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Yonghao Yu, Ph.D. - Publications

Affiliations: 
2006 University of California, Berkeley, Berkeley, CA, United States 
Area:
Bioorthogonal chemistry
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33 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Kim C, Wang XD, Yu Y. PARP1 inhibitors trigger innate immunity via PARP1 trapping-induced DNA damage response. Elife. 9. PMID 32844745 DOI: 10.7554/Elife.60637  0.303
2019 Zi Z, Zhang Y, Zhang P, Ding Q, Chu M, Chen Y, Minna JD, Yu Y. A Proteomic Connectivity Map for Characterizing the Tumor Adaptive Response to Small Molecule Chemical Perturbagens. Acs Chemical Biology. PMID 31846293 DOI: 10.1021/Acschembio.9B00694  0.313
2019 Li P, Zhen Y, Yu Y. Site-specific analysis of the Asp- and Glu-ADP-ribosylated proteome by quantitative mass spectrometry. Methods in Enzymology. 626: 301-321. PMID 31606080 DOI: 10.1016/Bs.Mie.2019.06.024  0.359
2019 Wang XD, Hu R, Ding Q, Savage TK, Huffman KE, Williams N, Cobb MH, Minna JD, Johnson JE, Yu Y. Subtype-specific secretomic characterization of pulmonary neuroendocrine tumor cells. Nature Communications. 10: 3201. PMID 31324758 DOI: 10.1038/S41467-019-11153-5  0.307
2018 He L, Gomes AP, Wang X, Yoon SO, Lee G, Nagiec MJ, Cho S, Chavez A, Islam T, Yu Y, Asara JM, Kim BY, Blenis J. mTORC1 Promotes Metabolic Reprogramming by the Suppression of GSK3-Dependent Foxk1 Phosphorylation. Molecular Cell. PMID 29861159 DOI: 10.1016/J.Molcel.2018.04.024  0.306
2018 Zhen Y, Yu Y. Proteomic analysis of the downstream signaling network of PARP1. Biochemistry. PMID 29327913 DOI: 10.1021/Acs.Biochem.7B01022  0.343
2017 Zhen Y, Zhang Y, Yu Y. A Cell-Line-Specific Atlas of PARP-Mediated Protein Asp/Glu-ADP-Ribosylation in Breast Cancer. Cell Reports. 21: 2326-2337. PMID 29166620 DOI: 10.1016/J.Celrep.2017.10.106  0.313
2017 Lee G, Zheng Y, Cho S, Jang C, England C, Dempsey JM, Yu Y, Liu X, He L, Cavaliere PM, Chavez A, Zhang E, Isik M, Couvillon A, Dephoure NE, et al. Post-transcriptional Regulation of De Novo Lipogenesis by mTORC1-S6K1-SRPK2 Signaling. Cell. PMID 29153836 DOI: 10.1016/J.Cell.2017.10.037  0.33
2017 Zhao X, Huffman KE, Fujimoto J, Canales JR, Girard L, Nie G, Heymach JV, Wistuba II, Minna JD, Yu Y. Quantitative Proteomic Analysis of Optimal Cutting Temperature (OCT) Embedded Core-Needle Biopsy of Lung Cancer. Journal of the American Society For Mass Spectrometry. PMID 28752479 DOI: 10.1007/S13361-017-1706-Z  0.316
2017 Luo X, Ryu KW, Kim DS, Nandu T, Medina CJ, Gupte R, Gibson BA, Soccio RE, Yu Y, Gupta RK, Kraus WL. PARP-1 Controls the Adipogenic Transcriptional Program by PARylating C/EBPβ and Modulating Its Transcriptional Activity. Molecular Cell. 65: 260-271. PMID 28107648 DOI: 10.1016/J.Molcel.2016.11.015  0.333
2017 Shi KY, Mori E, Nizami ZF, Lin Y, Kato M, Xiang S, Wu LC, Ding M, Yu Y, Gall JG, McKnight SL. Toxic PRn poly-dipeptides encoded by the C9orf72 repeat expansion block nuclear import and export. Proceedings of the National Academy of Sciences of the United States of America. PMID 28069952 DOI: 10.1073/Pnas.1620293114  0.301
