Brent S. Pedersen, Ph.D.

2005 University of California, Berkeley, Berkeley, CA 
Ecology Biology
"Brent Pedersen"


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Nicholas J. Mills grad student 2005 UC Berkeley
 (Spatial considerations in host -parasitoid interactions and effects on biological control.)
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Alper S, Warg LA, De Arras L, et al. (2016) Novel Innate Immune Genes Regulating the Macrophage Response to Gram Positive Bacteria. Genetics
Pedersen BS, Layer RM, Quinlan AR. (2016) Vcfanno: fast, flexible annotation of genetic variants. Genome Biology. 17: 118
Eyring KR, Pedersen BS, Yang IV, et al. (2015) In Utero Cigarette Smoke Affects Allergic Airway Disease But Does Not Alter the Lung Methylome. Plos One. 10: e0144087
Julian CG, Pedersen BS, Salmon CS, et al. (2015) Unique DNA Methylation Patterns in Offspring of Hypertensive Pregnancy. Clinical and Translational Science
Smith KS, Yadav VK, Pedersen BS, et al. (2015) Signatures of accelerated somatic evolution in gene promoters in multiple cancer types. Nucleic Acids Research. 43: 5307-17
Yang IV, Pedersen BS, Liu A, et al. (2015) DNA methylation and childhood asthma in the inner city. The Journal of Allergy and Clinical Immunology. 136: 69-80
Yang IV, Pedersen BS, Rabinovich E, et al. (2014) Relationship of DNA methylation and gene expression in idiopathic pulmonary fibrosis. American Journal of Respiratory and Critical Care Medicine. 190: 1263-72
Julian CG, Yang IV, Browne VA, et al. (2014) Inhibition of peroxisome proliferator-activated receptor γ: a potential link between chronic maternal hypoxia and impaired fetal growth. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 28: 1268-79
De S, Pedersen BS, Kechris K. (2014) The dilemma of choosing the ideal permutation strategy while estimating statistical significance of genome-wide enrichment. Briefings in Bioinformatics. 15: 919-28
Pedersen BS, Yang IV, De S. (2013) CruzDB: software for annotation of genomic intervals with UCSC genome-browser database. Bioinformatics (Oxford, England). 29: 3003-6
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