| Year |
Citation |
Score |
| 2024 |
Rüber L, Britz R, Conway K, Bista I, McCarthy S, Wood J, Smith M, Oliver K, Howe K, Durbin R. The genome sequence of the Dracula fish, (Britz, Conway & Rüber, 2009). Wellcome Open Research. 9: 194. PMID 39224769 DOI: 10.12688/wellcomeopenres.21117.1 |
0.363 |
|
| 2024 |
Sierra P, Durbin R. Identification of transposable element families from pangenome polymorphisms. Mobile Dna. 15: 13. PMID 38926873 DOI: 10.1186/s13100-024-00323-y |
0.335 |
|
| 2024 |
Li H, Durbin R. Genome assembly in the telomere-to-telomere era. Nature Reviews. Genetics. PMID 38649458 DOI: 10.1038/s41576-024-00718-w |
0.344 |
|
| 2024 |
Allentoft ME, Sikora M, Refoyo-Martínez A, Irving-Pease EK, Fischer A, Barrie W, Ingason A, Stenderup J, Sjögren KG, Pearson A, Sousa da Mota B, Schulz Paulsson B, Halgren A, Macleod R, Jørkov MLS, ... ... Durbin R, et al. Population genomics of post-glacial western Eurasia. Nature. 625: 301-311. PMID 38200295 DOI: 10.1038/s41586-023-06865-0 |
0.315 |
|
| 2023 |
Li H, Durbin R. Genome assembly in the telomere-to-telomere era. Arxiv. PMID 37645045 |
0.337 |
|
| 2023 |
Uliano-Silva M, Ferreira JGRN, Krasheninnikova K, Formenti G, Abueg L, Torrance J, Myers EW, Durbin R, Blaxter M, McCarthy SA. MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads. Bmc Bioinformatics. 24: 288. PMID 37464285 DOI: 10.1186/s12859-023-05385-y |
0.342 |
|
| 2023 |
Bista I, Wood JMD, Desvignes T, McCarthy SA, Matschiner M, Ning Z, Tracey A, Torrance J, Sims Y, Chow W, Smith M, Oliver K, Haggerty L, Salzburger W, Postlethwait JH, ... ... Durbin R, et al. Genomics of cold adaptations in the Antarctic notothenioid fish radiation. Nature Communications. 14: 3412. PMID 37296119 DOI: 10.1038/s41467-023-38567-6 |
0.335 |
|
| 2023 |
Ovchinnikov V, Uliano-Silva M, Wilkinson M, Wood J, Smith M, Oliver K, Sims Y, Torrance J, Suh A, McCarthy SA, Durbin R, O'Connell MJ. Caecilian genomes reveal the molecular basis of adaptation, and convergent evolution of limblessness in snakes and caecilians. Molecular Biology and Evolution. 40. PMID 37194566 DOI: 10.1093/molbev/msad102 |
0.334 |
|
| 2022 |
Gauthier J, Meier J, Legeai F, McClure M, Whibley A, Bretaudeau A, Boulain H, Parrinello H, Mugford ST, Durbin R, Zhou C, McCarthy S, Wheat CW, Piron-Prunier F, Monsempes C, et al. First chromosome scale genomes of ithomiine butterflies (Nymphalidae: Ithomiini): comparative models for mimicry genetic studies. Molecular Ecology Resources. PMID 36533297 DOI: 10.1111/1755-0998.13749 |
0.341 |
|
| 2022 |
Kim J, Lee C, Ko BJ, Yoo DA, Won S, Phillippy AM, Fedrigo O, Zhang G, Howe K, Wood J, Durbin R, Formenti G, Brown S, Cantin L, Mello CV, et al. False gene and chromosome losses in genome assemblies caused by GC content variation and repeats. Genome Biology. 23: 204. PMID 36167554 DOI: 10.1186/s13059-022-02765-0 |
0.338 |
|
| 2022 |
Nurk S, Koren S, Rhie A, Rautiainen M, Bzikadze AV, Mikheenko A, Vollger MR, Altemose N, Uralsky L, Gershman A, Aganezov S, Hoyt SJ, Diekhans M, Logsdon GA, Alonge M, ... ... Durbin R, et al. The complete sequence of a human genome. Science (New York, N.Y.). 376: 44-53. PMID 35357919 DOI: 10.1126/science.abj6987 |
0.654 |
|
| 2022 |
De Sanctis B, Money D, Pedersen MW, Durbin R. A theoretical analysis of taxonomic binning accuracy. Molecular Ecology Resources. PMID 35285150 DOI: 10.1111/1755-0998.13608 |
0.329 |
|
| 2022 |
Kwon YM, Vranken N, Hoge C, Lichak MR, Norovich AL, Francis KX, Camacho-Garcia J, Bista I, Wood J, McCarthy S, Chow W, Tan HH, Howe K, Bandara S, von Lintig J, ... ... Durbin R, et al. Genomic consequences of domestication of the Siamese fighting fish. Science Advances. 8: eabm4950. PMID 35263139 DOI: 10.1126/sciadv.abm4950 |
0.332 |
|
| 2022 |
Blaxter M, Archibald JM, Childers AK, Coddington JA, Crandall KA, Di Palma F, Durbin R, Edwards SV, Graves JAM, Hackett KJ, Hall N, Jarvis ED, Johnson RN, Karlsson EK, Kress WJ, et al. Why sequence all eukaryotes? Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 35042801 DOI: 10.1073/pnas.2115636118 |
0.305 |
|
| 2021 |
Yen EC, McCarthy SA, Galarza JA, Generalovic TN, Pelan S, Nguyen P, Meier JI, Warren IA, Mappes J, Durbin R, Jiggins CD. Correction to: A haplotype-resolved, de novo genome assembly for the wood tiger moth (Arctia plantaginis) through trio binning. Gigascience. 10. PMID 34687311 DOI: 10.1093/gigascience/giab073 |
0.337 |
|
| 2021 |
Mead D, Ogden R, Meredith A, Peniche G, Smith M, Corton C, Oliver K, Skelton J, Betteridge E, Doulcan J, Holmes N, Wright V, Loose M, Quail MA, McCarthy SA, ... ... Durbin R, et al. The genome sequence of the European golden eagle, Linnaeus 1758. Wellcome Open Research. 6: 112. PMID 34671705 DOI: 10.12688/wellcomeopenres.16631.1 |
0.354 |
|
| 2021 |
Hansen T, Fjelldal PG, Lien S, Smith M, Corton C, Oliver K, Skelton J, Betteridge E, Doulcan J, Fedrigo O, Mountcastle J, Jarvis E, McCarthy SA, Chow W, Howe K, ... ... Durbin R, et al. The genome sequence of the brown trout, Linnaeus 1758. Wellcome Open Research. 6: 108. PMID 34632087 DOI: 10.12688/wellcomeopenres.16838.1 |
0.393 |
|
| 2021 |
Rhie A, McCarthy SA, Fedrigo O, Damas J, Formenti G, Koren S, Uliano-Silva M, Chow W, Fungtammasan A, Kim J, Lee C, Ko BJ, Chaisson M, Gedman GL, Cantin LJ, ... ... Durbin R, et al. Towards complete and error-free genome assemblies of all vertebrate species. Nature. 592: 737-746. PMID 33911273 DOI: 10.1038/s41586-021-03451-0 |
0.647 |
|
| 2021 |
Pedersen MW, De Sanctis B, Saremi NF, Sikora M, Puckett EE, Gu Z, Moon KL, Kapp JD, Vinner L, Vardanyan Z, Ardelean CF, Arroyo-Cabrales J, Cahill JA, Heintzman PD, Zazula G, ... ... Durbin R, et al. Environmental genomics of Late Pleistocene black bears and giant short-faced bears. Current Biology : Cb. PMID 33878301 DOI: 10.1016/j.cub.2021.04.027 |
0.345 |
|
| 2021 |
Generalovic TN, McCarthy SA, Warren IA, Wood JMD, Torrance J, Sims Y, Quail M, Howe K, Pipan M, Durbin R, Jiggins CD. A high-quality, chromosome-level genome assembly of the Black Soldier Fly (Hermetia illucens L.). G3 (Bethesda, Md.). PMID 33734373 DOI: 10.1093/g3journal/jkab085 |
0.364 |
|
| 2021 |
Hansen T, Fjelldal PG, Lien S, Smith M, Corton C, Oliver K, Skelton J, Betteridge E, Doulcan J, Fedrigo O, Mountcastle J, Jarvis E, McCarthy SA, Chow W, Howe K, ... ... Durbin R, et al. The genome sequence of the brown trout, Salmo trutta Linnaeus 1758 Wellcome Open Research. 6: 108. DOI: 10.12688/WELLCOMEOPENRES.16838.1 |
0.393 |
|
| 2020 |
Mead D, Fingland K, Cripps R, Portela Miguez R, Smith M, Corton C, Oliver K, Skelton J, Betteridge E, Doulcan J, Quail MA, McCarthy SA, Howe K, Sims Y, Torrance J, ... ... Durbin R, et al. The genome sequence of the eastern grey squirrel, Gmelin, 1788. Wellcome Open Research. 5: 27. PMID 33215047 DOI: 10.12688/wellcomeopenres.15721.1 |
0.339 |
|
| 2020 |
Bista I, McCarthy SA, Wood J, Ning Z, Detrich Iii HW, Desvignes T, Postlethwait J, Chow W, Howe K, Torrance J, Smith M, Oliver K, Miska EA, Durbin R. The genome sequence of the channel bull blenny, (Günther, 1861). Wellcome Open Research. 5: 148. PMID 33195818 DOI: 10.12688/wellcomeopenres.16012.1 |
0.319 |
|
| 2020 |
Martiniano R, Garrison E, Jones ER, Manica A, Durbin R. Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph. Genome Biology. 21: 250. PMID 32943086 DOI: 10.1186/S13059-020-02160-7 |
0.38 |
|
| 2020 |
Yen EC, McCarthy SA, Galarza JA, Generalovic TN, Pelan S, Nguyen P, Meier JI, Warren IA, Mappes J, Durbin R, Jiggins CD. A haplotype-resolved, de novo genome assembly for the wood tiger moth (Arctia plantaginis) through trio binning. Gigascience. 9. PMID 32808665 DOI: 10.1093/Gigascience/Giaa088 |
