Jason E. Shoemaker

Affiliations: 
chemical engineering University of California, Santa Barbara, Santa Barbara, CA, United States 
 chemical & petroleum engineering University of Pittsburgh, Pittsburgh, PA, United States 
Website:
http://www.shoemakerlab.pitt.edu/
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"Jason Shoemaker"

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Francis J. Doyle grad student 2009 UC Santa Barbara
 (Design principles in biological networks: Balancing efficacy with robustness)
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Publications

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Ostaszewski M, Niarakis A, Mazein A, et al. (2021) COVID-19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms. Molecular Systems Biology. 17: e10851
Ostaszewski M, Niarakis A, Mazein A, et al. (2021) COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms. Molecular Systems Biology. 17: e10387
Noh H, Hua Z, Chrysinas P, et al. (2021) DeltaNeTS+: elucidating the mechanism of drugs and diseases using gene expression and transcriptional regulatory networks. Bmc Bioinformatics. 22: 108
Wang M, Luciani LL, Noh H, et al. (2020) TREAP: A New Topological Approach to Drug Target Inference. Biophysical Journal
Wang Y, An G, Becker A, et al. (2020) Rapid community-driven development of a SARS-CoV-2 tissue simulator. Biorxiv : the Preprint Server For Biology
Fukuyama S, Iwatsuki-Horimoto K, Kiso M, et al. (2020) Pathogenesis of influenza A(H7N9) virus in aged non-human primates. The Journal of Infectious Diseases
Sato R, Makino-Okamura C, Lin Q, et al. (2020) Repurposing the Psoriasis Drug Oxarol to an ointment adjuvant for the influenza vaccine. International Immunology
Ackerman EE, Alcorn JF, Hase T, et al. (2019) A dual controllability analysis of influenza virus-host protein-protein interaction networks for antiviral drug target discovery. Bmc Bioinformatics. 20: 297
Ackerman EE, Kawakami E, Katoh M, et al. (2018) Network-Guided Discovery of Influenza Virus Replication Host Factors. Mbio. 9
Gregg RW, Sarkar SN, Shoemaker JE. (2018) Mathematical Modeling of the cGAS Pathway Reveals Robustness of DNA Sensing to TREX1 Feedback. Journal of Theoretical Biology
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