Year |
Citation |
Score |
2020 |
Roodgar M, Babveyh A, Nguyen LH, Zhou W, Sinha R, Lee H, Hanks JB, Avula M, Jiang L, Jian R, Lee H, Song G, Chaib H, Weissman IL, Batzoglou S, et al. Chromosome-level de novo assembly of the pig-tailed macaque genome using linked-read sequencing and HiC proximity scaffolding. Gigascience. 9. PMID 32649757 DOI: 10.1093/Gigascience/Giaa069 |
0.361 |
|
2020 |
Oh D, Strattan JS, Hur JK, Bento J, Urban AE, Song G, Cherry JM. CNN-Peaks: ChIP-Seq peak detection pipeline using convolutional neural networks that imitate human visual inspection. Scientific Reports. 10: 7933. PMID 32404971 DOI: 10.1038/S41598-020-64655-4 |
0.338 |
|
2019 |
Song G, Lee J, Kim J, Kang S, Lee H, Kwon D, Lee D, Lang GI, Cherry JM, Kim J. Integrative Meta-Assembly Pipeline (IMAP): Chromosome-level genome assembler combining multiple de novo assemblies. Plos One. 14: e0221858. PMID 31454399 DOI: 10.1371/Journal.Pone.0221858 |
0.396 |
|
2019 |
Zhou B, Ho SS, Greer SU, Spies N, Bell JM, Zhang X, Zhu X, Arthur JG, Byeon S, Pattni R, Saha I, Huang Y, Song G, Perrin D, Wong WH, et al. Haplotype-resolved and integrated genome analysis of the cancer cell line HepG2. Nucleic Acids Research. PMID 30864654 DOI: 10.1093/Nar/Gkz169 |
0.409 |
|
2019 |
Zhou B, Ho SS, Greer SU, Zhu X, Bell JM, Arthur JG, Spies N, Zhang X, Byeon S, Pattni R, Ben-Efraim N, Haney MS, Haraksingh RR, Song G, Ji HP, et al. Comprehensive, integrated, and phased whole-genome analysis of the primary ENCODE cell line K562. Genome Research. PMID 30737237 DOI: 10.1101/Gr.234948.118 |
0.391 |
|
2019 |
Bae T, Hwang WC, Lee D, Song G, Hur JW, Hur JK. Characterization of distinct mutation patterns by CRISPR-Cas9 and CRISPR-Cpf1 genome editing systems Molecular & Cellular Toxicology. 15: 383-389. DOI: 10.1007/S13273-019-0041-9 |
0.402 |
|
2018 |
Hwang D, Choi S, Shin J, Song G, Choi Y. Privacy-Preserving Compressed Reference-Oriented Alignment Map Using Decentralized Storage Ieee Access. 6: 45990-46001. DOI: 10.1109/Access.2018.2865994 |
0.38 |
|
2016 |
Song G, Balakrishnan R, Binkley G, Costanzo MC, Dalusag K, Demeter J, Engel S, Hellerstedt ST, Karra K, Hitz BC, Nash RS, Paskov K, Sheppard T, Skrzypek M, Weng S, et al. Integration of new alternative reference strain genome sequences into the Saccharomyces genome database. Database : the Journal of Biological Databases and Curation. 2016. PMID 27252399 DOI: 10.1093/Database/Baw074 |
0.395 |
|
2016 |
Engel SR, Weng S, Binkley G, Paskov K, Song G, Cherry JM. From one to many: expanding the Saccharomyces cerevisiae reference genome panel. Database : the Journal of Biological Databases and Curation. 2016. PMID 26989152 DOI: 10.1093/Database/Baw020 |
0.399 |
|
2015 |
Sheppard TK, Hitz BC, Engel SR, Song G, Balakrishnan R, Binkley G, Costanzo MC, Dalusag KS, Demeter J, Hellerstedt ST, Karra K, Nash RS, Paskov KM, Skrzypek MS, Weng S, et al. The Saccharomyces Genome Database Variant Viewer. Nucleic Acids Research. PMID 26578556 DOI: 10.1093/Nar/Gkv1250 |
0.397 |
|
2015 |
