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Ka-Chun Wong, Ph.D. - Publications

Affiliations: 
2011-2014 Computer Science University of Toronto, Toronto, ON, Canada 
Area:
Bioinformatics, Computational Biology, Data Science, Optimization
Website:
http://www.cs.utoronto.ca/~wkc/
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107 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Su Y, Yu Z, Yang Y, Wong KC, Li X. Distribution-Agnostic Deep Learning Enables Accurate Single-Cell Data Recovery and Transcriptional Regulation Interpretation. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). e2307280. PMID 38380499 DOI: 10.1002/advs.202307280  0.305
2023 Liu Z, Wong HM, Chen X, Lin J, Zhang S, Yan S, Wang F, Li X, Wong KC. MotifHub: Detection of trans-acting DNA motif group with probabilistic modeling algorithm. Computers in Biology and Medicine. 168: 107753. PMID 38039889 DOI: 10.1016/j.compbiomed.2023.107753  0.772
2023 Xie W, Chen X, Zheng Z, Wang F, Zhu X, Lin Q, Sun Y, Wong KC. LncRNA-Top: Controlled deep learning approaches for lncRNA gene regulatory relationship annotations across different platforms. Iscience. 26: 108197. PMID 37965148 DOI: 10.1016/j.isci.2023.108197  0.596
2023 Sun P, Fan S, Li S, Zhao Y, Lu C, Wong KC, Li X. Automated exploitation of deep learning for cancer patient stratification across multiple types. Bioinformatics (Oxford, England). 39. PMID 37934154 DOI: 10.1093/bioinformatics/btad654  0.584
2023 Zhu H, Yang Y, Wang Y, Wang F, Huang Y, Chang Y, Wong KC, Li X. Dynamic characterization and interpretation for protein-RNA interactions across diverse cellular conditions using HDRNet. Nature Communications. 14: 6824. PMID 37884495 DOI: 10.1038/s41467-023-42547-1  0.611
2023 Wang F, Alinejad-Rokny H, Lin J, Gao T, Chen X, Zheng Z, Meng L, Li X, Wong KC. A Lightweight Framework For Chromatin Loop Detection at the Single-Cell Level. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). e2303502. PMID 37816141 DOI: 10.1002/advs.202303502  0.799
2023 Toseef M, Olayemi Petinrin O, Wang F, Rahaman S, Liu Z, Li X, Wong KC. Deep transfer learning for clinical decision-making based on high-throughput data: comprehensive survey with benchmark results. Briefings in Bioinformatics. 24. PMID 37455245 DOI: 10.1093/bib/bbad254  0.589
2023 Fan Y, Wang Y, Wang F, Huang L, Yang Y, Wong KC, Li X. Reliable Identification and Interpretation of Single-Cell Molecular Heterogeneity and Transcriptional Regulation using Dynamic Ensemble Pruning. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). e2205442. PMID 37290050 DOI: 10.1002/advs.202205442  0.657
2023 Petinrin OO, Saeed F, Toseef M, Liu Z, Basurra S, Muyide IO, Li X, Lin Q, Wong KC. Machine learning in metastatic cancer research: Potentials, possibilities, and prospects. Computational and Structural Biotechnology Journal. 21: 2454-2470. PMID 37077177 DOI: 10.1016/j.csbj.2023.03.046  0.721
2023 Zheng Z, Chen J, Chen X, Huang L, Xie W, Lin Q, Li X, Wong KC. Enabling Single-Cell Drug Response Annotations from Bulk RNA-Seq Using SCAD. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). e2204113. PMID 36762572 DOI: 10.1002/advs.202204113  0.771
2023 Zhang S, Li X, Lin J, Lin Q, Wong KC. Review of Single-cell RNA-seq Data Clustering for Cell Type Identification and Characterization. Rna (New York, N.Y.). PMID 36737104 DOI: 10.1261/rna.078965.121  0.784
2023 Wang Y, Yu Z, Li S, Bian C, Liang Y, Wong KC, Li X. scBGEDA: deep single-cell clustering analysis via a dual denoising autoencoder with bipartite graph ensemble clustering. Bioinformatics (Oxford, England). 39. PMID 36734596 DOI: 10.1093/bioinformatics/btad075  0.658