0.444 |
|
| 2020 |
Mirauta BA, Seaton DD, Bensaddek D, Brenes A, Bonder MJ, Kilpinen H, Agu CA, Alderton A, Danecek P, Denton R, Durbin R, Gaffney DJ, Goncalves A, Halai R, et al. Population-scale proteome variation in human induced pluripotent stem cells. Elife. 9. PMID 32773033 DOI: 10.7554/Elife.57390 |
0.582 |
|
| 2020 |
Mead D, Fingland K, Cripps R, Portela Miguez R, Smith M, Corton C, Oliver K, Skelton J, Betteridge E, Dolucan J, Dudchenko O, Omer AD, Weisz D, Lieberman Aiden E, Fedrigo O, ... ... Durbin R, et al. The genome sequence of the Eurasian red squirrel, Linnaeus 1758. Wellcome Open Research. 5: 18. PMID 32587897 DOI: 10.12688/wellcomeopenres.15679.1 |
0.339 |
|
| 2020 |
Svardal H, Rusuwa B, Linderoth T, Kiran A, Charmantier A, Lattorff HMG, Cagan A, Ommeh SC, Kamng'ona A, Katongo C, Santos ME, Durbin R, Kumwenda B, Visscher PM, von der Heyden S, et al. Evolutionary genomics at the human-environment interface in Africa. Molecular Biology and Evolution. PMID 32442309 DOI: 10.1093/Molbev/Msaa132 |
0.422 |
|
| 2020 |
Mead D, Hailer F, Chadwick E, Portela Miguez R, Smith M, Corton C, Oliver K, Skelton J, Betteridge E, Doulcan JD, Dudchenko O, Omer A, Weisz D, Lieberman Aiden E, McCarthy S, ... ... Durbin R, et al. The genome sequence of the Eurasian river otter, Lutra lutra Linnaeus 1758. Wellcome Open Research. 5: 33. PMID 32258427 DOI: 10.12688/wellcomeopenres.15722.1 |
0.34 |
|
| 2020 |
Bergström A, McCarthy SA, Hui R, Almarri MA, Ayub Q, Danecek P, Chen Y, Felkel S, Hallast P, Kamm J, Blanché H, Deleuze JF, Cann H, Mallick S, Reich D, ... ... Durbin R, et al. Insights into human genetic variation and population history from 929 diverse genomes. Science (New York, N.Y.). 367. PMID 32193295 DOI: 10.1126/Science.Aay5012 |
0.437 |
|
| 2020 |
Guan D, McCarthy SA, Wood J, Howe K, Wang Y, Durbin R. Identifying and removing haplotypic duplication in primary genome assemblies. Bioinformatics (Oxford, England). PMID 31971576 DOI: 10.1093/Bioinformatics/Btaa025 |
0.452 |
|
| 2020 |
Mirauta BA, Seaton DD, Bensaddek D, Brenes A, Bonder MJ, Kilpinen H, Agu CA, Alderton A, Danecek P, Denton R, Durbin R, Gaffney DJ, Goncalves A, Halai R, Harper S, et al. Author response: Population-scale proteome variation in human induced pluripotent stem cells Elife. DOI: 10.7554/Elife.57390.Sa2 |
0.48 |
|
| 2020 |
Mead D, Fingland K, Cripps R, Portela Miguez R, Smith M, Corton C, Oliver K, Skelton J, Betteridge E, Doulcan J, Quail MA, McCarthy SA, Howe K, Sims Y, Torrance J, ... ... Durbin R, et al. The genome sequence of the eastern grey squirrel, Sciurus carolinensis Gmelin, 1788 Wellcome Open Research. 5: 27. DOI: 10.12688/wellcomeopenres.15721.1 |
0.339 |
|
| 2020 |
Mead D, Fingland K, Cripps R, Portela Miguez R, Smith M, Corton C, Oliver K, Skelton J, Betteridge E, Dolucan J, Dudchenko O, Omer AD, Weisz D, Lieberman Aiden E, Fedrigo O, ... ... Durbin R, et al. The genome sequence of the Eurasian red squirrel, Sciurus vulgaris Linnaeus 1758 Wellcome Open Research. 5: 18. DOI: 10.12688/wellcomeopenres.15679.1 |
0.34 |
|
| 2019 |
Garg S, Aach J, Li H, Durbin R, Church G. A haplotype-aware de novo assembly of related individuals using pedigree sequence graph. Bioinformatics (Oxford, England). PMID 31860070 DOI: 10.1093/Bioinformatics/Btz942 |
0.491 |
|
| 2019 |
Svardal H, Quah FX, Malinsky M, Ngatunga BP, Miska EA, Salzburger W, Genner MJ, Turner GF, Durbin R. Ancestral hybridisation facilitated species diversification in the Lake Malawi cichlid fish adaptive radiation. Molecular Biology and Evolution. PMID 31821500 DOI: 10.1093/Molbev/Msz294 |
0.383 |
|
| 2019 |
Sirén J, Garrison E, Novak AM, Paten B, Durbin R. Haplotype-aware graph indexes. Bioinformatics (Oxford, England). PMID 31406990 DOI: 10.1093/Bioinformatics/Btz575 |
0.525 |
|
| 2019 |
Vigilante A, Laddach A, Moens N, Meleckyte R, Leha A, Ghahramani A, Culley OJ, Kathuria A, Hurling C, Vickers A, Wiseman E, Tewary M, Zandstra PW, Durbin R, et al. Identifying Extrinsic versus Intrinsic Drivers of Variation in Cell Behavior in Human iPSC Lines from Healthy Donors. Cell Reports. 26: 2078-2087.e3. PMID 30784590 DOI: 10.1016/J.Celrep.2019.01.094 |
0.529 |
|
| 2019 |
Kingan SB, Heaton H, Cudini J, Lambert CC, Baybayan P, Galvin BD, Durbin R, Korlach J, Lawniczak MKN. A High-Quality Genome Assembly from a Single Mosquito Using PacBio Sequencing. Genes. 10. PMID 30669388 DOI: 10.3390/Genes10010062 |
0.485 |
|
| 2018 |
Malinsky M, Svardal H, Tyers AM, Miska EA, Genner MJ, Turner GF, Durbin R. Whole-genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow. Nature Ecology & Evolution. 2: 1940-1955. PMID 30455444 DOI: 10.1038/S41559-018-0717-X |
0.376 |
|
| 2018 |
Lilue J, Doran AG, Fiddes IT, Abrudan M, Armstrong J, Bennett R, Chow W, Collins J, Collins S, Czechanski A, Danecek P, Diekhans M, Dolle DD, Dunn M, Durbin R, et al. Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci. Nature Genetics. PMID 30275530 DOI: 10.1038/S41588-018-0223-8 |
0.659 |
|
| 2018 |
Skov L, Hui R, Shchur V, Hobolth A, Scally A, Schierup MH, Durbin R. Detecting archaic introgression using an unadmixed outgroup. Plos Genetics. 14: e1007641. PMID 30226838 DOI: 10.1371/Journal.Pgen.1007641 |
0.399 |
|
| 2018 |
Garrison E, Sirén J, Novak AM, Hickey G, Eizenga JM, Dawson ET, Jones W, Garg S, Markello C, Lin MF, Paten B, Durbin R. Variation graph toolkit improves read mapping by representing genetic variation in the reference. Nature Biotechnology. PMID 30125266 DOI: 10.1038/Nbt.4227 |
0.652 |
|
| 2018 |
Bonfield JK, McCarthy SA, Durbin R. Crumble: reference free lossy compression of sequence quality values. Bioinformatics (Oxford, England). PMID 29992288 DOI: 10.1093/Bioinformatics/Bty608 |
0.325 |
|
| 2018 |
Garg S, Rautiainen M, Novak AM, Garrison E, Durbin R, Marschall T. A graph-based approach to diploid genome assembly. Bioinformatics (Oxford, England). 34: i105-i114. PMID 29949989 DOI: 10.1093/bioinformatics/bty279 |
0.342 |
|
| 2018 |
de Barros Damgaard P, Martiniano R, Kamm J, Moreno-Mayar JV, Kroonen G, Peyrot M, Barjamovic G, Rasmussen S, Zacho C, Baimukhanov N, Zaibert V, Merz V, Biddanda A, Merz I, Loman V, ... ... Durbin R, et al. The first horse herders and the impact of early Bronze Age steppe expansions into Asia. Science (New York, N.Y.). PMID 29743352 DOI: 10.1126/Science.Aar7711 |
0.305 |
|
| 2018 |
Lewin HA, Robinson GE, Kress WJ, Baker WJ, Coddington J, Crandall KA, Durbin R, Edwards SV, Forest F, Gilbert MTP, Goldstein MM, Grigoriev IV, Hackett KJ, Haussler D, Jarvis ED, et al. Earth BioGenome Project: Sequencing life for the future of life. Proceedings of the National Academy of Sciences of the United States of America. 115: 4325-4333. PMID 29686065 DOI: 10.1073/Pnas.1720115115 |
0.373 |
|
| 2017 |
Xue Y, Mezzavilla M, Haber M, McCarthy S, Chen Y, Narasimhan V, Gilly A, Ayub Q, Colonna V, Southam L, Finan C, Massaia A, Chheda H, Palta P, Ritchie G, ... ... Durbin R, et al. Enrichment of low-frequency functional variants revealed by whole-genome sequencing of multiple isolated European populations. Nature Communications. 8: 15927. PMID 28643794 DOI: 10.1038/Ncomms15927 |
0.426 |
|
| 2017 |
Giordano F, Aigrain L, Quail MA, Coupland P, Bonfield JK, Davies RM, Tischler G, Jackson DK, Keane TM, Li J, Yue JX, Liti G, Durbin R, Ning Z. De novo yeast genome assemblies from MinION, PacBio and MiSeq platforms. Scientific Reports. 7: 3935. PMID 28638050 DOI: 10.1038/S41598-017-03996-Z |
0.485 |
|
| 2017 |
