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Zhifeng Jing - Publications

Affiliations: 
2012-2015 Shanghai Jiao Tong Universy 
Area:
Computational Chemistry
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26 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Lee J, Guo HF, Wang S, Maghsoud Y, Vázquez-Montelongo EA, Jing Z, Sammons RM, Cho EJ, Ren P, Cisneros GA, Kurie JM, Dalby KN. Unleashing the Potential of 1,3-Diketone Analogues as Selective LH2 Inhibitors. Acs Medicinal Chemistry Letters. 14: 1396-1403. PMID 37849534 DOI: 10.1021/acsmedchemlett.3c00305  0.407
2023 Maghsoud Y, Vázquez-Montelongo EA, Yang X, Liu C, Jing Z, Lee J, Harger M, Smith AK, Espinoza M, Guo HF, Kurie JM, Dalby KN, Ren P, Cisneros GA. Computational Investigation of a Series of Small Molecules as Potential Compounds for Lysyl Hydroxylase-2 (LH2) Inhibition. Journal of Chemical Information and Modeling. 63: 986-1001. PMID 36779232 DOI: 10.1021/acs.jcim.2c01448  0.549
2022 Jing Z, Ren P. Molecular Dynamics Simulations of Protein RNA Complexes by Using an Advanced Electrostatic Model. The Journal of Physical Chemistry. B. 126: 7343-7353. PMID 36107618 DOI: 10.1021/acs.jpcb.2c05278  0.526
2022 El Khoury L, Jing Z, Cuzzolin A, Deplano A, Loco D, Sattarov B, Hédin F, Wendeborn S, Ho C, El Ahdab D, Jaffrelot Inizan T, Sturlese M, Sosic A, Volpiana M, Lugato A, et al. Computationally driven discovery of SARS-CoV-2 M inhibitors: from design to experimental validation. Chemical Science. 13: 3674-3687. PMID 35432906 DOI: 10.1039/d1sc05892d  0.688
2021 Walker B, Jing Z, Ren P. Molecular dynamics free energy simulations of ATP:Mg and ADP:Mg using the polarizable force field AMOEBA. Molecular Simulation. 47: 439-448. PMID 34421214 DOI: 10.1080/08927022.2020.1725003  0.692
2021 Jing Z, Rackers JA, Pratt LR, Liu C, Rempe SB, Ren P. Thermodynamics of ion binding and occupancy in potassium channels. Chemical Science. 12: 8920-8930. PMID 34257893 DOI: 10.1039/d1sc01887f  0.577
2021 Jing Z, Liu C, Ren P. Advanced Electrostatic Model for Monovalent Ions Based on Ab Initio Energy Decomposition. Journal of Chemical Information and Modeling. PMID 34096706 DOI: 10.1021/acs.jcim.1c00426  0.589
2020 Walker B, Jing Z, Ren P. Molecular dynamics free energy simulations of ATP:Mg2+ and ADP:Mg2+ using the polarisable force field AMOEBA Molecular Simulation. 1-10. DOI: 10.1080/08927022.2020.1725003  0.682
2019 Jing Z, Qi R, Thibonnier M, Ren P. Molecular Dynamics Study of the Hybridization between RNA and Modified Oligonucleotides. Journal of Chemical Theory and Computation. PMID 31553600 DOI: 10.1021/Acs.Jctc.9B00519  0.548
2019 Qi R, Walker B, Jing Z, Yu M, Stancu G, Edupuganti R, Dalby KN, Ren P. Computational and Experimental Studies of Inhibitor Design for Aldolase A. The Journal of Physical Chemistry. B. PMID 31268712 DOI: 10.1021/Acs.Jpcb.9B04551  0.699
2019 Jing Z, Liu C, Cheng SY, Qi R, Walker BD, Piquemal JP, Ren P. Polarizable Force Fields for Biomolecular Simulations: Recent Advances and Applications. Annual Review of Biophysics. PMID 30916997 DOI: 10.1146/Annurev-Biophys-070317-033349  0.715
2018 Meng F, Jing Z, Ferreira R, Ren P, Zhang F. Investigating the Association Mechanism between Rafoxanide and Povidone. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 30360618 DOI: 10.1021/Acs.Langmuir.8B03174  0.466
2018 Jing Z, Liu C, Qi R, Ren P. Many-body effect determines the selectivity for Ca and Mg in proteins. Proceedings of the National Academy of Sciences of the United States of America. PMID 30038003 DOI: 10.1073/Pnas.1805049115  0.614