Song G, Dickins BJ, Demeter J, Engel S, Gallagher J, Choe K, Dunn B, Snyder M, Cherry JM. Correction: AGAPE (Automated Genome Analysis PipelinE) for Pan-Genome Analysis of Saccharomyces cerevisiae. Plos One. 10: e0129184. PMID 26017550 DOI: 10.1371/Journal.Pone.0129184 |
0.367 |
|
2015 |
Song G, Dickins BJ, Demeter J, Engel S, Dunn B, Cherry JM. AGAPE (Automated Genome Analysis PipelinE) for pan-genome analysis of Saccharomyces cerevisiae. Plos One. 10: e0120671. PMID 25781462 DOI: 10.1371/Journal.Pone.0120671 |
0.416 |
|
2015 |
Li C, Zhang C, Song G, Liu H, Sheng G, Ding Z, Wang Z, Sun Y, Xu Y, Chen J. Characterization of a protocatechuate catabolic gene cluster in Rhodococcus ruber OA1 involved in naphthalene degradation Annals of Microbiology. DOI: 10.1007/s13213-015-1132-z |
0.405 |
|
2012 |
Song G, Riemer C, Dickins B, Kim HL, Zhang L, Zhang Y, Hsu CH, Hardison RC, Nisc Comparative Sequencing Program, Green ED, Miller W. Revealing mammalian evolutionary relationships by comparative analysis of gene clusters. Genome Biology and Evolution. 4: 586-601. PMID 22454131 DOI: 10.1093/Gbe/Evs032 |
0.7 |
|
2011 |
Song G, Hsu CH, Riemer C, Zhang Y, Kim HL, Hoffmann F, Zhang L, Hardison RC, Green ED, Miller W. Conversion events in gene clusters. Bmc Evolutionary Biology. 11: 226. PMID 21798034 DOI: 10.1186/1471-2148-11-226 |
0.69 |
|
2011 |
Song G, Hsu CH, Riemer C, Miller W. Evaluation of methods for detecting conversion events in gene clusters. Bmc Bioinformatics. 12: S45. PMID 21342577 DOI: 10.1186/1471-2105-12-S1-S45 |
0.665 |
|
2010 |
Vinar T, Brejová B, Song G, Siepel A. Reconstructing histories of complex gene clusters on a phylogeny. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 17: 1267-79. PMID 20874408 DOI: 10.1089/Cmb.2010.0090 |
0.582 |
|
2010 |
Song G, Zhang L, Vinar T, Miller W. CAGE: Combinatorial Analysis of Gene-cluster Evolution. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 17: 1227-42. PMID 20874406 DOI: 10.1089/Cmb.2010.0094 |
0.667 |
|
2009 |
Zhang Y, Song G, Vinar T, Green ED, Siepel A, Miller W. Evolutionary history reconstruction for Mammalian complex gene clusters. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 16: 1051-70. PMID 19645598 DOI: 10.1089/Cmb.2009.0040 |
0.671 |
|
2009 |
Zhang Y, Song G, Hsu CH, Miller W. Simultaneous history reconstruction for complex gene clusters in multiple species. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 162-73. PMID 19209701 |
0.679 |
|
2009 |
Vinař T, Brejová B, Song G, Siepel A. Reconstructing Histories of Complex Gene Clusters on a Phylogeny Lecture Notes in Computer Science. 5817: 150. DOI: 10.1007/978-3-642-04744-2_13 |
0.496 |
|
2009 |
Song G, Zhang L, Vinař T, Miller W. Inferring the recent duplication history of a gene cluster Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5817: 111-125. DOI: 10.1007/978-3-642-04744-2_10 |
0.59 |
|
2008 |
Zhang Y, Song G, Vinař T, Green ED, Siepel A, Miller W. Reconstructing the evolutionary history of complex human gene clusters Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4955: 29-49. DOI: 10.1007/978-3-540-78839-3_4 |
0.573 |
|
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