Kilpinen H, Goncalves A, Leha A, Afzal V, Alasoo K, Ashford S, Bala S, Bensaddek D, Casale FP, Culley OJ, Danecek P, Faulconbridge A, Harrison PW, Kathuria A, McCarthy D, ... ... Durbin R, et al. Corrigendum: Common genetic variation drives molecular heterogeneity in human iPSCs. Nature. PMID 28614302 DOI: 10.1038/Nature23012 |
0.51 |
|
| 2017 |
Tachmazidou I, Süveges D, Min JL, Ritchie GRS, Steinberg J, Walter K, Iotchkova V, Schwartzentruber J, Huang J, Memari Y, McCarthy S, Crawford AA, Bombieri C, Cocca M, Farmaki AE, ... ... Durbin R, et al. Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits. American Journal of Human Genetics. PMID 28552196 DOI: 10.1016/J.Ajhg.2017.04.014 |
0.425 |
|
| 2017 |
Kilpinen H, Goncalves A, Leha A, Afzal V, Alasoo K, Ashford S, Bala S, Bensaddek D, Casale FP, Culley OJ, Danecek P, Faulconbridge A, Harrison PW, Kathuria A, McCarthy D, ... ... Durbin R, et al. Common genetic variation drives molecular heterogeneity in human iPSCs. Nature. PMID 28489815 DOI: 10.1038/Nature22403 |
0.562 |
|
| 2017 |
Yue JX, Li J, Aigrain L, Hallin J, Persson K, Oliver K, Bergström A, Coupland P, Warringer J, Lagomarsino MC, Fischer G, Durbin R, Liti G. Contrasting evolutionary genome dynamics between domesticated and wild yeasts. Nature Genetics. PMID 28416820 DOI: 10.1038/Ng.3847 |
0.463 |
|
| 2017 |
Schneider VA, Graves-Lindsay T, Howe K, Bouk N, Chen HC, Kitts PA, Murphy TD, Pruitt KD, Thibaud-Nissen F, Albracht D, Fulton RS, Kremitzki M, Magrini V, Markovic C, McGrath S, ... ... Durbin R, et al. Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly. Genome Research. PMID 28396521 DOI: 10.1101/Gr.213611.116 |
0.49 |
|
| 2017 |
Chheda H, Palta P, Pirinen M, McCarthy S, Walter K, Koskinen S, Salomaa V, Daly M, Durbin R, Palotie A, Aittokallio T, Ripatti S. Whole-genome view of the consequences of a population bottleneck using 2926 genome sequences from Finland and United Kingdom. European Journal of Human Genetics : Ejhg. PMID 28145424 DOI: 10.1038/Ejhg.2016.205 |
0.461 |
|
| 2017 |
Dawson ET, Garrison E, Novak A, Paten B, Eizinga J, Hickey G, Chanock S, Durbin R. Abstract 3570: Germline structural variant detection with variation graphs Cancer Research. 77: 3570-3570. DOI: 10.1158/1538-7445.Am2017-3570 |
0.585 |
|
| 2016 |
Dolle DD, Liu Z, Cotten ML, Simpson JT, Iqbal Z, Durbin R, McCarthy SA, Keane TM. Using reference-free compressed data structures to analyse sequencing reads from thousands of human genomes. Genome Research. PMID 27986821 DOI: 10.1101/Gr.211748.116 |
0.508 |
|
| 2016 |
Malaspinas AS, Westaway MC, Muller C, Sousa VC, Lao O, Alves I, Bergström A, Athanasiadis G, Cheng JY, Crawford JE, Heupink TH, Macholdt E, Peischl S, Rasmussen S, Schiffels S, ... ... Durbin R, et al. A genomic history of Aboriginal Australia. Nature. PMID 27654914 DOI: 10.1038/Nature18299 |
0.341 |
|
| 2016 |
McCarthy S, Das S, Kretzschmar W, Delaneau O, Wood AR, Teumer A, Kang HM, Fuchsberger C, Danecek P, Sharp K, Luo Y, Sidore C, Kwong A, Timpson N, Koskinen S, ... ... Durbin R, et al. A reference panel of 64,976 haplotypes for genotype imputation. Nature Genetics. PMID 27548312 DOI: 10.1038/Ng.3643 |
0.381 |
|
| 2016 |
Page A, Baker D, Bobrow M, Boycott K, Burn J, Chanock S, Donnelly S, Dove E, Durbin R, Dyke S, Fiume M, Flicek P, Glazer D, Goodhand P, Haussler D, et al. A federated ecosystem for sharing genomic, clinical data Science. PMID 27284183 DOI: 10.1126/Science.Aaf6162 |
0.399 |
|
| 2016 |
Danecek P, McCarthy SA, Durbin R. A Method for Checking Genomic Integrity in Cultured Cell Lines from SNP Genotyping Data. Plos One. 11: e0155014. PMID 27176002 DOI: 10.1371/Journal.Pone.0155014 |
0.361 |
|
| 2016 |
Jeroncic A, Memari Y, Ritchie GR, Hendricks AE, Kolb-Kokocinski A, Matchan A, Vitart V, Hayward C, Kolcic I, Glodzik D, Wright AF, Rudan I, Campbell H, Durbin R, Polašek O, et al. Whole-exome sequencing in an isolated population from the Dalmatian island of Vis. European Journal of Human Genetics : Ejhg. PMID 27049301 DOI: 10.1038/Ejhg.2016.23 |
0.431 |
|
| 2016 |
Narasimhan VM, Hunt KA, Mason D, Baker CL, Karczewski KJ, Barnes MR, Barnett AH, Bates C, Bellary S, Bockett NA, Giorda K, Griffiths CJ, Hemingway H, Jia Z, Kelly MA, ... ... Durbin R, et al. Health and population effects of rare gene knockouts in adult humans with related parents. Science (New York, N.Y.). PMID 26940866 DOI: 10.1126/Science.Aac8624 |
0.395 |
|
| 2016 |
Narasimhan V, Danecek P, Scally A, Xue Y, Tyler-Smith C, Durbin R. BCFtools/RoH: a hidden Markov model approach for detecting autozygosity from next-generation sequencing data. Bioinformatics (Oxford, England). PMID 26826718 DOI: 10.1093/Bioinformatics/Btw044 |
0.483 |
|
| 2016 |
Schiffels S, Haak W, Paajanen P, Llamas B, Popescu E, Loe L, Clarke R, Lyons A, Mortimer R, Sayer D, Tyler-Smith C, Cooper A, Durbin R. Iron Age and Anglo-Saxon genomes from East England reveal British migration history. Nature Communications. 7: 10408. PMID 26783965 DOI: 10.1038/Ncomms10408 |
0.343 |
|
| 2015 |
Malinsky M, Challis RJ, Tyers AM, Schiffels S, Terai Y, Ngatunga BP, Miska EA, Durbin R, Genner MJ, Turner GF. Genomic islands of speciation separate cichlid ecomorphs in an East African crater lake. Science (New York, N.Y.). 350: 1493-8. PMID 26680190 DOI: 10.1126/Science.Aac9927 |
0.443 |
|
| 2015 |
Auton A, Brooks LD, Durbin RM, Garrison EP, Kang HM, Korbel JO, Marchini JL, McCarthy S, McVean GA, Abecasis GR. A global reference for human genetic variation. Nature. 526: 68-74. PMID 26432245 DOI: 10.1038/Nature15393 |
0.472 |
|
| 2015 |
Huang J, Howie B, McCarthy S, Memari Y, Walter K, Min JL, Danecek P, Malerba G, Trabetti E, Zheng HF, Gambaro G, Richards JB, Durbin R, Timpson NJ, et al. Improved imputation of low-frequency and rare variants using the UK10K haplotype reference panel. Nature Communications. 6: 8111. PMID 26368830 DOI: 10.1038/Ncomms9111 |
0.447 |
|
| 2015 |
Walter K, Min JL, Huang J, Crooks L, Memari Y, McCarthy S, Perry JR, Xu C, Futema M, Lawson D, Iotchkova V, Schiffels S, Hendricks AE, Danecek P, ... ... Durbin R, et al. The UK10K project identifies rare variants in health and disease. Nature. 526: 82-90. PMID 26367797 DOI: 10.1038/Nature14962 |
0.433 |
|
| 2015 |
Zheng HF, Forgetta V, Hsu YH, Estrada K, Rosello-Diez A, Leo PJ, Dahia CL, Park-Min KH, Tobias JH, Kooperberg C, Kleinman A, Styrkarsdottir U, Liu CT, Uggla C, Evans DS, ... ... Durbin R, et al. Whole-genome sequencing identifies EN1 as a determinant of bone density and fracture. Nature. PMID 26367794 DOI: 10.1038/Nature14878 |
0.388 |
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| 2015 |
Raghavan M, Steinrücken M, Harris K, Schiffels S, Rasmussen S, DeGiorgio M, Albrechtsen A, Valdiosera C, Ávila-Arcos MC, Malaspinas AS, Eriksson A, Moltke I, Metspalu M, Homburger JR, Wall J, ... ... Durbin R, et al. Genomic evidence for the Pleistocene and recent population history of Native Americans. Science (New York, N.Y.). PMID 26198033 DOI: 10.1126/Science.Aab3884 |
0.335 |
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| 2015 |
Kaiser VB, Svinti V, Prendergast JG, Chau YY, Campbell A, Patarcic I, Barroso I, Joshi PK, Hastie ND, Miljkovic A, Taylor MS, Enroth S, Memari Y, ... ... Durbin R, et al. Homozygous loss-of-function variants in European cosmopolitan and isolate populations. Human Molecular Genetics. PMID 26173456 DOI: 10.1093/Hmg/Ddv272 |
0.356 |
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| 2015 |