2023 Yu Z, Su Y, Lu Y, Yang Y, Wang F, Zhang S, Chang Y, Wong KC, Li X. Topological identification and interpretation for single-cell gene regulation elucidation across multiple platforms using scMGCA. Nature Communications. 14: 400. PMID 36697410 DOI: 10.1038/s41467-023-36134-7  0.785
2023 Hou Z, Yang Y, Ma Z, Wong KC, Li X. Learning the protein language of proteome-wide protein-protein binding sites via explainable ensemble deep learning. Communications Biology. 6: 73. PMID 36653447 DOI: 10.1038/s42003-023-04462-5  0.61
2022 Wang Y, Hou Z, Yang Y, Wong KC, Li X. Genome-wide identification and characterization of DNA enhancers with a stacked multivariate fusion framework. Plos Computational Biology. 18: e1010779. PMID 36520922 DOI: 10.1371/journal.pcbi.1010779  0.676
2022 Wang F, Gao T, Lin J, Zheng Z, Huang L, Toseef M, Li X, Wong KC. GILoop: Robust chromatin loop calling across multiple sequencing depths on Hi-C data. Iscience. 25: 105535. PMID 36444296 DOI: 10.1016/j.isci.2022.105535  0.789
2022 Huang L, Lin J, Liu R, Zheng Z, Meng L, Chen X, Li X, Wong KC. CoaDTI: multi-modal co-attention based framework for drug-target interaction annotation. Briefings in Bioinformatics. PMID 36274236 DOI: 10.1093/bib/bbac446  0.769
2022 Su Y, Zhu H, Wong KC, Chang Y, Li X. Hyperspectral Image Denoising via Weighted Multidirectional Low-Rank Tensor Recovery. Ieee Transactions On Cybernetics. PMID 36251897 DOI: 10.1109/TCYB.2022.3208095  0.579
2022 Su Y, Wang F, Zhang S, Liang Y, Wong KC, Li X. scWMC: Weighted Matrix Completion-based Imputation of scRNA-seq Data via Prior Subspace Information. Bioinformatics (Oxford, England). PMID 35984287 DOI: 10.1093/bioinformatics/btac570  0.752
2022 Bian C, Wang X, Su Y, Wang Y, Wong KC, Li X. scEFSC: Accurate single-cell RNA-seq data analysis via ensemble consensus clustering based on multiple feature selections. Computational and Structural Biotechnology Journal. 20: 2181-2197. PMID 35615016 DOI: 10.1016/j.csbj.2022.04.023  0.665
2022 Xie W, Zheng Z, Zhang W, Huang L, Lin Q, Wong KC. SRG-vote: Predicting miRNA-gene relationships via embedding and LSTM ensemble. Ieee Journal of Biomedical and Health Informatics. PMID 35471879 DOI: 10.1109/JBHI.2022.3169542  0.651
2022 Li S, Yang Y, Wang X, Li J, Yu J, Li X, Wong KC. Colorectal cancer subtype identification from differential gene expression levels using minimalist deep learning. Biodata Mining. 15: 12. PMID 35461302 DOI: 10.1186/s13040-022-00295-w  0.642
2022 Lu Y, Yu Z, Wang Y, Ma Z, Wong KC, Li X. GMHCC: High-throughput Analysis of Biomolecular Data using Graph-based Multiple Hierarchical Consensus Clustering. Bioinformatics (Oxford, England). PMID 35451457 DOI: 10.1093/bioinformatics/btac290  0.636
2022 Zheng Z, Xie W, Chen X, Wang F, Huang L, Li X, Lin Q, Wong KC. Subclass-specific Prognosis and Treatment Efficacy Inference in Head and Neck Squamous Carcinoma. Ieee Journal of Biomedical and Health Informatics. PMID 35439152 DOI: 10.1109/JBHI.2022.3168289  0.718
2022 Toseef M, Li X, Wong KC. Reducing healthcare disparities using multiple multiethnic data distributions with fine-tuning of transfer learning. Briefings in Bioinformatics. PMID 35323862 DOI: 10.1093/bib/bbac078  0.618
2022 Yang Y, Hou Z, Wang Y, Ma H, Sun P, Ma Z, Wong KC, Li X. HCRNet: high-throughput circRNA-binding event identification from CLIP-seq data using deep temporal convolutional network. Briefings in Bioinformatics. PMID 35189638 DOI: 10.1093/bib/bbac027  0.669
