
2005 Pedersen AB, Altizer S, Poss M, Cunningham AA, Nunn CL. Patterns of host specificity and transmission among parasites of wild primates. International Journal For Parasitology. 35: 647-57. PMID 15862578 DOI: 10.1016/J.Ijpara.2005.01.005  0.414
2004 Poss M, Holley DC, Biek R, Cox H, Gerdes J. Development of a homology model for clade A human immunodeficiency virus type 1 gp120 to localize temporal substitutions arising in recently infected women. The Journal of General Virology. 85: 1479-84. PMID 15166431 DOI: 10.1099/Vir.0.79974-0  0.491
2003 Biek R, Rodrigo AG, Holley D, Drummond A, Anderson CR, Ross HA, Poss M. Epidemiology, genetic diversity, and evolution of endemic feline immunodeficiency virus in a population of wild cougars. Journal of Virology. 77: 9578-89. PMID 12915571 DOI: 10.1128/Jvi.77.17.9578-9589.2003  0.503
2003 Painter SL, Biek R, Holley DC, Poss M. Envelope variants from women recently infected with clade A human immunodeficiency virus type 1 confer distinct phenotypes that are discerned by competition and neutralization experiments. Journal of Virology. 77: 8448-61. PMID 12857914 DOI: 10.1128/Jvi.77.15.8448-8461.2003  0.489
2003 Altizer S, Nunn CL, Thrall PH, Gittleman JL, Antonovics J, Cunningham AA, Dobson AP, Ezenwa V, Jones KE, Pedersen AB, Poss M, Pulliam JRC. Social Organization and Parasite Risk in Mammals: Integrating Theory and Empirical Studies Annual Review of Ecology, Evolution, and Systematics. 34: 517-547. DOI: 10.1146/Annurev.Ecolsys.34.030102.151725  0.355
2002 Biek R, Zarnke RL, Gillin C, Wild M, Squires JR, Poss M. Serologic survey for viral and bacterial infections in western populations of Canada lynx (Lynx canadensis). Journal of Wildlife Diseases. 38: 840-5. PMID 12528455 DOI: 10.7589/0090-3558-38.4.840  0.448
1999 Poss M, Overbaugh J. Variants from the diverse virus population identified at seroconversion of a clade A human immunodeficiency virus type 1-infected woman have distinct biological properties Journal of Virology. 73: 5255-5264. PMID 10364271 DOI: 10.1128/Jvi.73.7.5255-5264.1999  0.518
1999 Overbaugh J, Kreiss J, Poss M, Lewis P, Mostad S, John G, Nduati R, Mbori-Ngacha D, Martin H, Richardson B, Jackson S, Neilson J, Long EM, Panteleeff D, Welch M, et al. Studies of human immunodeficiency virus type 1 mucosal viral shedding and transmission in Kenya. The Journal of Infectious Diseases. S401-4. PMID 10099106 DOI: 10.1086/314792  0.446
1998 Poss M, Rodrigo AG, Gosink JJ, Learn GH, de Vange Panteleeff D, Martin HL, Bwayo J, Kreiss JK, Overbaugh J. Evolution of Envelope Sequences from the Genital Tract and Peripheral Blood of Women Infected with Clade A Human Immunodeficiency Virus Type 1 Journal of Virology. 72: 8240-8251. DOI: 10.1128/Jvi.72.10.8240-8251.1998  0.45
1997 Poss M, Gosink J, Thomas E, Kreiss JK, Ndinya-Achola J, Mandaliya K, Bwayo J, Overbaugh J. Phylogenetic evaluation of Kenyan HIV type 1 isolates Aids Research and Human Retroviruses. 13: 493-499. PMID 9100991 DOI: 10.1089/Aid.1997.13.493  0.334
1995 Poss M, Martin HL, Kreiss JK, Granville L, Chohan B, Nyange P, Mandaliya K, Overbaugh J. Diversity in virus populations from genital secretions and peripheral blood from women recently infected with human immunodeficiency virus type 1 Journal of Virology. 69: 8118-8122. PMID 7494333 DOI: 10.1128/Jvi.69.12.8118-8122.1995  0.48
1989 Mullins JI, Hoover EA, Overbaugh J, Quackenbush SL, Donahue PR, Poss ML. FeLV-FAIDS-induced immunodeficiency syndrome in cats Veterinary Immunology and Immunopathology. 21: 25-37. PMID 2549691 DOI: 10.1016/0165-2427(89)90127-X  0.314
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