Pagani L, Schiffels S, Gurdasani D, Danecek P, Scally A, Chen Y, Xue Y, Haber M, Ekong R, Oljira T, Mekonnen E, Luiselli D, Bradman N, Bekele E, Zalloua P, ... Durbin R, et al. Tracing the route of modern humans out of Africa by using 225 human genome sequences from Ethiopians and Egyptians. American Journal of Human Genetics. 96: 986-91. PMID 26027499 DOI: 10.1016/J.Ajhg.2015.04.019 |
0.416 |
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| 2015 |
Taylor PN, Porcu E, Chew S, Campbell PJ, Traglia M, Brown SJ, Mullin BH, Shihab HA, Min J, Walter K, Memari Y, Huang J, Barnes MR, Beilby JP, Charoen P, ... ... Durbin R, et al. Erratum: Whole-genome sequence-based analysis of thyroid function. Nature Communications. 6: 7172. PMID 25989729 DOI: 10.1038/Ncomms8172 |
0.445 |
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| 2015 |
Ding Z, Ni Y, Timmer SW, Lee BK, Battenhouse A, Louzada S, Yang F, Dunham I, Crawford GE, Lieb JD, Durbin R, Iyer VR, Birney E. Correction: Quantitative genetics of CTCF binding reveal local sequence effects and different modes of X-chromosome association. Plos Genetics. 11: e1005177. PMID 25919664 DOI: 10.1371/Journal.Pgen.1005177 |
0.712 |
|
| 2015 |
Taylor PN, Porcu E, Chew S, Campbell PJ, Traglia M, Brown SJ, Mullin BH, Shihab HA, Min J, Walter K, Memari Y, Huang J, Barnes MR, Beilby JP, Charoen P, ... ... Durbin R, et al. Whole-genome sequence-based analysis of thyroid function. Nature Communications. 6: 5681. PMID 25743335 DOI: 10.1038/Ncomms6681 |
0.44 |
|
| 2015 |
Jeffares DC, Rallis C, Rieux A, Speed D, P?evorovský M, Mourier T, Marsellach FX, Iqbal Z, Lau W, Cheng TM, Pracana R, Mülleder M, Lawson JL, Chessel A, Bala S, ... ... Durbin R, et al. The genomic and phenotypic diversity of Schizosaccharomyces pombe. Nature Genetics. 47: 235-41. PMID 25665008 DOI: 10.1038/Ng.3215 |
0.45 |
|
| 2015 |
Church DM, Schneider VA, Steinberg KM, Schatz MC, Quinlan AR, Chin CS, Kitts PA, Aken B, Marth GT, Hoffman MM, Herrero J, Mendoza ML, Durbin R, Flicek P. Extending reference assembly models. Genome Biology. 16: 13. PMID 25651527 DOI: 10.1186/S13059-015-0587-3 |
0.716 |
|
| 2015 |
Buil A, Brown AA, Lappalainen T, Viñuela A, Davies MN, Zheng HF, Richards JB, Glass D, Small KS, Durbin R, Spector TD, Dermitzakis ET. Gene-gene and gene-environment interactions detected by transcriptome sequence analysis in twins. Nature Genetics. 47: 88-91. PMID 25436857 DOI: 10.1038/Ng.3162 |
0.35 |
|
| 2015 |
Walter K, Min JL, Huang J, Crooks L, Memari Y, McCarthy S, Perry JRB, Xu C, Futema M, Lawson D, Iotchkova V, Schiffels S, Hendricks AE, Danecek P, Li R, ... ... Durbin R, et al. The UK10K project identifies rare variants in health and disease Nature. 526: 82-89. DOI: 10.1038/nature14962 |
0.414 |
|
| 2014 |
Ding Z, Ni Y, Timmer SW, Lee BK, Battenhouse A, Louzada S, Yang F, Dunham I, Crawford GE, Lieb JD, Durbin R, Iyer VR, Birney E. Quantitative genetics of CTCF binding reveal local sequence effects and different modes of X-chromosome association. Plos Genetics. 10: e1004798. PMID 25411781 DOI: 10.1371/Journal.Pgen.1004798 |
0.703 |
|
| 2014 |
Timpson NJ, Walter K, Min JL, Tachmazidou I, Malerba G, Shin SY, Chen L, Futema M, Southam L, Iotchkova V, Cocca M, Huang J, Memari Y, McCarthy S, Danecek P, ... ... Durbin R, et al. A rare variant in APOC3 is associated with plasma triglyceride and VLDL levels in Europeans. Nature Communications. 5: 4871. PMID 25225788 DOI: 10.1038/Ncomms5871 |
0.389 |
|
| 2014 |
Lim ET, Würtz P, Havulinna AS, Palta P, Tukiainen T, Rehnström K, Esko T, Mägi R, Inouye M, Lappalainen T, Chan Y, Salem RM, Lek M, Flannick J, Sim X, ... ... Durbin R, et al. Distribution and medical impact of loss-of-function variants in the Finnish founder population. Plos Genetics. 10: e1004494. PMID 25078778 DOI: 10.1371/Journal.Pgen.1004494 |
0.373 |
|
| 2014 |
Colonna V, Ayub Q, Chen Y, Pagani L, Luisi P, Pybus M, Garrison E, Xue Y, Tyler-Smith C, Abecasis GR, Auton A, Brooks LD, DePristo MA, Durbin RM, et al. Human genomic regions with exceptionally high levels of population differentiation identified from 911 whole-genome sequences. Genome Biology. 15: R88. PMID 24980144 DOI: 10.1186/Gb-2014-15-6-R88 |
0.33 |
|
| 2014 |
Schiffels S, Durbin R. Inferring human population size and separation history from multiple genome sequences. Nature Genetics. 46: 919-25. PMID 24952747 DOI: 10.1038/Ng.3015 |
0.428 |
|
| 2014 |
Brown AA, Buil A, Viñuela A, Lappalainen T, Zheng HF, Richards JB, Small KS, Spector TD, Dermitzakis ET, Durbin R. Genetic interactions affecting human gene expression identified by variance association mapping. Elife. 3: e01381. PMID 24771767 DOI: 10.7554/Elife.01381 |
0.339 |
|
| 2014 |
Ding Z, Mangino M, Aviv A, Spector T, Durbin R. Estimating telomere length from whole genome sequence data. Nucleic Acids Research. 42: e75. PMID 24609383 DOI: 10.1093/Nar/Gku181 |
0.41 |
|
| 2014 |
Bergström A, Simpson JT, Salinas F, Barré B, Parts L, Zia A, Nguyen Ba AN, Moses AM, Louis EJ, Mustonen V, Warringer J, Durbin R, Liti G. A high-definition view of functional genetic variation from natural yeast genomes. Molecular Biology and Evolution. 31: 872-88. PMID 24425782 DOI: 10.1093/Molbev/Msu037 |
0.456 |
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| 2014 |
Durbin R. Efficient haplotype matching and storage using the positional Burrows-Wheeler transform (PBWT). Bioinformatics (Oxford, England). 30: 1266-72. PMID 24413527 DOI: 10.1093/Bioinformatics/Btu014 |
0.313 |
|
| 2013 |
Cubillos FA, Parts L, Salinas F, Bergström A, Scovacricchi E, Zia A, Illingworth CJ, Mustonen V, Ibstedt S, Warringer J, Louis EJ, Durbin R, Liti G. High-resolution mapping of complex traits with a four-parent advanced intercross yeast population. Genetics. 195: 1141-55. PMID 24037264 DOI: 10.1534/Genetics.113.155515 |
0.359 |
|
| 2013 |
Bradnam KR, Fass JN, Alexandrov A, Baranay P, Bechner M, Birol I, Boisvert S, Chapman JA, Chapuis G, Chikhi R, Chitsaz H, Chou WC, Corbeil J, Del Fabbro C, Docking TR, ... Durbin R, et al. Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. Gigascience. 2: 10. PMID 23870653 DOI: 10.1186/2047-217X-2-10 |
0.677 |
|
| 2013 |
Scally A, Yngvadottir B, Xue Y, Ayub Q, Durbin R, Tyler-Smith C. A genome-wide survey of genetic variation in gorillas using reduced representation sequencing. Plos One. 8: e65066. PMID 23750230 DOI: 10.1371/Journal.Pone.0065066 |
0.4 |
|
| 2012 |
Howe K, Davis P, Paulini M, Tuli MA, Williams G, Yook K, Durbin R, Kersey P, Sternberg PW. WormBase: Annotating many nematode genomes. Worm. 1: 15-21. PMID 24058818 DOI: 10.4161/worm.19574 |
0.408 |
|
| 2012 |
Abecasis GR, Auton A, Brooks LD, DePristo MA, Durbin RM, Handsaker RE, Kang HM, Marth GT, McVean GA. An integrated map of genetic variation from 1,092 human genomes. Nature. 491: 56-65. PMID 23128226 DOI: 10.1038/Nature11632 |
0.46 |
|
| 2012 |
Grundberg E, Small KS, Hedman Ã…K, Nica AC, Buil A, Keildson S, Bell JT, Yang TP, Meduri E, Barrett A, Nisbett J, Sekowska M, Wilk A, Shin SY, Glass D, ... ... Durbin R, et al. Mapping cis- and trans-regulatory effects across multiple tissues in twins. Nature Genetics. 44: 1084-9. PMID 22941192 DOI: 10.1038/Ng.2394 |
0.314 |
|
| 2012 |
Stranger BE, Montgomery SB, Dimas AS, Parts L, Stegle O, Ingle CE, Sekowska M, Smith GD, Evans D, Gutierrez-Arcelus M, Price A, Raj T, Nisbett J, Nica AC, Beazley C, ... Durbin R, et al. Patterns of cis regulatory variation in diverse human populations. Plos Genetics. 8: e1002639. PMID 22532805 DOI: 10.1371/Journal.Pgen.1002639 |
0.33 |
|
| 2012 |