2021 Huang L, Lin J, Li X, Song L, Zheng Z, Wong KC. EGFI: drug-drug interaction extraction and generation with fusion of enriched entity and sentence information. Briefings in Bioinformatics. PMID 34791012 DOI: 10.1093/bib/bbab451  0.773
2021 Wang Y, Yang Y, Ma Z, Wong KC, Li X. EDCNN: Identification of Genome-Wide RNA-binding Proteins Using Evolutionary Deep Convolutional Neural Network. Bioinformatics (Oxford, England). PMID 34694393 DOI: 10.1093/bioinformatics/btab739  0.632
2021 Li X, Li S, Huang L, Zhang S, Wong KC. High-throughput single-cell RNA-seq data imputation and characterization with surrogate-assisted automated deep learning. Briefings in Bioinformatics. PMID 34553763 DOI: 10.1093/bib/bbab368  0.795
2021 Lin J, Huang L, Chen X, Zhang S, Wong KC. DeepMotifSyn: a deep learning approach to synthesize heterodimeric DNA motifs. Briefings in Bioinformatics. PMID 34524404 DOI: 10.1093/bib/bbab334  0.8
2021 Petinrin OO, Li X, Wong KC. Particle Swarm Optimized Gaussian Process Classifier for Treatment Discontinuation Prediction in Multicohort Metastatic Castration-Resistant Prostate Cancer Patients. Ieee Journal of Biomedical and Health Informatics. PMID 34379600 DOI: 10.1109/JBHI.2021.3103989  0.593
2021 Hou Z, Yang Y, Li H, Wong KC, Li X. iDeepSubMito: identification of protein submitochondrial localization with deep learning. Briefings in Bioinformatics. PMID 34337657 DOI: 10.1093/bib/bbab288  0.632
2021 Dong M, Tang C, Ji J, Lin Q, Wong KC. Transmission trend of the COVID-19 pandemic predicted by dendritic neural regression. Applied Soft Computing. 111: 107683. PMID 34248448 DOI: 10.1016/j.asoc.2021.107683  0.622
2021 Wang Y, Li X, Wong KC, Chang Y, Yang S. Evolutionary Multiobjective Clustering Algorithms With Ensemble for Patient Stratification. Ieee Transactions On Cybernetics. PMID 33961576 DOI: 10.1109/TCYB.2021.3069434  0.635
2021 Yu Z, Bian C, Liu G, Zhang S, Wong KC, Li X. Elucidating transcriptomic profiles from single-cell RNA sequencing data using nature-inspired compressed sensing. Briefings in Bioinformatics. PMID 33855366 DOI: 10.1093/bib/bbab125  0.792
2021 Li X, Zhang S, Wong KC. Deep embedded clustering with multiple objectives on scRNA-seq data. Briefings in Bioinformatics. PMID 33822877 DOI: 10.1093/bib/bbab090  0.789
2021 Chen J, Wong KC. Analyzing High-Order Epistasis from Genotype-Phenotype Maps Using 'Epistasis' Package. Methods in Molecular Biology (Clifton, N.J.). 2212: 265-275. PMID 33733361 DOI: 10.1007/978-1-0716-0947-7_16  0.462
2021 Rahaman S, Li X, Yu J, Wong KC. CancerEMC: frontline non-invasive cancer screening from circulating protein biomarkers and mutations in cell-free DNA. Bioinformatics (Oxford, England). PMID 33515231 DOI: 10.1093/bioinformatics/btab044  0.569
2021 Yang Y, Li S, Wang Y, Ma Z, Wong KC, Li X. Identification of haploinsufficient genes from epigenomic data using deep forest. Briefings in Bioinformatics. PMID 33454736 DOI: 10.1093/bib/bbaa393  0.626
2020 Yang Y, Hou Z, Ma Z, Li X, Wong KC. iCircRBP-DHN: identification of circRNA-RBP interaction sites using deep hierarchical network. Briefings in Bioinformatics. PMID 33126261 DOI: 10.1093/bib/bbaa274  0.628
2020 Li X, Li S, Wang Y, Zhang S, Wong KC. Identification of pan-cancer Ras pathway activation with deep learning. Briefings in Bioinformatics. PMID 33126245 DOI: 10.1093/bib/bbaa258  0.757
2020 Chen J, Wong KC. RNCE: network integration with reciprocal neighbors contextual encoding for multi-modal drug community study on cancer targets. Briefings in Bioinformatics. PMID 32577712 DOI: 10.1093/bib/bbaa118  0.47