2016 Gibson BA, Zhang Y, Jiang H, Hussey KM, Shrimp JH, Lin H, Schwede F, Yu Y, Kraus WL. Chemical genetic discovery of PARP targets reveals a role for PARP-1 in transcription elongation. Science (New York, N.Y.). PMID 27256882 DOI: 10.1126/Science.Aaf7865  0.33
2016 Ding M, Bruick RK, Yu Y. Secreted IGFBP5 mediates mTORC1-dependent feedback inhibition of IGF-1 signalling. Nature Cell Biology. PMID 26854565 DOI: 10.1038/Ncb3311  0.349
2016 Hu R, Huffman KE, Chu M, Zhang Y, Minna JD, Yu Y. Quantitative Secretomic Analysis Identifies Extracellular Protein Factors that Modulate the Metastatic Phenotype of Non-Small Cell Lung Cancer. Journal of Proteome Research. PMID 26736068 DOI: 10.1021/Acs.Jproteome.5B00819  0.3
2015 Li N, Zhang Y, Han X, Liang K, Wang J, Feng L, Wang W, Songyang Z, Lin C, Yang L, Yu Y, Chen J. Poly-ADP ribosylation of PTEN by tankyrases promotes PTEN degradation and tumor growth. Genes & Development. 29: 157-70. PMID 25547115 DOI: 10.1101/Gad.251785.114  0.306
2014 Shin S, Wolgamott L, Tcherkezian J, Vallabhapurapu S, Yu Y, Roux PP, Yoon SO. Glycogen synthase kinase-3β positively regulates protein synthesis and cell proliferation through the regulation of translation initiation factor 4E-binding protein 1. Oncogene. 33: 1690-9. PMID 23584478 DOI: 10.1038/Onc.2013.113  0.323
2013 Zhang Y, Wang J, Ding M, Yu Y. Site-specific characterization of the Asp- and Glu-ADP-ribosylated proteome. Nature Methods. 10: 981-4. PMID 23955771 DOI: 10.1038/Nmeth.2603  0.338
2011 Yu Y, Yoon SO, Poulogiannis G, Yang Q, Ma XM, Villén J, Kubica N, Hoffman GR, Cantley LC, Gygi SP, Blenis J. Phosphoproteomic analysis identifies Grb10 as an mTORC1 substrate that negatively regulates insulin signaling. Science (New York, N.Y.). 332: 1322-6. PMID 21659605 DOI: 10.1126/Science.1199484  0.301
2009 Kubota K, Anjum R, Yu Y, Kunz RC, Andersen JN, Kraus M, Keilhack H, Nagashima K, Krauss S, Paweletz C, Hendrickson RC, Feldman AS, Wu CL, Rush J, Villén J, et al. Sensitive multiplexed analysis of kinase activities and activity-based kinase identification. Nature Biotechnology. 27: 933-40. PMID 19801977 DOI: 10.1038/Nbt.1566  0.303
2009 Yu Y, Anjum R, Kubota K, Rush J, Villen J, Gygi SP. A site-specific, multiplexed kinase activity assay using stable-isotope dilution and high-resolution mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 106: 11606-11. PMID 19564600 DOI: 10.1073/Pnas.0905165106  0.316
2007 Schenauer MR, Yu Y, Sweeney MD, Leary JA. CCR2 chemokines bind selectively to acetylated heparan sulfate octasaccharides. The Journal of Biological Chemistry. 282: 25182-8. PMID 17597064 DOI: 10.1074/Jbc.M703387200  0.74
2007 Yu Y, Hoffhines AJ, Moore KL, Leary JA. Determination of the sites of tyrosine O-sulfation in peptides and proteins. Nature Methods. 4: 583-8. PMID 17558413 DOI: 10.1038/Nmeth1056  0.583
2007 Yu Y, Hoffhines AJ, Moore KL, Leary JA. A novel method for site-determination of tyrosine O-sulfation in peptides and proteins Nature Protocols. DOI: 10.1038/Nprot.2007.388  0.527