Danecek P, Nellåker C, McIntyre RE, Buendia-Buendia JE, Bumpstead S, Ponting CP, Flint J, Durbin R, Keane TM, Adams DJ. High levels of RNA-editing site conservation amongst 15 laboratory mouse strains. Genome Biology. 13: 26. PMID 22524474 DOI: 10.1186/Gb-2012-13-4-R26 |
0.402 |
|
| 2012 |
Scally A, Dutheil JY, Hillier LW, Jordan GE, Goodhead I, Herrero J, Hobolth A, Lappalainen T, Mailund T, Marques-Bonet T, McCarthy S, Montgomery SH, Schwalie PC, Tang YA, Ward MC, ... ... Durbin R, et al. Insights into hominid evolution from the gorilla genome sequence. Nature. 483: 169-75. PMID 22398555 DOI: 10.1038/Nature10842 |
0.489 |
|
| 2012 |
Simpson JT, Durbin R. Efficient de novo assembly of large genomes using compressed data structures. Genome Research. 22: 549-56. PMID 22156294 DOI: 10.1101/Gr.126953.111 |
0.462 |
|
| 2012 |
Flicek P, Amode MR, Barrell D, Beal K, Brent S, Carvalho-Silva D, Clapham P, Coates G, Fairley S, Fitzgerald S, Gil L, Gordon L, Hendrix M, Hourlier T, Johnson N, ... ... Durbin R, et al. Ensembl 2012. Nucleic Acids Research. 40: D84-90. PMID 22086963 DOI: 10.1093/nar/gkr991 |
0.54 |
|
| 2012 |
Yook K, Harris TW, Bieri T, Cabunoc A, Chan J, Chen WJ, Davis P, de la Cruz N, Duong A, Fang R, Ganesan U, Grove C, Howe K, Kadam S, Kishore R, ... ... Durbin R, et al. WormBase 2012: more genomes, more data, new website. Nucleic Acids Research. 40: D735-41. PMID 22067452 DOI: 10.1093/Nar/Gkr954 |
0.33 |
|
| 2011 |
Palin K, Campbell H, Wright AF, Wilson JF, Durbin R. Identity-by-descent-based phasing and imputation in founder populations using graphical models. Genetic Epidemiology. 35: 853-60. PMID 22006673 DOI: 10.1002/Gepi.20635 |
0.34 |
|
| 2011 |
Earl D, Bradnam K, St John J, Darling A, Lin D, Fass J, Yu HO, Buffalo V, Zerbino DR, Diekhans M, Nguyen N, Ariyaratne PN, Sung WK, Ning Z, Haimel M, ... ... Durbin R, et al. Assemblathon 1: a competitive assessment of de novo short read assembly methods. Genome Research. 21: 2224-41. PMID 21926179 DOI: 10.1101/Gr.126599.111 |
0.768 |
|
| 2011 |
Keane TM, Goodstadt L, Danecek P, White MA, Wong K, Yalcin B, Heger A, Agam A, Slater G, Goodson M, Furlotte NA, Eskin E, Nellåker C, Whitley H, Cleak J, ... ... Durbin R, et al. Mouse genomic variation and its effect on phenotypes and gene regulation. Nature. 477: 289-94. PMID 21921910 DOI: 10.1038/Nature10413 |
0.639 |
|
| 2011 |
Li H, Durbin R. Inference of human population history from individual whole-genome sequences. Nature. 475: 493-6. PMID 21753753 DOI: 10.1038/Nature10231 |
0.33 |
|
| 2011 |
Warringer J, Zörgö E, Cubillos FA, Zia A, Gjuvsland A, Simpson JT, Forsmark A, Durbin R, Omholt SW, Louis EJ, Liti G, Moses A, Blomberg A. Trait variation in yeast is defined by population history. Plos Genetics. 7: e1002111. PMID 21698134 DOI: 10.1371/Journal.Pgen.1002111 |
0.34 |
|
| 2011 |
Danecek P, Auton A, Abecasis G, Albers CA, Banks E, DePristo MA, Handsaker RE, Lunter G, Marth GT, Sherry ST, McVean G, Durbin R. The variant call format and VCFtools. Bioinformatics (Oxford, England). 27: 2156-8. PMID 21653522 DOI: 10.1093/Bioinformatics/Btr330 |
0.407 |
|
| 2011 |
Parts L, Cubillos FA, Warringer J, Jain K, Salinas F, Bumpstead SJ, Molin M, Zia A, Simpson JT, Quail MA, Moses A, Louis EJ, Durbin R, Liti G. Revealing the genetic structure of a trait by sequencing a population under selection. Genome Research. 21: 1131-8. PMID 21422276 DOI: 10.1101/Gr.116731.110 |
0.369 |
|
| 2011 |
Parts L, Stegle O, Winn J, Durbin R. Joint genetic analysis of gene expression data with inferred cellular phenotypes. Plos Genetics. 7: e1001276. PMID 21283789 DOI: 10.1371/Journal.Pgen.1001276 |
0.31 |
|
| 2011 |
Flicek P, Amode MR, Barrell D, Beal K, Brent S, Chen Y, Clapham P, Coates G, Fairley S, Fitzgerald S, Gordon L, Hendrix M, Hourlier T, Johnson N, Kähäri A, ... ... Durbin R, et al. Ensembl 2011. Nucleic Acids Research. 39: D800-6. PMID 21045057 DOI: 10.1093/nar/gkq1064 |
0.567 |
|
| 2011 |
Le SQ, Durbin R. SNP detection and genotyping from low-coverage sequencing data on multiple diploid samples. Genome Research. 21: 952-60. PMID 20980557 DOI: 10.1101/Gr.113084.110 |
0.433 |
|
| 2011 |
Albers CA, Lunter G, MacArthur DG, McVean G, Ouwehand WH, Durbin R. Dindel: accurate indel calls from short-read data. Genome Research. 21: 961-73. PMID 20980555 DOI: 10.1101/Gr.112326.110 |
0.466 |
|
| 2010 |
Abecasis GR, Altshuler D, Auton A, Brooks LD, Durbin RM, Gibbs RA, Hurles ME, McVean GA. A map of human genome variation from population-scale sequencing. Nature. 467: 1061-73. PMID 20981092 DOI: 10.1038/Nature09534 |
0.517 |
|
| 2010 |
Simpson JT, Durbin R. Efficient construction of an assembly string graph using the FM-index. Bioinformatics (Oxford, England). 26: i367-73. PMID 20529929 DOI: 10.1093/Bioinformatics/Btq217 |
0.37 |
|
| 2010 |
Stegle O, Parts L, Durbin R, Winn J. A Bayesian framework to account for complex non-genetic factors in gene expression levels greatly increases power in eQTL studies. Plos Computational Biology. 6: e1000770. PMID 20463871 DOI: 10.1371/Journal.Pcbi.1000770 |
0.4 |
|
| 2010 |
Neumann B, Walter T, Hériché JK, Bulkescher J, Erfle H, Conrad C, Rogers P, Poser I, Held M, Liebel U, Cetin C, Sieckmann F, Pau G, Kabbe R, Wünsche A, ... ... Durbin R, et al. Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes. Nature. 464: 721-7. PMID 20360735 DOI: 10.1038/Nature08869 |
0.409 |
|
| 2010 |
Simpson JT, McIntyre RE, Adams DJ, Durbin R. Copy number variant detection in inbred strains from short read sequence data. Bioinformatics (Oxford, England). 26: 565-7. PMID 20022973 DOI: 10.1093/Bioinformatics/Btp693 |
0.464 |
|
| 2010 |
Harris TW, Antoshechkin I, Bieri T, Blasiar D, Chan J, Chen WJ, De La Cruz N, Davis P, Duesbury M, Fang R, Fernandes J, Han M, Kishore R, Lee R, Müller HM, ... ... Durbin R, et al. WormBase: a comprehensive resource for nematode research. Nucleic Acids Research. 38: D463-7. PMID 19910365 DOI: 10.1093/Nar/Gkp952 |
0.411 |
|
| 2010 |
Flicek P, Aken BL, Ballester B, Beal K, Bragin E, Brent S, Chen Y, Clapham P, Coates G, Fairley S, Fitzgerald S, Fernandez-Banet J, Gordon L, Gräf S, Haider S, ... ... Durbin R, et al. Ensembl's 10th year. Nucleic Acids Research. 38: D557-62. PMID 19906699 DOI: 10.1093/Nar/Gkp972 |
0.651 |
|
| 2009 |
Sudbery I, Stalker J, Simpson JT, Keane T, Rust AG, Hurles ME, Walter K, Lynch D, Teboul L, Brown SD, Li H, Ning Z, Nadeau JH, Croniger CM, Durbin R, et al. Deep short-read sequencing of chromosome 17 from the mouse strains A/J and CAST/Ei identifies significant germline variation and candidate genes that regulate liver triglyceride levels. Genome Biology. 10: R112. PMID 19825173 DOI: 10.1186/Gb-2009-10-10-R112 |
0.448 |
|
| 2009 |
Birney E, Hudson TJ, Green ED, Gunter C, Eddy S, Rogers J, Harris JR, Ehrlich SD, Apweiler R, Austin CP, Berglund L, Bobrow M, Bountra C, Brookes AJ, ... ... Durbin R, et al. Prepublication data sharing. Nature. 461: 168-70. PMID 19741685 DOI: 10.1038/461168A |
0.548 |
|
| 2009 |
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R. The Sequence Alignment/Map format and SAMtools. Bioinformatics (Oxford, England). 25: 2078-9. PMID 19505943 DOI: 10.1093/Bioinformatics/Btp352 |
0.425 |
|
| 2009 |
Pruitt KD, Harrow J, Harte RA, Wallin C, Diekhans M, Maglott DR, Searle S, Farrell CM, Loveland JE, Ruef BJ, Hart E, Suner MM, Landrum MJ, Aken B, Ayling S, ... ... Durbin R, et al. The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes. Genome Research. 19: 1316-23. PMID 19498102 DOI: 10.1101/Gr.080531.108 |
0.632 |
|
| 2009 |
Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics (Oxford, England). 25: 1754-60. PMID 19451168 DOI: 10.1093/Bioinformatics/Btp324 |