2020 Liu S, Lin Q, Wong KC, Coello CAC, Li J, Ming Z, Zhang J. A Self-Guided Reference Vector Strategy for Many-Objective Optimization. Ieee Transactions On Cybernetics. PMID 32396116 DOI: 10.1109/Tcyb.2020.2971638  0.604
2020 Zhang S, Li X, Lin Q, Lin J, Wong KC. Uncovering the key dimensions of high-throughput biomolecular data using deep learning. Nucleic Acids Research. PMID 32232416 DOI: 10.1093/Nar/Gkaa191  0.8
2020 Chen J, Hou J, Wong KC. Categorical Matrix Completion with Active Learning for High-throughput Screening. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 32203025 DOI: 10.1109/Tcbb.2020.2982142  0.54
2020 Wang Y, Ma Z, Wong KC, Li X. Evolving Multiobjective Cancer Subtype Diagnosis from Cancer Gene Expression Data. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 32086219 DOI: 10.1109/Tcbb.2020.2974953  0.658
2020 Li X, Zhang S, Wong KC. Evolving Transcriptomic Profiles from Single-cell RNA-seq Data using Nature-Inspired Multiobjective Optimization. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 32031947 DOI: 10.1109/Tcbb.2020.2971993  0.787
2020 Li X, Zhang S, Wong KC. Multiobjective Genome-Wide RNA-Binding Event Identification From CLIP-Seq Data. Ieee Transactions On Cybernetics. PMID 31940583 DOI: 10.1109/Tcyb.2019.2960515  0.784
2020 Wang Y, Ma Z, Wong K, Li X. Nature-inspired multiobjective patient stratification from cancer gene expression data Information Sciences. 526: 245-262. DOI: 10.1016/J.Ins.2020.03.095  0.628
2019 Zhang S, Li X, Lin Q, Wong KC. Nature-Inspired Compressed Sensing for Transcriptomic Profiling From Random Composite Measurements. Ieee Transactions On Cybernetics. PMID 31751263 DOI: 10.1109/Tcyb.2019.2951402  0.805
2019 Yan S, Wong KC. Context awareness and embedding for biomedical event extraction. Bioinformatics (Oxford, England). PMID 31392318 DOI: 10.1093/Bioinformatics/Btz607  0.749
2019 Wong KC, Chen J, Zhang J, Lin J, Yan S, Zhang S, Li X, Liang C, Peng C, Lin Q, Kwong S, Yu J. Early Cancer Detection from Multianalyte Blood Test Results. Iscience. 15: 332-341. PMID 31103852 DOI: 10.1016/J.Isci.2019.04.035  0.75
2019 Wang Y, Liu B, Ma Z, Wong KC, Li X. Nature-Inspired Multiobjective Cancer Subtype Diagnosis. Ieee Journal of Translational Engineering in Health and Medicine. 7: 4300112. PMID 30915261 DOI: 10.1109/Jtehm.2019.2891746  0.672
2019 Li X, Wong KC. Single-Cell RNA Sequencing Data Interpretation by Evolutionary Multiobjective Clustering. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 30908236 DOI: 10.1109/Tcbb.2019.2906601  0.673
2019 Yan S, Wong KC. GESgnExt: Gene Expression Signature Extraction and Meta-analysis on Gene Expression Omnibus. Ieee Journal of Biomedical and Health Informatics. PMID 30714937 DOI: 10.1109/Jbhi.2019.2896144  0.77
2019 Peng C, Duarte CM, Costa DP, Guinet C, Harcourt RG, Hindell MA, McMahon CR, Muelbert M, Thums M, Wong K, Zhang X. Deep Learning Resolves Representative Movement Patterns in a Marine Predator Species Applied Sciences. 9: 2935. DOI: 10.3390/App9142935  0.304
2019 Wong K, Zhang J, Yan S, Li X, Lin Q, Kwong S, Liang C. DNA Sequencing Technologies Acm Computing Surveys. 52: 1-30. DOI: 10.1145/3340286  0.776
2019 Wang W, Yang S, Lin Q, Zhang Q, Wong K, Coello Coello CA, Chen J. An Effective Ensemble Framework for Multiobjective Optimization Ieee Transactions On Evolutionary Computation. 23: 645-659. DOI: 10.1109/Tevc.2018.2879078  0.605
2019 Lin Q, Liu S, Wong K, Gong M, Coello Coello CA, Chen J, Zhang J. A Clustering-Based Evolutionary Algorithm for Many-Objective Optimization Problems Ieee Transactions On Evolutionary Computation. 23: 391-405. DOI: 10.1109/Tevc.2018.2866927  0.588