2018 Qi R, Jing Z, Liu C, Piquemal JP, Dalby KN, Ren P. Elucidating the Phosphate Binding Mode of PBP: The Critical Effect of Buffer Solution. The Journal of Physical Chemistry. B. PMID 29807433 DOI: 10.1021/Acs.Jpcb.8B03194  0.628
2018 Lagardère L, Jolly LH, Lipparini F, Aviat F, Stamm B, Jing ZF, Harger M, Torabifard H, Cisneros GA, Schnieders MJ, Gresh N, Maday Y, Ren PY, Ponder JW, Piquemal JP. Tinker-HP: a massively parallel molecular dynamics package for multiscale simulations of large complex systems with advanced point dipole polarizable force fields. Chemical Science. 9: 956-972. PMID 29732110 DOI: 10.1039/C7Sc04531J  0.691
2018 Zhang C, Lu C, Jing Z, Wu C, Piquemal JP, Ponder JW, Ren P. AMOEBA Polarizable Atomic Multipole Force Field for Nucleic Acids. Journal of Chemical Theory and Computation. PMID 29438622 DOI: 10.1021/Acs.Jctc.7B01169  0.693
2017 Jing Z, Qi R, Liu C, Ren P. Study of interactions between metal ions and protein model compounds by energy decomposition analyses and the AMOEBA force field. The Journal of Chemical Physics. 147: 161733. PMID 29096462 DOI: 10.1063/1.4985921  0.627
2017 Han X, Jing Z, Wu W, Zou B, Peng Z, Ren P, Wikramanayake A, Lu Z, Leblanc RM. Biocompatible and blood-brain barrier permeable carbon dots for inhibition of Aβ fibrillation and toxicity, and BACE1 activity. Nanoscale. PMID 28850143 DOI: 10.1039/C7Nr04352J  0.438
2016 Bell DR, Qi R, Jing Z, Xiang JY, Mejias C, Schnieders MJ, Ponder JW, Ren P. Calculating binding free energies of host-guest systems using the AMOEBA polarizable force field. Physical Chemistry Chemical Physics : Pccp. PMID 27254477 DOI: 10.1039/C6Cp02509A  0.706
2016 Cao F, Jing Z, Sun H. Predicting the adsorption of n-perfluorohexane (n-C6F14) on BAM-P109 activated carbon using an ab initio force field Adsorption Science & Technology. 34: 110-122. DOI: 10.1177/0263617415619532  0.594
2015 Jing Z, Sun H. A Comment on the Reweighting Method for Accelerated Molecular Dynamics Simulations. Journal of Chemical Theory and Computation. 11: 2395-2397. PMID 26575539 DOI: 10.1021/acs.jctc.5b00236  0.587
2015 Jin Z, Yang C, Cao F, Li F, Jing Z, Chen L, Shen Z, Xin L, Tong S, Sun H. Hierarchical atom type definitions and extensible all-atom force fields. Journal of Computational Chemistry. PMID 26537332 DOI: 10.1002/Jcc.24244  0.631
2015 Jing Z, Xin L, Sun H. Replica exchange reactive molecular dynamics simulations of initial reactions in zeolite synthesis. Physical Chemistry Chemical Physics : Pccp. 17: 25421-8. PMID 26365615 DOI: 10.1039/C5Cp03063C  0.641
2015 Jing Z, Sun H. A Comment on the Reweighting Method for Accelerated Molecular Dynamics Simulations Journal of Chemical Theory and Computation. 11: 2395-2397. DOI: 10.1021/acs.jctc.5b00236  0.579
2014 Xu D, Ma Y, Jing Z, Han L, Singh B, Feng J, Shen X, Cao F, Oleynikov P, Sun H, Terasaki O, Che S. π-π interaction of aromatic groups in amphiphilic molecules directing for single-crystalline mesostructured zeolite nanosheets. Nature Communications. 5: 4262. PMID 24957696 DOI: 10.1038/Ncomms5262  0.591
2014 Xu D, Jing Z, Cao F, Sun H, Che S. Surfactants with aromatic-group tail and single quaternary ammonium head for directing single-crystalline mesostructured zeolite nanosheets Chemistry of Materials. 26: 4612-4619. DOI: 10.1021/Cm502027J  0.561
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