0.346 |
|
| 2009 |
Liti G, Carter DM, Moses AM, Warringer J, Parts L, James SA, Davey RP, Roberts IN, Burt A, Koufopanou V, Tsai IJ, Bergman CM, Bensasson D, O'Kelly MJ, van Oudenaarden A, ... ... Durbin R, et al. Population genomics of domestic and wild yeasts. Nature. 458: 337-41. PMID 19212322 DOI: 10.1038/Nature07743 |
0.465 |
|
| 2009 |
Hubbard TJ, Aken BL, Ayling S, Ballester B, Beal K, Bragin E, Brent S, Chen Y, Clapham P, Clarke L, Coates G, Fairley S, Fitzgerald S, Fernandez-Banet J, Gordon L, ... ... Durbin R, et al. Ensembl 2009. Nucleic Acids Research. 37: D690-7. PMID 19033362 DOI: 10.1093/nar/gkn828 |
0.591 |
|
| 2009 |
Vilella AJ, Severin J, Ureta-Vidal A, Heng L, Durbin R, Birney E. EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates. Genome Research. 19: 327-35. PMID 19029536 DOI: 10.1101/Gr.073585.107 |
0.564 |
|
| 2008 |
Quail MA, Kozarewa I, Smith F, Scally A, Stephens PJ, Durbin R, Swerdlow H, Turner DJ. A large genome center's improvements to the Illumina sequencing system. Nature Methods. 5: 1005-10. PMID 19034268 DOI: 10.1038/Nmeth.1270 |
0.472 |
|
| 2008 |
Wang J, Wang W, Li R, Li Y, Tian G, Goodman L, Fan W, Zhang J, Li J, Zhang J, Guo Y, Feng B, Li H, Lu Y, Fang X, ... ... Durbin R, et al. The diploid genome sequence of an Asian individual. Nature. 456: 60-5. PMID 18987735 DOI: 10.1038/Nature07484 |
0.505 |
|
| 2008 |
Bentley DR, Balasubramanian S, Swerdlow HP, Smith GP, Milton J, Brown CG, Hall KP, Evers DJ, Barnes CL, Bignell HR, Boutell JM, Bryant J, Carter RJ, Keira Cheetham R, Cox AJ, ... ... Durbin R, et al. Accurate whole human genome sequencing using reversible terminator chemistry. Nature. 456: 53-9. PMID 18987734 DOI: 10.1038/Nature07517 |
0.491 |
|
| 2008 |
Li H, Ruan J, Durbin R. Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Research. 18: 1851-8. PMID 18714091 DOI: 10.1101/Gr.078212.108 |
0.411 |
|
| 2008 |
Down TA, Rakyan VK, Turner DJ, Flicek P, Li H, Kulesha E, Gräf S, Johnson N, Herrero J, Tomazou EM, Thorne NP, Bäckdahl L, Herberth M, Howe KL, Jackson DK, ... ... Durbin R, et al. A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis. Nature Biotechnology. 26: 779-85. PMID 18612301 DOI: 10.1038/Nbt1414 |
0.555 |
|
| 2008 |
Campbell PJ, Stephens PJ, Pleasance ED, O'Meara S, Li H, Santarius T, Stebbings LA, Leroy C, Edkins S, Hardy C, Teague JW, Menzies A, Goodhead I, Turner DJ, Clee CM, ... ... Durbin R, et al. Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing. Nature Genetics. 40: 722-9. PMID 18438408 DOI: 10.1038/Ng.128 |
0.467 |
|
| 2008 |
Poser I, Sarov M, Hutchins JR, Hériché JK, Toyoda Y, Pozniakovsky A, Weigl D, Nitzsche A, Hegemann B, Bird AW, Pelletier L, Kittler R, Hua S, Naumann R, Augsburg M, ... ... Durbin R, et al. BAC TransgeneOmics: a high-throughput method for exploration of protein function in mammals. Nature Methods. 5: 409-15. PMID 18391959 DOI: 10.1038/Nmeth.1199 |
0.371 |
|
| 2008 |
Ruan J, Li H, Chen Z, Coghlan A, Coin LJ, Guo Y, Hériché JK, Hu Y, Kristiansen K, Li R, Liu T, Moses A, Qin J, Vang S, Vilella AJ, ... ... Durbin R, et al. TreeFam: 2008 Update. Nucleic Acids Research. 36: D735-40. PMID 18056084 DOI: 10.1093/Nar/Gkm1005 |
0.391 |
|
| 2008 |
Flicek P, Aken BL, Beal K, Ballester B, Caccamo M, Chen Y, Clarke L, Coates G, Cunningham F, Cutts T, Down T, Dyer SC, Eyre T, Fitzgerald S, Fernandez-Banet J, ... ... Durbin R, et al. Ensembl 2008. Nucleic Acids Research. 36: D707-14. PMID 18000006 DOI: 10.1093/nar/gkm988 |
0.591 |
|
| 2008 |
Rogers A, Antoshechkin I, Bieri T, Blasiar D, Bastiani C, Canaran P, Chan J, Chen WJ, Davis P, Fernandes J, Fiedler TJ, Han M, Harris TW, Kishore R, Lee R, ... ... Durbin R, et al. WormBase 2007. Nucleic Acids Research. 36: D612-7. PMID 17991679 DOI: 10.1093/nar/gkm975 |
0.311 |
|
| 2007 |
Jiménez JL, Hegemann B, Hutchins JR, Peters JM, Durbin R. A systematic comparative and structural analysis of protein phosphorylation sites based on the mtcPTM database. Genome Biology. 8: R90. PMID 17521420 DOI: 10.1186/Gb-2007-8-5-R90 |
0.354 |
|
| 2007 |
Coghlan A, Durbin R. Genomix: a method for combining gene-finders' predictions, which uses evolutionary conservation of sequence and intron-exon structure. Bioinformatics (Oxford, England). 23: 1468-75. PMID 17483502 DOI: 10.1093/Bioinformatics/Btm133 |
0.38 |
|
| 2007 |
Hubbard TJ, Aken BL, Beal K, Ballester B, Caccamo M, Chen Y, Clarke L, Coates G, Cunningham F, Cutts T, Down T, Dyer SC, Fitzgerald S, Fernandez-Banet J, Graf S, ... ... Durbin R, et al. Ensembl 2007. Nucleic Acids Research. 35: D610-7. PMID 17148474 DOI: 10.1093/nar/gkl996 |
0.613 |
|
| 2007 |
Bieri T, Blasiar D, Ozersky P, Antoshechkin I, Bastiani C, Canaran P, Chan J, Chen N, Chen WJ, Davis P, Fiedler TJ, Girard L, Han M, Harris TW, Kishore R, ... ... Durbin R, et al. WormBase: new content and better access. Nucleic Acids Research. 35: D506-10. PMID 17099234 DOI: 10.1093/Nar/Gkl818 |
0.411 |
|
| 2007 |
Coin L, Durbin R. Improved techniques for the identification of pseudogenes. Bioinformatics (Oxford, England). i94-100. PMID 15262786 DOI: 10.1093/bioinformatics/bth942 |
0.366 |
|
| 2006 |
Minichiello MJ, Durbin R. Mapping trait loci by use of inferred ancestral recombination graphs. American Journal of Human Genetics. 79: 910-22. PMID 17033967 DOI: 10.1086/508901 |
0.327 |
|
| 2006 |
Jiménez JL, Durbin R. [X]uniqMAP: unique gene sequence regions in the human and mouse genomes. Bmc Genomics. 7: 249. PMID 17026744 DOI: 10.1186/1471-2164-7-249 |
0.433 |
|
| 2006 |
Carter D, Durbin R. Vertebrate gene finding from multiple-species alignments using a two-level strategy. Genome Biology. 7: S6.1-12. PMID 16925840 DOI: 10.1186/Gb-2006-7-S1-S6 |
0.342 |
|
| 2006 |
Hajarnavis A, Durbin R. A conserved sequence motif in 3' untranslated regions of ribosomal protein mRNAs in nematodes. Rna. 12: 1786-1789. PMID 16917125 DOI: 10.1261/Rna.51306 |
0.326 |
|
| 2006 |
Gregory SG, Barlow KF, McLay KE, Kaul R, Swarbreck D, Dunham A, Scott CE, Howe KL, Woodfine K, Spencer CC, Jones MC, Gillson C, Searle S, Zhou Y, Kokocinski F, ... ... Durbin R, et al. The DNA sequence and biological annotation of human chromosome 1. Nature. 441: 315-21. PMID 16710414 DOI: 10.1038/Nature04727 |
0.449 |
|
| 2006 |
Li H, Coghlan A, Ruan J, Coin LJ, Hériché JK, Osmotherly L, Li R, Liu T, Zhang Z, Bolund L, Wong GK, Zheng W, Dehal P, Wang J, Durbin R. TreeFam: a curated database of phylogenetic trees of animal gene families. Nucleic Acids Research. 34: D572-80. PMID 16381935 DOI: 10.1093/Nar/Gkj118 |
0.425 |
|
| 2006 |
Birney E, Andrews D, Caccamo M, Chen Y, Clarke L, Coates G, Cox T, Cunningham F, Curwen V, Cutts T, Down T, Durbin R, Fernandez-Suarez XM, Flicek P, Gräf S, et al. Ensembl 2006. Nucleic Acids Research. 34: D556-61. PMID 16381931 DOI: 10.1093/nar/gkj133 |
0.604 |
|
| 2006 |
Schwarz EM, Antoshechkin I, Bastiani C, Bieri T, Blasiar D, Canaran P, Chan J, Chen N, Chen WJ, Davis P, Fiedler TJ, Girard L, Harris TW, Kenny EE, Kishore R, ... ... Durbin R, et al. WormBase: better software, richer content. Nucleic Acids Research. 34: D475-8. PMID 16381915 DOI: 10.1093/Nar/Gkj061 |
0.481 |
|
| 2006 |
Finn RD, Mistry J, Schuster-Böckler B, Griffiths-Jones S, Hollich V, Lassmann T, Moxon S, Marshall M, Khanna A, Durbin R, Eddy SR, Sonnhammer EL, Bateman A. Pfam: clans, web tools and services. Nucleic Acids Research. 34: D247-51. PMID 16381856 DOI: 10.1093/Nar/Gkj149 |
0.567 |
|
| 2005 |
Eilbeck K, Lewis SE, Mungall CJ, Yandell M, Stein L, Durbin R, Ashburner M. The Sequence Ontology: a tool for the unification of genome annotations. Genome Biology. 6: R44. PMID 15892872 DOI: 10.1186/Gb-2005-6-5-R44 |