2019 Liu S, Lin Q, Wong K, Ma L, Coello Coello CA, Gong D. A novel multi-objective evolutionary algorithm with dynamic decomposition strategy Swarm and Evolutionary Computation. 48: 182-200. DOI: 10.1016/J.Swevo.2019.02.010  0.588
2018 Li X, Zhang S, Wong KC. Single-cell RNA-seq Interpretations using Evolutionary Multiobjective Ensemble Pruning. Bioinformatics (Oxford, England). PMID 30596898 DOI: 10.1093/Bioinformatics/Bty1056  0.766
2018 Wong KC, Lin J, Li X, Lin Q, Liang C, Song YQ. Heterodimeric DNA motif synthesis and validations. Nucleic Acids Research. PMID 30590725 DOI: 10.1093/Nar/Gky1297  0.777
2018 Wong KC, Yan S, Lin Q, Li X, Peng C. Deleterious Non-Synonymous Single Nucleotide Polymorphism Predictions on Human Transcription Factors. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 30475727 DOI: 10.1109/Tcbb.2018.2882548  0.778
2018 Lin J, Wong KC. Off-target predictions in CRISPR-Cas9 gene editing using deep learning. Bioinformatics (Oxford, England). 34: i656-i663. PMID 30423072 DOI: 10.1093/Bioinformatics/Bty554  0.779
2018 Wong KC. DNA Motif Recognition Modeling from Protein Sequences. Iscience. 7: 198-211. PMID 30267681 DOI: 10.1016/J.Isci.2018.09.003  0.336
2018 Zhang S, Li X, Lin Q, Wong KC. Synergizing CRISPR/Cas9 Off-Target Predictions for Ensemble Insights and Practical Applications. Bioinformatics (Oxford, England). PMID 30169558 DOI: 10.1093/Bioinformatics/Bty748  0.791
2018 Li X, Zhang S, Wong KC. Nature-Inspired Multiobjective Epistasis Elucidation from Genome-Wide Association Studies. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 29994485 DOI: 10.1109/Tcbb.2018.2849759  0.767
2018 Zhang J, Kwong S, Liu G, Lin Q, Wong KC. PathEmb: Random Walk based Document Embedding for Global Pathway Similarity Search. Ieee Journal of Biomedical and Health Informatics. PMID 29993756 DOI: 10.1109/Jbhi.2018.2830806  0.656
2018 Li X, Wong KC. Evolutionary Multiobjective Clustering and Its Applications to Patient Stratification. Ieee Transactions On Cybernetics. PMID 29993679 DOI: 10.1109/Tcyb.2018.2817480  0.631
2018 Lin Q, Liu S, Zhu Q, Tang C, Song R, Chen J, Coello CAC, Wong K, Zhang J. Particle Swarm Optimization With a Balanceable Fitness Estimation for Many-Objective Optimization Problems Ieee Transactions On Evolutionary Computation. 22: 32-46. DOI: 10.1109/Tevc.2016.2631279  0.588
2018 Lin Q, Ma Y, Chen J, Zhu Q, Coello CAC, Wong K, Chen F. An adaptive immune-inspired multi-objective algorithm with multiple differential evolution strategies Information Sciences. 430: 46-64. DOI: 10.1016/J.Ins.2017.11.030  0.616
2018 Cui L, Li G, Zhu Z, Lin Q, Wong K, Chen J, Lu N, Lu J. Adaptive multiple-elites-guided composite differential evolution algorithm with a shift mechanism Information Sciences. 422: 122-143. DOI: 10.1016/J.Ins.2017.09.002  0.608
2018 Chen J, Yan S, Wong K. Verbal aggression detection on Twitter comments: convolutional neural network for short-text sentiment analysis Neural Computing and Applications. 32: 10809-10818. DOI: 10.1007/S00521-018-3442-0  0.773
2017 Li X, Wong KC. Elucidating Genome-Wide Protein-RNA Interactions using Differential Evolution. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 29990254 DOI: 10.1109/Tcbb.2017.2776224  0.664
2017 Li X, Wong KC. Multiobjective Patient Stratification using Evolutionary Multiobjective Optimization. Ieee Journal of Biomedical and Health Informatics. PMID 29990162 DOI: 10.1109/Jbhi.2017.2769711  0.661
2017 Zhang J, Kwong S, Wong KC. ToBio: Global Pathway Similarity Search based on Topological and Biological Features. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 29990160 DOI: 10.1109/Tcbb.2017.2769642  0.506
