Dipak Barua, Ph.D.

Affiliations: 
2008 North Carolina State University, Raleigh, NC 
Area:
Chemical Engineering
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"Dipak Barua"

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Jason M. Haugh grad student 2008 NCSU
 (Rule-based computational modeling of modular signaling protein interactions.)
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Publications

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Khetan J, Barua D. (2019) Analysis of Fn14-NF-κB Signaling Response Dynamics Using a Mechanistic Model. Journal of Theoretical Biology
Erickson KE, Rukhlenko OS, Shahinuzzaman M, et al. (2019) Modeling cell line-specific recruitment of signaling proteins to the insulin-like growth factor 1 receptor. Plos Computational Biology. 15: e1006706
Shahinuzzaman M, Khetan J, Barua D. (2018) A spatio-temporal model reveals self-limiting FcRI cross-linking by multivalent antigens. Royal Society Open Science. 5: 180190
Khetan J, Shahinuzzaman M, Barua S, et al. (2018) Quantitative Analysis of the Correlation between Cell Size and Cellular Uptake of Particles. Biophysical Journal
Barua D. (2018) A model-based analysis of tissue targeting efficacy of nanoparticles. Journal of the Royal Society, Interface. 15
Shahinuzzaman MD, Barua D. (2017) A Multiscale Algorithm for Spatiotemporal Modeling of Multivalent Protein-Protein Interaction. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology
Harris LA, Hogg JS, Tapia JJ, et al. (2016) BioNetGen 2.2: Advances in Rule-Based Modeling. Bioinformatics (Oxford, England)
Mahajan A, Barua D, Cutler P, et al. (2014) Optimal aggregation of FcεRI with a structurally defined trivalent ligand overrides negative regulation driven by phosphatases. Acs Chemical Biology. 9: 1508-19
Kozer N, Barua D, Henderson C, et al. (2014) Recruitment of the adaptor protein Grb2 to EGFR tetramers. Biochemistry. 53: 2594-604
Barua D, Hlavacek WS. (2013) Modeling the effect of APC truncation on destruction complex function in colorectal cancer cells. Plos Computational Biology. 9: e1003217
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