0.466 |
|
| 2005 |
Ross MT, Grafham DV, Coffey AJ, Scherer S, McLay K, Muzny D, Platzer M, Howell GR, Burrows C, Bird CP, Frankish A, Lovell FL, Howe KL, Ashurst JL, Fulton RS, ... ... Durbin R, et al. The DNA sequence of the human X chromosome. Nature. 434: 325-37. PMID 15772651 DOI: 10.1038/Nature03440 |
0.315 |
|
| 2005 |
Hubbard T, Andrews D, Caccamo M, Cameron G, Chen Y, Clamp M, Clarke L, Coates G, Cox T, Cunningham F, Curwen V, Cutts T, Down T, Durbin R, Fernandez-Suarez XM, et al. Ensembl 2005. Nucleic Acids Research. 33: D447-53. PMID 15608235 DOI: 10.1093/nar/gki138 |
0.604 |
|
| 2005 |
Chen N, Harris TW, Antoshechkin I, Bastiani C, Bieri T, Blasiar D, Bradnam K, Canaran P, Chan J, Chen CK, Chen WJ, Cunningham F, Davis P, Kenny E, Kishore R, ... ... Durbin R, et al. WormBase: a comprehensive data resource for Caenorhabditis biology and genomics. Nucleic Acids Research. 33: D383-9. PMID 15608221 DOI: 10.1093/Nar/Gki066 |
0.427 |
|
| 2005 |
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bradley P, Bork P, Bucher P, Cerutti L, Copley R, Courcelle E, Das U, Durbin R, Fleischmann W, et al. InterPro, progress and status in 2005. Nucleic Acids Research. 33: D201-5. PMID 15608177 DOI: 10.1093/Nar/Gki106 |
0.365 |
|
| 2004 |
Hajarnavis A, Korf IF, Durbin R. A probabilistic model of 3' end formation in Caenorhabditis elegans Nucleic Acids Research. 32: 3392-3399. PMID 15247332 DOI: 10.1093/Nar/Gkh656 |
0.413 |
|
| 2004 |
Humphray SJ, Oliver K, Hunt AR, Plumb RW, Loveland JE, Howe KL, Andrews TD, Searle S, Hunt SE, Scott CE, Jones MC, Ainscough R, Almeida JP, Ambrose KD, Ashwell RI, ... ... Durbin R, et al. DNA sequence and analysis of human chromosome 9. Nature. 429: 369-74. PMID 15164053 DOI: 10.1038/Nature02465 |
0.417 |
|
| 2004 |
Birney E, Clamp M, Durbin R. GeneWise and Genomewise Genome Research. 14: 988-995. PMID 15123596 DOI: 10.1101/Gr.1865504 |
0.524 |
|
| 2004 |
Birney E, Andrews TD, Bevan P, Caccamo M, Chen Y, Clarke L, Coates G, Cuff J, Curwen V, Cutts T, Down T, Eyras E, Fernandez-Suarez XM, Gane P, Gibbins B, ... ... Durbin R, et al. An overview of Ensembl. Genome Research. 14: 925-8. PMID 15078858 DOI: 10.1101/Gr.1860604 |
0.649 |
|
| 2004 |
Gibbs RA, Weinstock GM, Metzker ML, Muzny DM, Sodergren EJ, Scherer S, Scott G, Steffen D, Worley KC, Burch PE, Okwuonu G, Hines S, Lewis L, DeRamo C, Delgado O, ... ... Durbin R, et al. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature. 428: 493-521. PMID 15057822 DOI: 10.1038/Nature02426 |
0.654 |
|
| 2004 |
Meyer IM, Durbin R. Gene structure conservation aids similarity based gene prediction Nucleic Acids Research. 32: 776-783. PMID 14764925 DOI: 10.1093/Nar/Gkh211 |
0.43 |
|
| 2004 |
Birney E, Andrews D, Bevan P, Caccamo M, Cameron G, Chen Y, Clarke L, Coates G, Cox T, Cuff J, Curwen V, Cutts T, Down T, Durbin R, Eyras E, et al. Ensembl 2004. Nucleic Acids Research. 32: D468-70. PMID 14681459 DOI: 10.1093/nar/gkh038 |
0.612 |
|
| 2004 |
Harris TW, Chen N, Cunningham F, Tello-Ruiz M, Antoshechkin I, Bastiani C, Bieri T, Blasiar D, Bradnam K, Chan J, Chen CK, Chen WJ, Davis P, Kenny E, Kishore R, ... ... Durbin R, et al. WormBase: a multi-species resource for nematode biology and genomics. Nucleic Acids Research. 32: D411-7. PMID 14681445 DOI: 10.1093/Nar/Gkh066 |
0.489 |
|
| 2004 |
Bateman A, Coin L, Durbin R, Finn RD, Hollich V, Griffiths-Jones S, Khanna A, Marshall M, Moxon S, Sonnhammer EL, Studholme DJ, Yeats C, Eddy SR. The Pfam protein families database. Nucleic Acids Research. 32: D138-41. PMID 14681378 DOI: 10.1093/nar/gkh121 |
0.536 |
|
| 2003 |
Stein LD, Bao Z, Blasiar D, Blumenthal T, Brent MR, Chen N, Chinwalla A, Clarke L, Clee C, Coghlan A, Coulson A, D'Eustachio P, Fitch DH, Fulton LA, Fulton RE, ... ... Durbin R, et al. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Plos Biology. 1: E45. PMID 14624247 DOI: 10.1371/Journal.Pbio.0000045 |
0.424 |
|
| 2003 |
Mungall AJ, Palmer SA, Sims SK, Edwards CA, Ashurst JL, Wilming L, Jones MC, Horton R, Hunt SE, Scott CE, Gilbert JG, Clamp ME, Bethel G, Milne S, Ainscough R, ... ... Durbin R, et al. The DNA sequence and analysis of human chromosome 6. Nature. 425: 805-11. PMID 14574404 DOI: 10.1038/nature02055 |
0.33 |
|
| 2003 |
Coin L, Bateman A, Durbin R. Enhanced protein domain discovery by using language modeling techniques from speech recognition. Proceedings of the National Academy of Sciences of the United States of America. 100: 4516-20. PMID 12668763 DOI: 10.1073/Pnas.0737502100 |
0.305 |
|
| 2003 |
Kamath RS, Fraser AG, Dong Y, Poulin G, Durbin R, Gotta M, Kanapin A, Le Bot N, Moreno S, Sohrmann M, Welchman DP, Zipperlen P, Ahringer J. Systematic functional analysis of the Caenorhabditis elegans genome using RNAi. Nature. 421: 231-7. PMID 12529635 DOI: 10.1038/Nature01278 |
0.393 |
|
| 2003 |
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Barrell D, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley RR, Courcelle E, Das U, Durbin R, et al. The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Research. 31: 315-8. PMID 12520011 DOI: 10.1093/Nar/Gkg046 |
0.379 |
|
| 2003 |
Harris TW, Lee R, Schwarz E, Bradnam K, Lawson D, Chen W, Blasier D, Kenny E, Cunningham F, Kishore R, Chan J, Muller HM, Petcherski A, Thorisson G, Day A, ... ... Durbin R, et al. WormBase: a cross-species database for comparative genomics. Nucleic Acids Research. 31: 133-7. PMID 12519966 DOI: 10.1093/nar/gkg053 |
0.372 |
|
| 2003 |
Clamp M, Andrews D, Barker D, Bevan P, Cameron G, Chen Y, Clark L, Cox T, Cuff J, Curwen V, Down T, Durbin R, Eyras E, Gilbert J, Hammond M, et al. Ensembl 2002: accommodating comparative genomics. Nucleic Acids Research. 31: 38-42. PMID 12519943 DOI: 10.1093/Nar/Gkg083 |
0.665 |
|
| 2002 |
Howe K, Bateman A, Durbin R. QuickTree: building huge Neighbour-Joining trees of protein sequences. Bioinformatics (Oxford, England). 18: 1546-7. PMID 12424131 DOI: 10.1093/Bioinformatics/18.11.1546 |
0.379 |
|
| 2002 |
Meyer IM, Durbin R. Comparative ab initio prediction of gene structures using pair HMMs. Bioinformatics. 18: 1309-1318. PMID 12376375 DOI: 10.1093/Bioinformatics/18.10.1309 |
0.406 |
|
| 2002 |
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley R, Courcelle E, Durbin R, Falquet L, Fleischmann W, et al. InterPro: an integrated documentation resource for protein families, domains and functional sites. Briefings in Bioinformatics. 3: 225-35. PMID 12230031 DOI: 10.1093/Bib/3.3.225 |
0.463 |
|
| 2002 |
Howe KL, Chothia T, Durbin R. GAZE: a generic framework for the integration of gene-prediction data by dynamic programming. Genome Research. 12: 1418-27. PMID 12213779 DOI: 10.1101/Gr.149502 |
0.348 |
|
| 2002 |
Bateman A, Birney E, Cerruti L, Durbin R, Etwiller L, Eddy SR, Griffiths-Jones S, Howe KL, Marshall M, Sonnhammer EL. The Pfam protein families database. Nucleic Acids Research. 30: 276-80. PMID 11752314 |
0.675 |
|
| 2002 |
Hubbard T, Barker D, Birney E, Cameron G, Chen Y, Clark L, Cox T, Cuff J, Curwen V, Down T, Durbin R, Eyras E, Gilbert J, Hammond M, Huminiecki L, et al. The Ensembl genome database project. Nucleic Acids Research. 30: 38-41. PMID 11752248 DOI: 10.1093/Nar/30.1.38 |
0.653 |
|
| 2001 |
Deloukas P, Matthews LH, Ashurst J, Burton J, Gilbert JG, Jones M, Stavrides G, Almeida JP, Babbage AK, Bagguley CL, Bailey J, Barlow KF, Bates KN, Beard LM, Beare DM, ... ... Durbin RM, et al. The DNA sequence and comparative analysis of human chromosome 20. Nature. 414: 865-71. PMID 11780052 DOI: 10.1038/414865A |