2017 Lin Q, Jin G, Ma Y, Wong KC, Coello Coello CA, Li J, Chen J, Zhang J. A Diversity-Enhanced Resource Allocation Strategy for Decomposition-Based Multiobjective Evolutionary Algorithm. Ieee Transactions On Cybernetics. PMID 28885164 DOI: 10.1109/Tcyb.2017.2739185  0.596
2017 Yan S, Wong KC. Elucidating high-dimensional cancer hallmark annotation via enriched ontology. Journal of Biomedical Informatics. PMID 28723579 DOI: 10.1016/J.Jbi.2017.07.011  0.757
2017 Li X, Ma S, Wong KC. Evolving Spatial Clusters of Genomic Regions from High-Throughput Chromatin Conformation Capture data. Ieee Transactions On Nanobioscience. PMID 28708563 DOI: 10.1109/Tnb.2017.2725991  0.643
2017 Wong KC. MotifHyades: Expectation Maximization for de novo DNA Motif Pair Discovery on Paired Sequences. Bioinformatics (Oxford, England). PMID 28633280 DOI: 10.1093/Bioinformatics/Btx381  0.352
2017 Zhu Q, Lin Q, Chen W, Wong KC, Coello Coello CA, Li J, Chen J, Zhang J. An External Archive-Guided Multiobjective Particle Swarm Optimization Algorithm. Ieee Transactions On Cybernetics. PMID 28613192 DOI: 10.1109/Tcyb.2017.2710133  0.605
2017 Li X, Wong KC. A Comparative Study for Identifying the Chromosome-Wide Spatial Clusters from High-Throughput Chromatin Conformation Capture data. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 28333638 DOI: 10.1109/Tcbb.2017.2684800  0.652
2017 Zhang J, Kwong S, Jia Y, Wong KC. NSSRF: global network similarity search with subgraph signatures and its applications. Bioinformatics (Oxford, England). PMID 28158419 DOI: 10.1093/Bioinformatics/Btx051  0.48
2017 Cui L, Li G, Zhu Z, Lin Q, Wen Z, Lu N, Wong K, Chen J. A novel artificial bee colony algorithm with an adaptive population size for numerical function optimization Information Sciences. 414: 53-67. DOI: 10.1016/J.Ins.2017.05.044  0.596
2016 Wong KC, Peng C, Yan S, Liang C. Probabilistic Inference on Multiple Normalized Genome-Wide Signal Profiles with Model Regularization. Ieee Transactions On Nanobioscience. PMID 27893398 DOI: 10.1109/Tnb.2016.2631406  0.79
2016 Wong KC, Li Y, Peng C, Wong HS. A Comparison Study for DNA Motif Modeling on Protein Binding Microarray. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 13: 261-271. PMID 27045826 DOI: 10.1109/Tcbb.2015.2443782  0.437
2016 Wong KC, Peng C, Li Y. Evolving Transcription Factor Binding Site Models From Protein Binding Microarray Data. Ieee Transactions On Cybernetics. PMID 26887021 DOI: 10.1109/Tcyb.2016.2519380  0.463
2015 Wong KC, Peng C, Li Y. Probabilistic Inference on Multiple Normalized Signal Profiles from Next Generation Sequencing: Transcription Factor Binding Sites. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 12: 1416-28. PMID 26671811 DOI: 10.1109/Tcbb.2015.2424421  0.48
2015 Wong KC, Li Y, Peng C, Moses AM, Zhang Z. Computational learning on specificity-determining residue-nucleotide interactions. Nucleic Acids Research. PMID 26527718 DOI: 10.1093/Nar/Gkv1134  0.616
2015 Wong KC, Li Y, Peng C. Identification of Coupling DNA Motif Pairs on Long-Range Chromatin Interactions in Human K562 Cells. Bioinformatics (Oxford, England). PMID 26411866 DOI: 10.1093/Bioinformatics/Btv555  0.384
2015 Wong KC, Li Y, Peng C, Zhang Z. SignalSpider: probabilistic pattern discovery on multiple normalized ChIP-Seq signal profiles. Bioinformatics (Oxford, England). 31: 17-24. PMID 25192742 DOI: 10.1093/Bioinformatics/Btu604  0.633