2006 Crown SE, Yu Y, Sweeney MD, Leary JA, Handel TM. Heterodimerization of CCR2 chemokines and regulation by glycosaminoglycan binding. The Journal of Biological Chemistry. 281: 25438-46. PMID 16803905 DOI: 10.1074/Jbc.M601518200  0.781
2006 Sweeney MD, Yu Y, Leary JA. Effects of sulfate position on heparin octasaccharide binding to CCL2 examined by tandem mass spectrometry. Journal of the American Society For Mass Spectrometry. 17: 1114-9. PMID 16735126 DOI: 10.1016/J.Jasms.2006.04.025  0.777
2006 Yu Y, Sweeney MD, Saad OM, Leary JA. Potential inhibitors of chemokine function: analysis of noncovalent complexes of CC chemokine and small polyanionic molecules by ESI FT-ICR mass spectrometry. Journal of the American Society For Mass Spectrometry. 17: 524-35. PMID 16503157 DOI: 10.1016/J.Jasms.2005.12.008  0.779
2006 Yu Y, Sweeney MD, Saad OM, Crown SE, Handel TM, Leary JA. Potential Inhibitors of Chemokine Function: Analysis of Noncovalent Complexes of CC Chemokine and Small Polyanionic Molecules by ESI FT-ICR Mass Spectrometry (DOI:10.1016/j.jasms.2005.12.008) Journal of the American Society For Mass Spectrometry. 17: 1040. DOI: 10.1016/J.Jasms.2006.04.027  0.746
2005 Gao H, Yu Y, Leary JA. Mechanism and kinetics of metalloenzyme phosphomannose isomerase: measurement of dissociation constants and effect of zinc binding using ESI-FTICR mass spectrometry. Analytical Chemistry. 77: 5596-603. PMID 16131071 DOI: 10.1021/Ac050549M  0.683
2005 Yu Y, Sweeney MD, Saad OM, Crown SE, Hsu AR, Handel TM, Leary JA. Chemokine-glycosaminoglycan binding: specificity for CCR2 ligand binding to highly sulfated oligosaccharides using FTICR mass spectrometry. The Journal of Biological Chemistry. 280: 32200-8. PMID 16033763 DOI: 10.1074/Jbc.M505738200  0.777
2005 Yu Y, Ji H, Doudna JA, Leary JA. Mass spectrometric analysis of the human 40S ribosomal subunit: native and HCV IRES-bound complexes. Protein Science : a Publication of the Protein Society. 14: 1438-46. PMID 15883184 DOI: 10.1110/Ps.041293005  0.588
2004 Ji H, Fraser CS, Yu Y, Leary J, Doudna JA. Coordinated assembly of human translation initiation complexes by the hepatitis C virus internal ribosome entry site RNA. Proceedings of the National Academy of Sciences of the United States of America. 101: 16990-5. PMID 15563596 DOI: 10.1073/Pnas.0407402101  0.549
2004 Yu Y, Kirkup CE, Pi N, Leary JA. Characterization of noncovalent protein-ligand complexes and associated enzyme intermediates of GlcNAc-6-O-sulfotransferase by electrospray ionization FT-ICR mass spectrometry. Journal of the American Society For Mass Spectrometry. 15: 1400-7. PMID 15465352 DOI: 10.1016/J.Jasms.2004.06.002  0.642
2004 Pi N, Yu Y, Mougous JD, Leary JA. Observation of a hybrid random ping-pong mechanism of catalysis for NodST: a mass spectrometry approach. Protein Science : a Publication of the Protein Society. 13: 903-12. PMID 15044725 DOI: 10.1110/Ps.03581904  0.714
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