0.446 |
|
| 2001 |
Levine A, Durbin R. A computational scan for U12-dependent introns in the human genome sequence Nucleic Acids Research. 29: 4006-4013. PMID 11574683 DOI: 10.1093/Nar/29.19.4006 |
0.447 |
|
| 2001 |
Bentley DR, Deloukas P, Dunham A, French L, Gregory SG, Humphray SJ, Mungall AJ, Ross MT, Carter NP, Dunham I, Scott CE, Ashcroft KJ, Atkinson AL, Aubin K, Beare DM, ... ... Durbin RM, et al. The physical maps for sequencing human chromosomes 1, 6, 9, 10, 13, 20 and X. Nature. 409: 942-3. PMID 11237015 DOI: 10.1038/35057165 |
0.346 |
|
| 2001 |
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W, Funke R, Gage D, Harris K, Heaford A, Howland J, ... ... Durbin R, et al. Initial sequencing and analysis of the human genome. Nature. 409: 860-921. PMID 11237011 DOI: 10.1038/35057062 |
0.645 |
|
| 2001 |
Stein L, Sternberg P, Durbin R, Thierry-Mieg J, Spieth J. WormBase: network access to the genome and biology of Caenorhabditis elegans. Nucleic Acids Research. 29: 82-6. PMID 11125056 DOI: 10.1093/Nar/29.1.82 |
0.426 |
|
| 2001 |
Apweiler R, Attwood TK, Bairoch A, Bateman A, Birney E, Biswas M, Bucher P, Cerutti L, Corpet F, Croning MD, Durbin R, Falquet L, Fleischmann W, Gouzy J, Hermjakob H, et al. The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Research. 29: 37-40. PMID 11125043 DOI: 10.1093/Nar/29.1.37 |
0.583 |
|
| 2001 |
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, Fitzhugh W, Funke R, Gage D, Harris K, Heaford A, Howland J, ... ... Durbin R, et al. Erratum: Initial sequencing and analysis of the human genome: International Human Genome Sequencing Consortium (Nature (2001) 409 (860-921)) Nature. 412: 565-566. DOI: 10.1038/35087627 |
0.643 |
|
| 2000 |
Apweiler R, Attwood TK, Bairoch A, Bateman A, Birney E, Biswas M, Bucher P, Cerutti L, Corpet F, Croning MD, Durbin R, Falquet L, Fleischmann W, Gouzy J, Hermjakob H, et al. InterPro--an integrated documentation resource for protein families, domains and functional sites. Bioinformatics (Oxford, England). 16: 1145-50. PMID 11159333 DOI: 10.1093/Bioinformatics/16.12.1145 |
0.543 |
|
| 2000 |
Jareborg N, Durbin R. Alfresco—A Workbench for Comparative Genomic Sequence Analysis Genome Research. 10: 1148-1157. PMID 10958633 DOI: 10.1101/Gr.10.8.1148 |
0.491 |
|
| 2000 |
Birney E, Durbin R. Using GeneWise in the Drosophila Annotation Experiment Genome Research. 10: 547-548. PMID 10779496 DOI: 10.1101/Gr.10.4.547 |
0.567 |
|
| 2000 |
Bateman A, Birney E, Durbin R, Eddy SR, Howe KL, Sonnhammer EL. The Pfam protein families database. Nucleic Acids Research. 28: 263-6. PMID 10592242 DOI: 10.1093/nar/28.1.263 |
0.33 |
|
| 1999 |
Jareborg N, Birney E, Durbin R. Comparative Analysis of Noncoding Regions of 77 Orthologous Mouse and Human Gene Pairs Genome Research. 9: 815-824. PMID 10508839 DOI: 10.1101/Gr.9.9.815 |
0.63 |
|
| 1999 |
Bateman A, Birney E, Durbin R, Eddy SR, Finn RD, Sonnhammer ELL. Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins Nucleic Acids Research. 27: 260-262. PMID 9847196 DOI: 10.1093/Nar/27.1.260 |
0.667 |
|
| 1998 |
Holmes I, Durbin R. Dynamic programming alignment accuracy. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 5: 493-504. PMID 9773345 DOI: 10.1089/Cmb.1998.5.493 |
0.552 |
|
| 1998 |
Dear S, Durbin R, Hillier L, Marth G, Thierry-Mieg J, Mott R. Sequence Assembly with CAFTOOLS Genome Research. 8: 260-267. PMID 9521929 DOI: 10.1101/Gr.8.3.260 |
0.434 |
|
| 1998 |
Durbin R, Dear S. Base Qualities Help Sequencing Software Genome Research. 8: 161-162. PMID 9521917 DOI: 10.1101/Gr.8.3.161 |
0.34 |
|
| 1998 |
Sonnhammer ELL, Eddy SR, Birney E, Bateman A, Durbin R. Pfam: Multiple sequence alignments and HMM-profiles of protein domains Nucleic Acids Research. 26: 320-322. PMID 9399864 DOI: 10.1093/Nar/26.1.320 |
0.719 |
|
| 1997 |
Martinelli SD, Brown CG, Durbin R. Gene expression and development databases for C. elegans Seminars in Cell & Developmental Biology. 8: 459-67. PMID 9441951 DOI: 10.1006/Scdb.1997.0171 |
0.367 |
|
| 1997 |
Sonnhammer ELL, Durbin R. Analysis of protein domain families in Caenorhabditis elegans Genomics. 46: 200-216. PMID 9417907 DOI: 10.1006/Geno.1997.4989 |
0.628 |
|
| 1997 |
Rezsohazy R, Van Luenen HGAM, Durbin RM, Plasterk RHA. Tc7, a Tc1-hitch hiking transposon in Caenorhabditis elegans Nucleic Acids Research. 25: 4048-4054. PMID 9321656 DOI: 10.1093/Nar/25.20.4048 |
0.373 |
|
| 1997 |
Sonnhammer ELL, Eddy SR, Durbin R. Pfam: A comprehensive database of protein domain families based on seed alignments Proteins: Structure, Function and Genetics. 28: 405-420. PMID 9223186 DOI: 10.1002/(Sici)1097-0134(199707)28:3<405::Aid-Prot10>3.0.Co;2-L |
0.638 |
|
| 1996 |
Korswagen HC, Durbin RM, Smits MT, Plasterk RHA. Transposon Te1-derived, sequence-tagged sites in Caenorhabditis elegans as markers for gene mapping Proceedings of the National Academy of Sciences of the United States of America. 93: 14680-14685. PMID 8962114 DOI: 10.1073/Pnas.93.25.14680 |
0.433 |
|
| 1996 |
Hope IA, Albertson DG, Martinelli SD, Lynch AS, Sonnhammer E, Durbin R. The C. elegans expression pattern database: a beginning Trends in Genetics. 12: 370-371. DOI: 10.1016/S0168-9525(96)80021-7 |
0.522 |
|
| 1995 |
Sonnhammer ELL, Durbin R. A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis Gene. 167. PMID 8566757 DOI: 10.1016/0378-1119(95)00714-8 |
0.615 |
|
| 1995 |
Baxendale S, Abdulla S, Elgar G, Buck D, Berks M, Micklem G, Durbin R, Bates G, Brenner S, Beck S. Comparative sequence analysis of the human and pufferfish Huntington's disease genes. Nature Genetics. 10: 67-76. PMID 7647794 DOI: 10.1038/Ng0595-67 |
0.606 |
|
| 1995 |
Eddy SR, Mitchison G, Durbin R. Maximum discrimination hidden Markov models of sequence consensus Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 2: 9-23. PMID 7497123 DOI: 10.1089/Cmb.1995.2.9 |
0.398 |
|
| 1995 |
Eeckman FH, Durbin R. ACeDB and macace. Methods in Cell Biology. 48: 583-605. DOI: 10.1016/S0091-679X(08)61405-3 |
0.324 |
|
| 1995 |
Mitchison G, Durbin R. Tree-based maximal likelihood substitution matrices and hidden Markov models Journal of Molecular Evolution. 41: 1139-1151. DOI: 10.1007/Bf00173195 |
0.354 |
|
| 1994 |
Eddy SR, Durbin R. RNA sequence analysis using covariance models Nucleic Acids Research. 22: 2079-2088. PMID 8029015 DOI: 10.1093/Nar/22.11.2079 |
0.383 |
|
| 1994 |
Sonnhammer ELL, Durbin R. A workbench for large-scale sequence homology analysis Bioinformatics. 10: 301-307. PMID 7922687 DOI: 10.1093/Bioinformatics/10.3.301 |
0.642 |
|
| 1994 |
Durbin R, Thierry-Mieg J. The ACEDB genome database Genome Informatics. 4: 45-55. DOI: 10.1007/978-1-4615-2451-9_4 |
0.47 |
|
| 1992 |
Waterston R, Martin C, Craxton M, Huynh C, Coulson A, Hillier L, Durbin R, Green P, Shownkeen R, Halloran N, Metzstein M, Hawkins T, Wilson R, Berks M, Du Z, et al. A survey of expressed genes in Caenorhabditis elegans Nature Genetics. 1: 114-123. PMID 1302004 DOI: 10.1038/Ng0592-114 |
0.469 |
|
| 1988 |
Sulston J, Mallett F, Staden R, Durbin R, Horsnell T, Coulson A. Software for genome mapping by fingerprinting techniques. Computer Applications in the Biosciences : Cabios. 4: 125-32. PMID 2838135 DOI: 10.1093/Bioinformatics/4.1.125 |
0.395 |
|
| 1985 |
Harrison SC, Durbin R. Is There a Single Pathway for the Folding of a Polypeptide Chain Proceedings of the National Academy of Sciences of the United States of America. 82: 4028-4030. PMID 3858860 DOI: 10.1073/Pnas.82.12.4028 |
0.3 |
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