2014 Cromar G, Wong KC, Loughran N, On T, Song H, Xiong X, Zhang Z, Parkinson J. New tricks for "old" domains: how novel architectures and promiscuous hubs contributed to the organization and evolution of the ECM. Genome Biology and Evolution. 6: 2897-917. PMID 25323955 DOI: 10.1093/Gbe/Evu228  0.559
2014 Li Y, Liang C, Wong KC, Luo J, Zhang Z. Mirsynergy: detecting synergistic miRNA regulatory modules by overlapping neighbourhood expansion. Bioinformatics (Oxford, England). 30: 2627-35. PMID 24894504 DOI: 10.1093/Bioinformatics/Btu373  0.577
2014 Li Y, Liang C, Wong KC, Jin K, Zhang Z. Inferring probabilistic miRNA-mRNA interaction signatures in cancers: a role-switch approach. Nucleic Acids Research. 42: e76. PMID 24609385 DOI: 10.1093/Nar/Gku182  0.578
2014 Wong KC, Zhang Z. SNPdryad: predicting deleterious non-synonymous human SNPs using only orthologous protein sequences. Bioinformatics (Oxford, England). PMID 24389653 DOI: 10.1093/Bioinformatics/Btt769  0.571
2014 Li Y, Goldenberg A, Wong KC, Zhang Z. A probabilistic approach to explore human miRNA targetome by integrating miRNA-overexpression data and sequence information. Bioinformatics (Oxford, England). 30: 621-8. PMID 24135265 DOI: 10.1093/Bioinformatics/Btt599  0.566
2014 Wong K, Peng C, Li Y, Chan T. Herd Clustering: A synergistic data clustering approach using collective intelligence Applied Soft Computing. 23: 61-75. DOI: 10.1016/J.Asoc.2014.05.034  0.402
2013 Wong KC, Chan TM, Peng C, Li Y, Zhang Z. DNA motif elucidation using belief propagation. Nucleic Acids Research. 41: e153. PMID 23814189 DOI: 10.1093/Nar/Gkt574  0.617
2012 Fan M, Wong KC, Ryu T, Ravasi T, Gao X. SECOM: a novel hash seed and community detection based-approach for genome-scale protein domain identification. Plos One. 7: e39475. PMID 22761802 DOI: 10.1371/Journal.Pone.0039475  0.345
2012 Leung Y, Wong MH, Wong KC, Zhang W, Leung KS. A novel web-based system for tropical cyclone analysis and prediction International Journal of Geographical Information Science. 26: 75-97. DOI: 10.1080/13658816.2011.572075  0.595
2012 Wong K, Wu C, Mok RK, Peng C, Zhang Z. Evolutionary multimodal optimization using the principle of locality Information Sciences. 194: 138-170. DOI: 10.1016/J.Ins.2011.12.016  0.559
2011 Chan TM, Wong KC, Lee KH, Wong MH, Lau CK, Tsui SK, Leung KS. Discovering approximate-associated sequence patterns for protein-DNA interactions. Bioinformatics (Oxford, England). 27: 471-8. PMID 21193520 DOI: 10.1093/Bioinformatics/Btq682  0.674
2011 Wong KC, Peng C, Wong MH, Leung KS. Generalizing and learning protein-DNA binding sequence representations by an evolutionary algorithm Soft Computing. 15: 1631-1642. DOI: 10.1007/s00500-011-0692-5  0.622
2010 Leung KS, Wong KC, Chan TM, Wong MH, Lee KH, Lau CK, Tsui SK. Discovering protein-DNA binding sequence patterns using association rule mining. Nucleic Acids Research. 38: 6324-37. PMID 20529874 DOI: 10.1093/Nar/Gkq500  0.661
2010 Wong KC, Leung KS, Wong MH. Protein structure prediction on a lattice model via multimodal optimization techniques Proceedings of the 12th Annual Genetic and Evolutionary Computation Conference, Gecco '10. 15-22. DOI: 10.1145/1830483.1830513  0.603
2010 Wong KC, Leung KS, Wong MH. Effect of spatial locality on an evolutionary algorithm for multimodal optimization Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6024: 481-490. DOI: 10.1007/978-3-642-12239-2-50  0.591
2009 Wong KC, Leung KS, Wong MH. An evolutionary algorithm with species-specific explosion for multimodal optimization Proceedings of the 11th Annual Genetic and Evolutionary Computation Conference, Gecco-2009. 923-930. DOI: 10.1145/1569901.1570027  0.583
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